Carg11464 (gene) Silver-seed gourd

Overview
NameCarg11464
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmembrane protein of ER body 2-like
LocationCucurbita_argyrosperma_scaffold_083 : 59473 .. 62127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGTAATCACAGCAGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGTAATTTCCTTTTTTCGAACAGGAACTGCAATCAGCTTTGGCGATTCGTATATTTCAGGAGTAGGAATTCCTTGTGCATGATTCACATGTAGGTTTGTTATCGGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTTTTTGAGACTATATTTGATGGTGAAGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGATGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCGCAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTTGGAGATGTGGCTAGTTTCATAGGATCACATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACACCGTCAGTCGACAACTTTATAAGGTTATCAGTAGCTATAACCACCTTGCCCTCGCTAATGATTAACTCGTCTTTCTCGGAATATCCCAGGAGATAAACGGAGTTGCCGAGATCAAGATTTGGTTTAGAACATATCTTCAAATGTTGAAGCTGCTGAGAGTTGGAGTCTCCATCCACTGCATCTAATCCCACTATTGTAAGATCCAAAACAGAACTTGTAATGAAAAACCTGCAACCAAAGTAAACTTCAAAAATTAGCTGAAGACTTCCATGCAAATGATGCACATCAAATGATTCACATGGTATGTAAAGTTGATAAAAGTAAAAGGCCAATGGTTTCAGAAGAATACAGAGTTCCGAAGTGTTTTAAGTTATTAAATTTTGCTACAACCGAAGACCACCGCTAGCAGATATTGTCTTCTTTGGGCTTTCCTTTTGGGGCTTCCCCTCAAGGTTTTTAAAACGCATTTGTTAGGGAGAGCTTTCCACATCCTTATAAAGAATGCTTTGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTTTGGAGCTTAGCATCCTCGCTGGCACTCGTTCCCTTCTCCAATCAATGTGGGACCCTCCAATTCACCCCCCTTCGAGGCCCAGCGTCCTTGCTGGCACATCGCCCGATATCTGGCTCTGATACCATTTGTAACAGCCCACTCCTAGCAAATATTTTTCTCTTTGGACTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACATTCTTATAAAGAATGCTTCGTTCTTCTCCCCTACCGATGTGGGATCTCACACAATACTACCTTTTTTGTAGCATGGCCAGTAATTAAAGAAGAATGTTCCTCTCTTCAGATTACCAGGTATTGAATCATGATACAGCAAAAACTCATAGAATGAATGCTAGCTTCCCTGTTCTTGACGATAGAGAAGTATGGCTTGAAAGAGGTATGCACACCTCTTCATAGTTATTAGCAAAAGATAATGTTTACCCCTATACTTAGCCTAGCAAGTCAACTTTAACCTTAAATTTTTCAAGTTCACTAGATTACATTGCATCCCAGATTTGAATATTCTCCAAATCAAGCAAGAAATCGAGAAAAAATCGACCAACAAAACACTTAAACTCGAACTACAGAAATGTTCAAGCTCAACCATGAAAATACTCAAACCCAGCACACAAAAAAGAAAATTTCAACAACAAAATACTTGAACCATGCTTAAAAAGCATATAGAATTGCAAGAAGTATCAATACCCACAACAACAGTCTCATATAGCTCTAAAACTGCTCAAATATATCTATAAGTTTTCACAATTGACTTACTGTGCTAAGCATAAGGGATTGAATGGTTAATTTTTGGTATGACTTTTGGCAAGTATCTTACAAAGCTACCTAGTTGATGCATGTTTCTTAGGCATAATACATCATTGAGACAAACAATCAGTACCCCACAAGCTACAAGTGATATTAAACCTCCCCCAAGTAGAGAAAAACAAGATCCAATGATGAACTGGGTAAGGTAGATGAAGTTGTACCAAGTGAATTAAGAGGTATAACCCAAATGTCTATGAGAGAGATGAACAAGAATTGCAGATTTTCTAACTCTGTCTCAGATTTTGACCATCCAACATAAATGCAATGTAGACATTTGATCCAAACCCCTTCAAATCACCACATTTTAAGAGGGTAATCAATGAATCAAAGGAAAAGAAACGAACAAAATAGAATTTGAATCTGTAATCATATTCAAAAAGTAAAGGAGCTATTGAACTTGCACACAGTCACTTCAGCCATCAATTTCCAGCAAATAAAAACAAAAAGCAAGAACAGCAACCAGATACTCCAAAAGAAATCCCAAAACGAAGCATTAACTCAGCCTAATCCTAATCTTCTACATTTCTTCCATCATTCCTACAATACCCAGAACAGAACAAAGCAAAACAAATCACCTATGAGGAACAAGGCTGGCAGCGACACCGTTTTGGAGGCGGATCTCGCAAGCCTCAGCAGCAGAAACTGA

mRNA sequence

ATGTGGAGTAATCACAGCAGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGAACTGCAATCAGCTTTGGCGATTCGTATATTTCAGGAGTTTGTTATCGGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGATGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCGCAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTTGGAGATGTGGCTAGTTTCATAGGATCACATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACACCGTCAGTCGACAACTTTATAAGCGACACCGTTTTGGAGGCGGATCTCGCAAGCCTCAGCAGCAGAAACTGA

Coding sequence (CDS)

ATGTGGAGTAATCACAGCAGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGAACTGCAATCAGCTTTGGCGATTCGTATATTTCAGGAGTTTGTTATCGGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGATGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCGCAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTTGGAGATGTGGCTAGTTTCATAGGATCACATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACACCGTCAGTCGACAACTTTATAAGCGACACCGTTTTGGAGGCGGATCTCGCAAGCCTCAGCAGCAGAAACTGA

Protein sequence

MWSNHSSGNSWRKVDIQKLCWRTAISFGDSYISGVCYRSLFLDGVRRSGIARSSHVPGVSSSFTSIGLKTCLNEKDEECSLFCPEDINLMSCGFGLLSSSRLPSQCWFNQSQTIGRGIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVDNFISDTVLEADLASLSSRN
Homology
[Close]
BLAST of Carg11464 vs. NCBI nr
Match: XP_018851592.1 (PREDICTED: membrane protein of ER body 2-like [Juglans regia])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 117 GIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVD 176
           G+PNCIGRSFFQDD  D+EV++DL FGDVASFIGS  +NARLPC SNPA+PGLH+TPSVD
Sbjct: 529 GMPNCIGRSFFQDDVDDDEVEEDLAFGDVASFIGSQIMNARLPCTSNPADPGLHITPSVD 588

Query: 177 NFI 180
           +F+
Sbjct: 589 SFM 591

[Close]
BLAST of Carg11464 vs. TrEMBL
Match: tr|A0A2I4H624|A0A2I4H624_9ROSI (membrane protein of ER body 2-like OS=Juglans regia OX=51240 GN=LOC109013833 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.1e-21
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 117 GIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVD 176
           G+PNCIGRSFFQDD  D+EV++DL FGDVASFIGS  +NARLPC SNPA+PGLH+TPSVD
Sbjct: 529 GMPNCIGRSFFQDDVDDDEVEEDLAFGDVASFIGSQIMNARLPCTSNPADPGLHITPSVD 588

Query: 177 NFI 180
           +F+
Sbjct: 589 SFM 591

[Close]
BLAST of Carg11464 vs. TrEMBL
Match: tr|A0A2P2QKU1|A0A2P2QKU1_RHIMU (Uncharacterized protein LOC105119531 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 117 GIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVD 176
           GIPNC+G SFF D   D+EV++DLV+GDVASFIGS  +NAR PCASNPA+P LH   SV+
Sbjct: 2   GIPNCMGESFFHDVVDDDEVEEDLVYGDVASFIGSQIMNARFPCASNPADPALHSISSVE 61

Query: 177 NFI 180
           +F+
Sbjct: 62  SFM 64

[Close]
BLAST of Carg11464 vs. TrEMBL
Match: tr|A0A0E0CC54|A0A0E0CC54_9ORYZ (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 131 EVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVDNF 179
           E DE+V+DDLV G+ A+F+GS  + A+ P AS PAEPG HVTPSV++F
Sbjct: 5   EGDEDVEDDLVVGEEANFMGSQIMKAKFPWASKPAEPGHHVTPSVESF 52

The following BLAST results are available for this feature:
BLAST of Carg11464 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_018851592.11.1e-2076.19PREDICTED: membrane protein of ER body 2-like [Juglans regia][more]
BLAST of Carg11464 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg11464 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg11464 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I4H624|A0A2I4H624_9ROSI7.1e-2176.19membrane protein of ER body 2-like OS=Juglans regia OX=51240 GN=LOC109013833 PE=... [more]
tr|A0A2P2QKU1|A0A2P2QKU1_RHIMU2.0e-1565.08Uncharacterized protein LOC105119531 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A0E0CC54|A0A0E0CC54_9ORYZ4.5e-0760.42Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11464-RACarg11464-RAmRNA