CmaCh17G012860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 8677259 .. 8678543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATTCTATCAGAACATCCATCTCGGGGACGAGTGACCAGCAGCAGAGCTTTGCCTTGGTCTGTTAACTTGTTCCGAGCTGTTTCGCTTCTTCATGATCGAGGAGACTGTCGGGCCGTAGTAGTCATTGCTCCGGTAAGATCCAGCCCCTTGAGAATGCATATTCCTTCCACTTTTATAACTTTTTTGATTCTCTAGCATTGTCTGGCGAGCCATTGGATTTCTTTGGACTGATCCCCATCTATTGTAGTTTACACAACTCTGACTCCTTCCAACCTGTTGAAACTTCCCTTCTCTAGGACTTGTATAGTTTCGGCTCTCTGCAGTTTCTGCAGAGTACATTGTCGTCTCTCCCTCGCTGCTATACTCGTCCTGCACCTCTGAAGCTTCCATGGGAGATGAACAAGACTGAACTTCACTTAACGCCCCATTTACAGAATTTGTTGAGGCAACCTCTTCTCTATCTTCTCCGTTTTCGACAGGATTGACAAGTTTTCTGTTCATGGTTTTGTCTTGTCTCAATTGGTTCTGTTGAGAAACATCCTTTGTCGAATTTTCATCAGAGCTGAGTCGGGTTGGTCTGGTAGGATGCGGAGTAATCACAGCTGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGTAATTTCCTTTTTTCGAACAGGAACTGCAATCAGCTTTGGCGATTCGTATATTTCGGGAGTAGGAATTCCTTGCGCATGATTCACATGTAGGTTAGTTATCAGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTTTTTGAGACTATATTTGATGGTGAAGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGAAGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCACAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTCGGAGATGTGGCTAGTTTCATAGGATCGCATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACCCCGTCAGTCGACAACTTTATAAGGTTATCAGTGGCTATAACCACCTTGCCCTCACTAATGATTAACTCGTCTTTCTCGGAATATCCCAGGAGATAA

mRNA sequence

ATGATAATTCTATCAGAACATCCATCTCGGGGACGAGTGACCAGCAGCAGAGCTTTGCCTTGGTCTGTTAACTTGTTCCGAGCTGTTTCGCTTCTTCATGATCGAGGAGACTGTCGGGCCGTAGTAGTCATTGCTCCGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGAAGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCACAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTCGGAGATGTGGCTAGTTTCATAGGATCGCATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACCCCGTCAGTCGACAACTTTATAAGGTTATCAGTGGCTATAACCACCTTGCCCTCACTAATGATTAACTCGTCTTTCTCGGAATATCCCAGGAGATAA

Coding sequence (CDS)

ATGATAATTCTATCAGAACATCCATCTCGGGGACGAGTGACCAGCAGCAGAGCTTTGCCTTGGTCTGTTAACTTGTTCCGAGCTGTTTCGCTTCTTCATGATCGAGGAGACTGTCGGGCCGTAGTAGTCATTGCTCCGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGAAGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCACAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTCGGAGATGTGGCTAGTTTCATAGGATCGCATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACCCCGTCAGTCGACAACTTTATAAGGTTATCAGTGGCTATAACCACCTTGCCCTCACTAATGATTAACTCGTCTTTCTCGGAATATCCCAGGAGATAA

Protein sequence

MIILSEHPSRGRVTSSRALPWSVNLFRAVSLLHDRGDCRAVVVIAPSLFLDGVRRSGIARSSHVPGVSSSFTSIGLKTCLNEKEEECSLFCPEDINLMSCGFGLLSSSRLPSQCWFNQSQTIGRGIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVDNFIRLSVAITTLPSLMINSSFSEYPRR

Homology

[Close]

BLAST of CmaCh17G012860 vs. TrEMBL
Match: A0A0E0CC54_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.1e-08
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 139 EVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVDNFIRL 190
           E DE+V+DDLV G+ A+F+GS  + A+ P AS PAEPG HVTPSV++F R+
Sbjct: 5   EGDEDVEDDLVVGEEANFMGSQIMKAKFPWASKPAEPGHHVTPSVESFKRI 55

The following BLAST results are available for this feature:

BLAST of CmaCh17G012860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0CC54_9ORYZ	9.1e-08	58.82	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]

BLAST of CmaCh17G012860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012860 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012860.1	CmaCh17G012860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G012860	Carg11464	Silver-seed gourd	carcmaB0020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G012860	Cucurbita maxima (Rimu)	cmacmaB374
CmaCh17G012860	Cucumber (Gy14) v1	cgycmaB0137
CmaCh17G012860	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G012860	Cucurbita moschata (Rifu)	cmacmoB366
CmaCh17G012860	Wild cucumber (PI 183967)	cmacpiB388
CmaCh17G012860	Cucumber (Chinese Long) v2	cmacuB384
CmaCh17G012860	Melon (DHL92) v3.5.1	cmameB321
CmaCh17G012860	Watermelon (Charleston Gray)	cmawcgB309
CmaCh17G012860	Watermelon (97103) v1	cmawmB331
CmaCh17G012860	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G012860	Cucurbita pepo (Zucchini)	cmacpeB379
CmaCh17G012860	Bottle gourd (USVL1VR-Ls)	cmalsiB346
CmaCh17G012860	Cucumber (Gy14) v2	cgybcmaB920
CmaCh17G012860	Melon (DHL92) v3.6.1	cmamedB374
CmaCh17G012860	Silver-seed gourd	carcmaB0104
CmaCh17G012860	Cucumber (Chinese Long) v3	cmacucB0457
CmaCh17G012860	Watermelon (97103) v2	cmawmbB390
CmaCh17G012860	Wax gourd	cmawgoB0493