Carg11464-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11464-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	membrane protein of ER body 2-like
Location	Cucurbita_argyrosperma_scaffold_083 : 59473 .. 62127 (-)
Sequence length	588

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGTAATCACAGCAGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGTAATTTCCTTTTTTCGAACAGGAACTGCAATCAGCTTTGGCGATTCGTATATTTCAGGAGTAGGAATTCCTTGTGCATGATTCACATGTAGGTTTGTTATCGGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTTTTTGAGACTATATTTGATGGTGAAGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGATGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCGCAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTTGGAGATGTGGCTAGTTTCATAGGATCACATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACACCGTCAGTCGACAACTTTATAAGGTTATCAGTAGCTATAACCACCTTGCCCTCGCTAATGATTAACTCGTCTTTCTCGGAATATCCCAGGAGATAAACGGAGTTGCCGAGATCAAGATTTGGTTTAGAACATATCTTCAAATGTTGAAGCTGCTGAGAGTTGGAGTCTCCATCCACTGCATCTAATCCCACTATTGTAAGATCCAAAACAGAACTTGTAATGAAAAACCTGCAACCAAAGTAAACTTCAAAAATTAGCTGAAGACTTCCATGCAAATGATGCACATCAAATGATTCACATGGTATGTAAAGTTGATAAAAGTAAAAGGCCAATGGTTTCAGAAGAATACAGAGTTCCGAAGTGTTTTAAGTTATTAAATTTTGCTACAACCGAAGACCACCGCTAGCAGATATTGTCTTCTTTGGGCTTTCCTTTTGGGGCTTCCCCTCAAGGTTTTTAAAACGCATTTGTTAGGGAGAGCTTTCCACATCCTTATAAAGAATGCTTTGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTTTGGAGCTTAGCATCCTCGCTGGCACTCGTTCCCTTCTCCAATCAATGTGGGACCCTCCAATTCACCCCCCTTCGAGGCCCAGCGTCCTTGCTGGCACATCGCCCGATATCTGGCTCTGATACCATTTGTAACAGCCCACTCCTAGCAAATATTTTTCTCTTTGGACTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACATTCTTATAAAGAATGCTTCGTTCTTCTCCCCTACCGATGTGGGATCTCACACAATACTACCTTTTTTGTAGCATGGCCAGTAATTAAAGAAGAATGTTCCTCTCTTCAGATTACCAGGTATTGAATCATGATACAGCAAAAACTCATAGAATGAATGCTAGCTTCCCTGTTCTTGACGATAGAGAAGTATGGCTTGAAAGAGGTATGCACACCTCTTCATAGTTATTAGCAAAAGATAATGTTTACCCCTATACTTAGCCTAGCAAGTCAACTTTAACCTTAAATTTTTCAAGTTCACTAGATTACATTGCATCCCAGATTTGAATATTCTCCAAATCAAGCAAGAAATCGAGAAAAAATCGACCAACAAAACACTTAAACTCGAACTACAGAAATGTTCAAGCTCAACCATGAAAATACTCAAACCCAGCACACAAAAAAGAAAATTTCAACAACAAAATACTTGAACCATGCTTAAAAAGCATATAGAATTGCAAGAAGTATCAATACCCACAACAACAGTCTCATATAGCTCTAAAACTGCTCAAATATATCTATAAGTTTTCACAATTGACTTACTGTGCTAAGCATAAGGGATTGAATGGTTAATTTTTGGTATGACTTTTGGCAAGTATCTTACAAAGCTACCTAGTTGATGCATGTTTCTTAGGCATAATACATCATTGAGACAAACAATCAGTACCCCACAAGCTACAAGTGATATTAAACCTCCCCCAAGTAGAGAAAAACAAGATCCAATGATGAACTGGGTAAGGTAGATGAAGTTGTACCAAGTGAATTAAGAGGTATAACCCAAATGTCTATGAGAGAGATGAACAAGAATTGCAGATTTTCTAACTCTGTCTCAGATTTTGACCATCCAACATAAATGCAATGTAGACATTTGATCCAAACCCCTTCAAATCACCACATTTTAAGAGGGTAATCAATGAATCAAAGGAAAAGAAACGAACAAAATAGAATTTGAATCTGTAATCATATTCAAAAAGTAAAGGAGCTATTGAACTTGCACACAGTCACTTCAGCCATCAATTTCCAGCAAATAAAAACAAAAAGCAAGAACAGCAACCAGATACTCCAAAAGAAATCCCAAAACGAAGCATTAACTCAGCCTAATCCTAATCTTCTACATTTCTTCCATCATTCCTACAATACCCAGAACAGAACAAAGCAAAACAAATCACCTATGAGGAACAAGGCTGGCAGCGACACCGTTTTGGAGGCGGATCTCGCAAGCCTCAGCAGCAGAAACTGA

mRNA sequence

ATGTGGAGTAATCACAGCAGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGAACTGCAATCAGCTTTGGCGATTCGTATATTTCAGGAGTTTGTTATCGGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGATGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCGCAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTTGGAGATGTGGCTAGTTTCATAGGATCACATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACACCGTCAGTCGACAACTTTATAAGCGACACCGTTTTGGAGGCGGATCTCGCAAGCCTCAGCAGCAGAAACTGA

Coding sequence (CDS)

ATGTGGAGTAATCACAGCAGTGGAAACTCTTGGAGGAAAGTTGATATCCAGAAGCTGTGTTGGCGAACTGCAATCAGCTTTGGCGATTCGTATATTTCAGGAGTTTGTTATCGGAGCCTCTTCCTTGATGGTGTTCGACGTAGCGGAATAGCTCGGTCCAGCCACGTCCCTGGTGTTTCCTCATCATTCACCTCCATTGGCTTAAAAACTTGCCTCAATGAGAAGGATGAAGAATGCTCACTCTTTTGTCCTGAAGACATCAATCTTATGAGTTGTGGCTTTGGTTTGTTAAGTTCATCAAGACTACCTTCCCAATGTTGGTTTAACCAATCGCAAACGATTGGCAGAGGAATCCCGAATTGCATAGGAAGATCCTTCTTCCAAGACGATGAAGTCGACGAAGAAGTCGACGATGATTTGGTATTTGGAGATGTGGCTAGTTTCATAGGATCACATACCATAAATGCAAGGTTACCTTGTGCATCAAATCCAGCAGAACCAGGACTCCATGTTACACCGTCAGTCGACAACTTTATAAGCGACACCGTTTTGGAGGCGGATCTCGCAAGCCTCAGCAGCAGAAACTGA

Protein sequence

MWSNHSSGNSWRKVDIQKLCWRTAISFGDSYISGVCYRSLFLDGVRRSGIARSSHVPGVSSSFTSIGLKTCLNEKDEECSLFCPEDINLMSCGFGLLSSSRLPSQCWFNQSQTIGRGIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVDNFISDTVLEADLASLSSRN

Homology

[Close]

BLAST of Carg11464-RA vs. NCBI nr
Match: XP_018851592.1 (PREDICTED: membrane protein of ER body 2-like [Juglans regia])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 117 GIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVD 176
           G+PNCIGRSFFQDD  D+EV++DL FGDVASFIGS  +NARLPC SNPA+PGLH+TPSVD
Sbjct: 529 GMPNCIGRSFFQDDVDDDEVEEDLAFGDVASFIGSQIMNARLPCTSNPADPGLHITPSVD 588

Query: 177 NFI 180
           +F+
Sbjct: 589 SFM 591

[Close]

BLAST of Carg11464-RA vs. TrEMBL
Match: tr|A0A2I4H624|A0A2I4H624_9ROSI (membrane protein of ER body 2-like OS=Juglans regia OX=51240 GN=LOC109013833 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.1e-21
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 117 GIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVD 176
           G+PNCIGRSFFQDD  D+EV++DL FGDVASFIGS  +NARLPC SNPA+PGLH+TPSVD
Sbjct: 529 GMPNCIGRSFFQDDVDDDEVEEDLAFGDVASFIGSQIMNARLPCTSNPADPGLHITPSVD 588

Query: 177 NFI 180
           +F+
Sbjct: 589 SFM 591

[Close]

BLAST of Carg11464-RA vs. TrEMBL
Match: tr|A0A2P2QKU1|A0A2P2QKU1_RHIMU (Uncharacterized protein LOC105119531 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 GIPNCIGRSFFQDDEVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVD 176
           GIPNC+G SFF D   D+EV++DLV+GDVASFIGS  +NAR PCASNPA+P LH   SV+
Sbjct: 2   GIPNCMGESFFHDVVDDDEVEEDLVYGDVASFIGSQIMNARFPCASNPADPALHSISSVE 61

Query: 177 NFI 180
           +F+
Sbjct: 62  SFM 64

[Close]

BLAST of Carg11464-RA vs. TrEMBL
Match: tr|A0A0E0CC54|A0A0E0CC54_9ORYZ (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 131 EVDEEVDDDLVFGDVASFIGSHTINARLPCASNPAEPGLHVTPSVDNF 179
           E DE+V+DDLV G+ A+F+GS  + A+ P AS PAEPG HVTPSV++F
Sbjct: 5   EGDEDVEDDLVVGEEANFMGSQIMKAKFPWASKPAEPGHHVTPSVESF 52

The following BLAST results are available for this feature:

BLAST of Carg11464-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018851592.1	1.1e-20	76.19	PREDICTED: membrane protein of ER body 2-like [Juglans regia]	[more]

BLAST of Carg11464-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11464-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11464-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4H624\|A0A2I4H624_9ROSI	7.1e-21	76.19	membrane protein of ER body 2-like OS=Juglans regia OX=51240 GN=LOC109013833 PE=...	[more]
tr\|A0A2P2QKU1\|A0A2P2QKU1_RHIMU	2.0e-15	65.08	Uncharacterized protein LOC105119531 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A0E0CC54\|A0A0E0CC54_9ORYZ	4.5e-07	60.42	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11464	Carg11464	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11464-RA	Carg11464-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11464-RA.CDS.5	Carg11464-RA.CDS.5	CDS
Carg11464-RA.CDS.4	Carg11464-RA.CDS.4	CDS
Carg11464-RA.CDS.3	Carg11464-RA.CDS.3	CDS
Carg11464-RA.CDS.2	Carg11464-RA.CDS.2	CDS
Carg11464-RA.CDS.1	Carg11464-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11464-RA.exon.5	Carg11464-RA.exon.5	exon
Carg11464-RA.exon.4	Carg11464-RA.exon.4	exon
Carg11464-RA.exon.3	Carg11464-RA.exon.3	exon
Carg11464-RA.exon.2	Carg11464-RA.exon.2	exon
Carg11464-RA.exon.1	Carg11464-RA.exon.1	exon