Carg11257 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11257
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ubiquitin receptor RAD23b-like
Location	Cucurbita_argyrosperma_scaffold_013 : 950996 .. 953632 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTTTGTTCTTGTTTTGCAGTGCCCCCAAGAACACTACGTCTACTTCAGACAGGGTGACAGATAGGTATGGCTTCTATTTCGTATTCATATTTTTTAACTTCAAGAGGCATGAAATTGGTTAGCAAGTCACCTTCTATTTCCTAGTATTAAATCTATGCTGCAATATAACACATATCAAATCTGATAAAAGCTACAGACTGAATTACTTTTATAGGAGTTCTTGATTATTAAGTATTGAGTAATATGTTTTCTCCTCTTTTGCTTTATTTATAAATGAAGCATTTTTCCTACTGGTGGGAAAGTTTCTCATTCTTTTTTCGGGGGGATCATTTGCAGTATGCAAACAGATACATATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAATCTGGAACAGACCATTCAACAATTAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCACTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGTATGTTTAAGTTGTATTCTATGCATTCTCTTGAAACCTGGTCATAATATTTTGTCACTAATTGTGTTTTTTTGTGTTCAGGGTATTCCGGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCCAGCCACTGAAACTGAGGCATCCCTTCCTGCACCTGCTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGTAAGTTGATGCATGAAAAACGCTTTTGTTGGATGCATGAAAAACGCTTTTGTTGGTTTGCTCACGTTCACTTATTTTTTATTGGGTTGCAATCATGCAGGAGGCACTTTCTGCTGGCGGTGGTGGCCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGGTACATAGTGCAACATCATTTATTGGGTTTTCCTTATTGATAAGCTCATTTGCTTTCTTTACTAGGTATCTTAGTGCATGGAGTGTCAAATCCGTTGTTTGGTCTAAGTCCCATTTTCACCTAATAGTTGTGTTAGTTTGCAACTTTTGACACGTTGGTTCATGTTAAATGTATAAACTAAAAAGTTACAAATATTTGATCTGAAGTATGCGTGTTGATTATATTTGTTCAGTCATATCATCCCATTATTTGTATATCACTTGTACACAGGCCCAAAATCTTGATTTATTTCTTATGGACTATGGATTTGAATAGAACTAAATGCGAAGTAGTTACTGAATGAGGTTTCTCATCATTATTCATATTATAGTTTCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGGTTTACACATTCTTCTGCTTTGAAATTTGCTTAGTGGTTATAATCAATTGGTTTTCCTAGAGTTAAATCTTTTGCTTCTGGTGGCAGCCCATGCTTCAAGAACTTGGAAAACAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGTTAATTAATGAACCTGTTGACAATTTTGAGGGGTCGGTCTTAAACTACTATGATCTGATTGATTTTAAATCTAGTTAATTTTGCAGTTCTTTAGTTGTGATCAATCTCGTGCATATAAGATGATAGTTGCATAGATAACCCGTCTTATTTTTTCTCCCATCACCAAATTCGCAGCACTTCTGCTGTAGGTTCCTGCGTGGGACAATAATACATAATCAGGTCAGGTGTATCTATCTTTAGAACAAGCCATAGGTAAATTGGTTAAGCCATAGATTGAGATCAGAGGTTCAAATCCCTCCGTTTGAACTACAAAAACATAGTCATCGGTAGATTAAGAACTGTTTCTGGGACTGGTTTACACGAGATTTTGTTCACTCGATTGATTATTATTTCATTGGTTGAACCTCTTTTGATGTGACATCGCTTGCATCCATCTGTAGAACTATAAACTATGTTCTTTCTTTCAGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTTACTCCAGACGAACAGGCAGCCATTGAACGAGTACGAACTCCTTTATATTCCCTGAGACGTCTGTTTGTTTTCCCTCTTCAAACTAAATCTTTGTGCTCATCATTTTGCTGCTTGCTCCCCTGTATGTAGCTCGAGGCAATGGGATTCGATCGAGCCTTGGTGATCGAGGCATTTTTGGCATGCGATCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGACGATTAACAAAAGAAGAATTAATTAATGTTAACCGCTGTGGATTCATTATTTTTGGTGCTGAGGTGAATTGTTTCCCTTTTCAGCATTATTCCGAGTCTGTTCTTGCATTGCATTTTACATACTCCACTAATAAATAGGAAAATTAATTGTTCAAGTGTATGGTGTTTCCGATTTAGAGAATTGGAATCTTTATGTTTTATTTAAAAGCTCATTTGTTGGTAGCTAGTTCGTTACAACATTATTGCAGATAGATCATGAGATTTTATATACTTTTCTGATTATCGTGTAAATATAATTGTTGAAAAATATCAACAGATTTTGACATGACATTTTGTTTCTTGTGATATGTTTATGCTATTAACATAAATATATATATATATATATATATATATATATAT

mRNA sequence

ATGCATTTTTTGTTCTTGTTTTGCAGTGCCCCCAAGAACACTACGTCTACTTCAGACAGGGTGACAGATAGTATGCAAACAGATACATATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAATCTGGAACAGACCATTCAACAATTAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCACTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCGGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCCAGCCACTGAAACTGAGGCATCCCTTCCTGCACCTGCTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCGGTGGTGGCCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGTTTCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGCCCATGCTTCAAGAACTTGGAAAACAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGTTAATTAATGAACCTGTTGACAATTTTGAGGGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTTACTCCAGACGAACAGGCAGCCATTGAACGACTCGAGGCAATGGGATTCGATCGAGCCTTGGTGATCGAGGCATTTTTGGCATGCGATCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGACGATTAACAAAAGAAGAATTAATTAATGTTAACCGCTGTGGATTCATTATTTTTGGTGCTGAGGTGAATTGTTTCCCTTTTCAGCATTATTCCGAGTCTGTTCTTGCATTGCATTTTACATACTCCACTAATAAATAGGAAAATTAATTGTTCAAGTGTATGGTGTTTCCGATTTAGAGAATTGGAATCTTTATGTTTTATTTAAAAGCTCATTTGTTGGTAGCTAGTTCGTTACAACATTATTGCAGATAGATCATGAGATTTTATATACTTTTCTGATTATCGTGTAAATATAATTGTTGAAAAATATCAACAGATTTTGACATGACATTTTGTTTCTTGTGATATGTTTATGCTATTAACATAAATATATATATATATATATATATATATATATAT

Coding sequence (CDS)

ATGCATTTTTTGTTCTTGTTTTGCAGTGCCCCCAAGAACACTACGTCTACTTCAGACAGGGTGACAGATAGTATGCAAACAGATACATATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAATCTGGAACAGACCATTCAACAATTAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCACTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCGGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCCAGCCACTGAAACTGAGGCATCCCTTCCTGCACCTGCTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCGGTGGTGGCCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGTTTCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGCCCATGCTTCAAGAACTTGGAAAACAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGTTAATTAATGAACCTGTTGACAATTTTGAGGGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTTACTCCAGACGAACAGGCAGCCATTGAACGACTCGAGGCAATGGGATTCGATCGAGCCTTGGTGATCGAGGCATTTTTGGCATGCGATCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGACGATTAA

Protein sequence

MHFLFLFCSAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD

Homology

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BLAST of Carg11257 vs. NCBI nr
Match: XP_022983432.1 (ubiquitin receptor RAD23b-like [Cucurbita maxima])

HSP 1 Score: 507.7 bits (1306), Expect = 2.4e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 9   SAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALR 68
           SAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALR
Sbjct: 126 SAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALR 185

Query: 69  AAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQ 128
           AAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQ
Sbjct: 186 AAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQ 245

Query: 129 EALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAE 188
           EALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAE
Sbjct: 246 EALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAE 305

Query: 189 FLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDR 248
           FLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDR
Sbjct: 306 FLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDR 365

Query: 249 NEELAANYLLENSGDFDD 267
           NEELAANYLLENSGDFDD
Sbjct: 366 NEELAANYLLENSGDFDD 383

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BLAST of Carg11257 vs. NCBI nr
Match: XP_023528872.1 (ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500.0 bits (1286), Expect = 5.1e-138
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 13  NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN 72
           NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN
Sbjct: 130 NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN 189

Query: 73  NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS 132
           NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS
Sbjct: 190 NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS 249

Query: 133 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 192
           AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL
Sbjct: 250 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 309

Query: 193 INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL 252
           INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL
Sbjct: 310 INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL 369

Query: 253 AANYLLENSGDFDD 267
           AANYLLENSGDFDD
Sbjct: 370 AANYLLENSGDFDD 383

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BLAST of Carg11257 vs. NCBI nr
Match: XP_022934936.1 (ubiquitin receptor RAD23b-like [Cucurbita moschata])

HSP 1 Score: 497.7 bits (1280), Expect = 2.5e-137
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 14  TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 73
           TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN
Sbjct: 131 TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 190

Query: 74  PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSA 133
           PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSA
Sbjct: 191 PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSA 250

Query: 134 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 193
           GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI
Sbjct: 251 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 310

Query: 194 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 253
           NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA
Sbjct: 311 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 370

Query: 254 ANYLLENSGDFDD 267
           ANYLLENSGDFDD
Sbjct: 371 ANYLLENSGDFDD 383

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BLAST of Carg11257 vs. NCBI nr
Match: XP_022998454.1 (ubiquitin receptor RAD23b-like [Cucurbita maxima])

HSP 1 Score: 463.8 bits (1192), Expect = 4.0e-127
Identity = 240/259 (92.66%), Postives = 246/259 (94.98%), Query Frame = 0


Query: 13  NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN 72
           NTTSTSDR TD++QTDTYGQAASNLVAGNNLE+TIQQ+MDMGGGNWDRETVVRALRAAYN
Sbjct: 130 NTTSTSDRATDNVQTDTYGQAASNLVAGNNLEETIQQIMDMGGGNWDRETVVRALRAAYN 189

Query: 73  NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS 132
           NPERAVDYLYSGIPESAEVAVPVGRFGSG AT T+ SLPAPASGAPNTAPLNMFPQ AL 
Sbjct: 190 NPERAVDYLYSGIPESAEVAVPVGRFGSGQATGTDGSLPAPASGAPNTAPLNMFPQ-ALP 249

Query: 133 AGGG-----GLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHA 192
           AGGG      LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHA
Sbjct: 250 AGGGXXXXXNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHA 309

Query: 193 EFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACD 252
           EFLQLINEPVDNFEGEMFEQA+PDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACD
Sbjct: 310 EFLQLINEPVDNFEGEMFEQADPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACD 369

Query: 253 RNEELAANYLLENSGDFDD 267
           RNEELAANYLLENSGDFDD
Sbjct: 370 RNEELAANYLLENSGDFDD 387

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BLAST of Carg11257 vs. NCBI nr
Match: XP_023525748.1 (ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.3 bits (1170), Expect = 1.4e-124
Identity = 235/254 (92.52%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 18  SDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERA 77
           SDR TD++QTDTYGQAASNLVAGNNLE+TIQQ+MDMGGGNWDRETVVRALRAAYNNPERA
Sbjct: 134 SDRATDNVQTDTYGQAASNLVAGNNLEETIQQIMDMGGGNWDRETVVRALRAAYNNPERA 193

Query: 78  VDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGG- 137
           VDYLYSGIPESAEVAVPVGRFGSG AT T+ SLPAPASGAPNTAPLNMFPQ AL AGGG 
Sbjct: 194 VDYLYSGIPESAEVAVPVGRFGSGQATGTDGSLPAPASGAPNTAPLNMFPQ-ALPAGGGX 253

Query: 138 ----GLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 197
                LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL
Sbjct: 254 XXXXNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 313

Query: 198 INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL 257
           INEPVDNFEGEMFEQA+PDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEEL
Sbjct: 314 INEPVDNFEGEMFEQADPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEEL 373

Query: 258 AANYLLENSGDFDD 267
           AANYLLENSGDFDD
Sbjct: 374 AANYLLENSGDFDD 386

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BLAST of Carg11257 vs. TAIR10
Match: AT1G79650.4 (Rad23 UV excision repair protein family)

HSP 1 Score: 352.4 bits (903), Expect = 2.4e-97
Identity = 185/247 (74.90%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           QTDTYGQAAS LV+G++LEQ +QQ+M+MGGG+WD+ETV RALRAAYNNPERAVDYLYSGI
Sbjct: 155 QTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 214

Query: 86  PESAEVAVPVGR---FGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGGG-LGSL 145
           P++AEVAVPV      GSG      A+  APASG PN++PL++FPQE ++A G G LG+L
Sbjct: 215 PQTAEVAVPVPEAQIAGSG------AAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTL 274

Query: 146 EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD--N 205
           EFLRNN QFQ LRTMVH+NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL+NEP +  +
Sbjct: 275 EFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSD 334

Query: 206 FEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLE 265
            EG+MF+Q E +MPHAINVTP EQ AI+RLEAMGFDRALVIEAFLACDRNEELAANYLLE
Sbjct: 335 GEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLE 394

Query: 266 NSGDFDD 267
           NSGDF+D
Sbjct: 395 NSGDFED 395

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BLAST of Carg11257 vs. TAIR10
Match: AT1G16190.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 325.1 bits (832), Expect = 4.0e-89
Identity = 169/256 (66.02%), Postives = 213/256 (83.20%), Query Frame = 0


Query: 14  TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 73
           + ST  +   + Q+DTYGQAAS LV+G+++EQ +QQ+M+MGGG+WD+ETV RALRAAYNN
Sbjct: 117 SNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNN 176

Query: 74  PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS- 133
           PERAVDYLYSGIPE+  V +P     SG  +  E + P P SG PN++PL++FPQEA+S 
Sbjct: 177 PERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAP-PPSGGPNSSPLDLFPQEAVSD 236

Query: 134 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 193
           A GG LG+LEFLR N QFQ LR+MV++NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL
Sbjct: 237 AAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQL 296

Query: 194 INEPVDNFEG--EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNE 253
           +NEP +  +G  ++F+Q + +MPH++NVTP+EQ +IERLEAMGFDRA+VIEAFL+CDRNE
Sbjct: 297 LNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNE 356

Query: 254 ELAANYLLENSGDFDD 267
           ELAANYLLE+S DF+D
Sbjct: 357 ELAANYLLEHSADFED 368

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BLAST of Carg11257 vs. TAIR10
Match: AT5G38470.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-76
Identity = 156/253 (61.66%), Postives = 189/253 (74.70%), Query Frame = 0


Query: 25  MQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSG 84
           +QTD YGQAASNLVAG  LE T+QQ++DMGGG+WDR+TVVRALRAA+NNPERAV+YLYSG
Sbjct: 130 VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSG 189

Query: 85  IPESAEVAVPVGRFGSGPATETEASLP--APASGA--------PNTAPLNMFPQEALSA- 144
           IP  AE+  PV +    PAT  +A+ P   P   A              N+FPQ   +A 
Sbjct: 190 IPAQAEIP-PVAQ---APATGEQAANPLAQPQQAAXXXXXXXXXXXXXXNLFPQGMPAAD 249

Query: 145 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 204
            G G G+L+FLRN+ QFQALR MV  NPQILQPMLQELGKQNPQL+RLIQ+H A+FL+LI
Sbjct: 250 AGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLI 309

Query: 205 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 264
           NEPV+  E  M EQ E  MP A+ VTP+E+ AIERLE MGFDRA+V+E F AC++NEELA
Sbjct: 310 NEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELA 369

Query: 265 ANYLLENSGDFDD 267
           ANYLL++  +F+D
Sbjct: 370 ANYLLDHMHEFED 377

[Close]

BLAST of Carg11257 vs. TAIR10
Match: AT3G02540.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-72
Identity = 151/253 (59.68%), Postives = 181/253 (71.54%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           Q D YGQAASNL AG+NLE TIQQ++DMGGG WDRETVV ALRAA+NNPERAV+YLY+GI
Sbjct: 170 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGI 229

Query: 86  PESAEVAVPVGRFGSGPA-----TETEASLPAPASGAPNTAPLNMFPQEALSAGGG-GLG 145
           PE AEV  PV R  +                      PN  PL++FPQ   + GG  G G
Sbjct: 230 PEQAEVP-PVARPPASAGXXXXXXXXXXXXXXXXXXGPNANPLDLFPQGLPNVGGNPGAG 289

Query: 146 SLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD- 205
           +L+FLRN+ QFQALR MV  NPQ+LQPMLQELGKQNP L+RLIQDH A+FL+LINEPV+ 
Sbjct: 290 TLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 349

Query: 206 -----NFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 265
                N  G+M   A    P AI VT +E+ AIERLEAMGF+RALV+E F AC++NEELA
Sbjct: 350 GGESGNLLGQM--AAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELA 409

Query: 266 ANYLLENSGDFDD 267
           ANYLL++  +F++
Sbjct: 410 ANYLLDHMHEFEE 419

[Close]

BLAST of Carg11257 vs. TAIR10
Match: AT5G16090.1 (INVOLVED IN: nucleotide-excision repair)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-14
Identity = 42/98 (42.86%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 163 ILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDE 222
           I +  L+E+ KQNP L ++I+ + A F+ ++N+     + E+  Q E D+   + VT  +
Sbjct: 74  ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNKESFERDNEL-AQPEEDLLQ-LQVTAVD 133

Query: 223 QAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 261
             AI RLEAMGF+R +V+E FLAC++NE+LAAN+LL++
Sbjct: 134 DEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDH 169

[Close]

BLAST of Carg11257 vs. Swiss-Prot
Match: sp|Q84L33|RD23B_ARATH (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3)

HSP 1 Score: 349.0 bits (894), Expect = 4.7e-95
Identity = 183/245 (74.69%), Postives = 212/245 (86.53%), Query Frame = 0


Query: 28  DTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPE 87
           DTYGQAAS LV+G++LEQ +QQ+M+MGGG+WD+ETV RALRAAYNNPERAVDYLYSGIP+
Sbjct: 133 DTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQ 192

Query: 88  SAEVAVPVGR---FGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGGG-LGSLEF 147
           +AEVAVPV      GSG      A+  APASG PN++PL++FPQE ++A G G LG+LEF
Sbjct: 193 TAEVAVPVPEAQIAGSG------AAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEF 252

Query: 148 LRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD--NFE 207
           LRNN QFQ LRTMVH+NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL+NEP +  + E
Sbjct: 253 LRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGE 312

Query: 208 GEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS 267
           G+MF+Q E +MPHAINVTP EQ AI+RLEAMGFDRALVIEAFLACDRNEELAANYLLENS
Sbjct: 313 GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENS 371

[Close]

BLAST of Carg11257 vs. Swiss-Prot
Match: sp|Q84L32|RD23A_ARATH (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2)

HSP 1 Score: 325.1 bits (832), Expect = 7.3e-88
Identity = 169/256 (66.02%), Postives = 213/256 (83.20%), Query Frame = 0


Query: 14  TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 73
           + ST  +   + Q+DTYGQAAS LV+G+++EQ +QQ+M+MGGG+WD+ETV RALRAAYNN
Sbjct: 117 SNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNN 176

Query: 74  PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS- 133
           PERAVDYLYSGIPE+  V +P     SG  +  E + P P SG PN++PL++FPQEA+S 
Sbjct: 177 PERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAP-PPSGGPNSSPLDLFPQEAVSD 236

Query: 134 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 193
           A GG LG+LEFLR N QFQ LR+MV++NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL
Sbjct: 237 AAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQL 296

Query: 194 INEPVDNFEG--EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNE 253
           +NEP +  +G  ++F+Q + +MPH++NVTP+EQ +IERLEAMGFDRA+VIEAFL+CDRNE
Sbjct: 297 LNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNE 356

Query: 254 ELAANYLLENSGDFDD 267
           ELAANYLLE+S DF+D
Sbjct: 357 ELAANYLLEHSADFED 368

[Close]

BLAST of Carg11257 vs. Swiss-Prot
Match: sp|Q84L30|RD23D_ARATH (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2)

HSP 1 Score: 282.7 bits (722), Expect = 4.2e-75
Identity = 156/253 (61.66%), Postives = 189/253 (74.70%), Query Frame = 0


Query: 25  MQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSG 84
           +QTD YGQAASNLVAG  LE T+QQ++DMGGG+WDR+TVVRALRAA+NNPERAV+YLYSG
Sbjct: 130 VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSG 189

Query: 85  IPESAEVAVPVGRFGSGPATETEASLP--APASGA--------PNTAPLNMFPQEALSA- 144
           IP  AE+  PV +    PAT  +A+ P   P   A              N+FPQ   +A 
Sbjct: 190 IPAQAEIP-PVAQ---APATGEQAANPLAQPQQAAXXXXXXXXXXXXXXNLFPQGMPAAD 249

Query: 145 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 204
            G G G+L+FLRN+ QFQALR MV  NPQILQPMLQELGKQNPQL+RLIQ+H A+FL+LI
Sbjct: 250 AGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLI 309

Query: 205 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 264
           NEPV+  E  M EQ E  MP A+ VTP+E+ AIERLE MGFDRA+V+E F AC++NEELA
Sbjct: 310 NEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELA 369

Query: 265 ANYLLENSGDFDD 267
           ANYLL++  +F+D
Sbjct: 370 ANYLLDHMHEFED 377

[Close]

BLAST of Carg11257 vs. Swiss-Prot
Match: sp|Q84L31|RD23C_ARATH (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-71
Identity = 151/253 (59.68%), Postives = 181/253 (71.54%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           Q D YGQAASNL AG+NLE TIQQ++DMGGG WDRETVV ALRAA+NNPERAV+YLY+GI
Sbjct: 170 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGI 229

Query: 86  PESAEVAVPVGRFGSGPA-----TETEASLPAPASGAPNTAPLNMFPQEALSAGGG-GLG 145
           PE AEV  PV R  +                      PN  PL++FPQ   + GG  G G
Sbjct: 230 PEQAEVP-PVARPPASAGXXXXXXXXXXXXXXXXXXGPNANPLDLFPQGLPNVGGNPGAG 289

Query: 146 SLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD- 205
           +L+FLRN+ QFQALR MV  NPQ+LQPMLQELGKQNP L+RLIQDH A+FL+LINEPV+ 
Sbjct: 290 TLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 349

Query: 206 -----NFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 265
                N  G+M   A    P AI VT +E+ AIERLEAMGF+RALV+E F AC++NEELA
Sbjct: 350 GGESGNLLGQM--AAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELA 409

Query: 266 ANYLLENSGDFDD 267
           ANYLL++  +F++
Sbjct: 410 ANYLLDHMHEFEE 419

[Close]

BLAST of Carg11257 vs. Swiss-Prot
Match: sp|Q40742|RAD23_ORYSJ (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2)

HSP 1 Score: 248.8 bits (634), Expect = 6.6e-65
Identity = 132/248 (53.23%), Postives = 173/248 (69.76%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           + D YGQA SNLVAG+NLE TIQ +++MGGG WDR+ V+ AL AA+NNPERAV+YLYSG+
Sbjct: 141 EADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGV 200

Query: 86  PESAEVAVPVGRFGSGPATE----TEASLPAPASGAPNTAPLNMFPQEA--LSAGGGGLG 145
           PE  ++ VP         T+    T+ + P+  S  PN +PL++FPQ     S    GLG
Sbjct: 201 PEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLG 260

Query: 146 SLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDN 205
           +L+ LRNN QF+ L ++V  NPQILQP+LQELGKQ      LIQ++ AEFL LINEP + 
Sbjct: 261 NLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQXXXXXXLIQENQAEFLHLINEPAEG 320

Query: 206 FEGE-MFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLL 265
            + E + +Q    MP  I VTP+E  AI RLEAMGFDRALV++ F AC+++E+LAANYLL
Sbjct: 321 DDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLL 380

Query: 266 ENSGDFDD 267
           ++  +FDD
Sbjct: 381 DHMNEFDD 388

[Close]

BLAST of Carg11257 vs. TrEMBL
Match: tr|A0A0A0LF05|A0A0A0LF05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710740 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 4.7e-124
Identity = 232/245 (94.69%), Postives = 235/245 (95.92%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           QTDTYGQAASNLVAGNNLEQT+QQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI
Sbjct: 147 QTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 206

Query: 86  PESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGG----GGLGSL 145
           PESAEVAVPVGRFGSG ATET+AS+PAP SGAPNTAPLNMFPQEALSAG       LGSL
Sbjct: 207 PESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSAGSXXXXXNLGSL 266

Query: 146 EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFE 205
           EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFE
Sbjct: 267 EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFE 326

Query: 206 GEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS 265
           GEMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS
Sbjct: 327 GEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS 386

Query: 266 GDFDD 267
           GDFDD
Sbjct: 387 GDFDD 391

[Close]

BLAST of Carg11257 vs. TrEMBL
Match: tr|A0A1S3CI18|A0A1S3CI18_CUCME (ubiquitin receptor RAD23b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 3.7e-121
Identity = 228/244 (93.44%), Postives = 231/244 (94.67%), Query Frame = 0


Query: 27  TDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIP 86
           TDTYGQAASNLVAGNNLEQT+QQLMDMGGG WDRETVVRALRAAYNNPERAVDYLYSGIP
Sbjct: 144 TDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDRETVVRALRAAYNNPERAVDYLYSGIP 203

Query: 87  ESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS----AGGGGLGSLE 146
           ESAEVAVPVGRFGSG ATET+AS+PAP SGAPNTAPLNMFPQEALS         LGSLE
Sbjct: 204 ESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSXXXXXXXXXLGSLE 263

Query: 147 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 206
           FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG
Sbjct: 264 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 323

Query: 207 EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 266
           EMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG
Sbjct: 324 EMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 383

[Close]

BLAST of Carg11257 vs. TrEMBL
Match: tr|A0A1S3CIK2|A0A1S3CIK2_CUCME (ubiquitin receptor RAD23b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 3.7e-121
Identity = 228/244 (93.44%), Postives = 231/244 (94.67%), Query Frame = 0


Query: 27  TDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIP 86
           TDTYGQAASNLVAGNNLEQT+QQLMDMGGG WDRETVVRALRAAYNNPERAVDYLYSGIP
Sbjct: 121 TDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDRETVVRALRAAYNNPERAVDYLYSGIP 180

Query: 87  ESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS----AGGGGLGSLE 146
           ESAEVAVPVGRFGSG ATET+AS+PAP SGAPNTAPLNMFPQEALS         LGSLE
Sbjct: 181 ESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSXXXXXXXXXLGSLE 240

Query: 147 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 206
           FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG
Sbjct: 241 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 300

Query: 207 EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 266
           EMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG
Sbjct: 301 EMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 360

[Close]

BLAST of Carg11257 vs. TrEMBL
Match: tr|A0A1R3HJJ8|A0A1R3HJJ8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18861 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.8e-107
Identity = 202/246 (82.11%), Postives = 224/246 (91.06%), Query Frame = 0


Query: 22  TDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYL 81
           T ++ TDTY QAASNLVAGNNLEQTIQQLMDMGGGNWD+ETV RALRAAYNNPERAVDYL
Sbjct: 128 TANLPTDTYSQAASNLVAGNNLEQTIQQLMDMGGGNWDKETVTRALRAAYNNPERAVDYL 187

Query: 82  YSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS-AGGGGLGS 141
           YSGIPESAEVAVPV RF +G ATET A+  AP SGAPN++PLNMFPQE ++ A  GGLGS
Sbjct: 188 YSGIPESAEVAVPVARFSTGQATETGAAPAAPVSGAPNSSPLNMFPQETVAGAAAGGLGS 247

Query: 142 LEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNF 201
           L+FLRNN QFQALR+MV +NPQILQPMLQELGKQNPQLLRLIQ+HHAEFLQLINEP++  
Sbjct: 248 LDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHHAEFLQLINEPLEGS 307

Query: 202 EGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 261
           EG++F+QA+ +MPHAINVTP EQ AIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN
Sbjct: 308 EGDIFDQADQEMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 367

Query: 262 SGDFDD 267
           +GDF+D
Sbjct: 368 AGDFED 373

[Close]

BLAST of Carg11257 vs. TrEMBL
Match: tr|A0A1R3HAL9|A0A1R3HAL9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30171 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.8e-107
Identity = 202/246 (82.11%), Postives = 224/246 (91.06%), Query Frame = 0


Query: 22  TDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYL 81
           T ++ TDTY QAASNLVAGNNLEQTIQQLMDMGGGNWD+ETV RALRAAYNNPERAVDYL
Sbjct: 128 TANLPTDTYSQAASNLVAGNNLEQTIQQLMDMGGGNWDKETVTRALRAAYNNPERAVDYL 187

Query: 82  YSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS-AGGGGLGS 141
           YSGIPESAEVAVPV RF +G ATET A+  AP SGAPN++PLNMFPQE ++ A  GGLGS
Sbjct: 188 YSGIPESAEVAVPVARFSTGQATETGAAPAAPVSGAPNSSPLNMFPQETVAGAAAGGLGS 247

Query: 142 LEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNF 201
           L+FLRNN QFQALR+MV +NPQILQPMLQELGKQNPQLLRLIQ+HHAEFLQLINEP++  
Sbjct: 248 LDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHHAEFLQLINEPLEGS 307

Query: 202 EGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 261
           EG++F+QA+ +MPHAINVTP EQ AIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN
Sbjct: 308 EGDIFDQADQEMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 367

Query: 262 SGDFDD 267
           +GDF+D
Sbjct: 368 AGDFED 373

The following BLAST results are available for this feature:

BLAST of Carg11257 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983432.1	2.4e-140	100.00	ubiquitin receptor RAD23b-like [Cucurbita maxima]	[more]
XP_023528872.1	5.1e-138	100.00	ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934936.1	2.5e-137	100.00	ubiquitin receptor RAD23b-like [Cucurbita moschata]	[more]
XP_022998454.1	4.0e-127	92.66	ubiquitin receptor RAD23b-like [Cucurbita maxima]	[more]
XP_023525748.1	1.4e-124	92.52	ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg11257 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79650.4	2.4e-97	74.90	Rad23 UV excision repair protein family	[more]
AT1G16190.1	4.0e-89	66.02	Rad23 UV excision repair protein family	[more]
AT5G38470.1	2.3e-76	61.66	Rad23 UV excision repair protein family	[more]
AT3G02540.1	2.0e-72	59.68	Rad23 UV excision repair protein family	[more]
AT5G16090.1	5.6e-14	42.86	INVOLVED IN: nucleotide-excision repair	[more]

BLAST of Carg11257 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84L33\|RD23B_ARATH	4.7e-95	74.69	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3	[more]
sp\|Q84L32\|RD23A_ARATH	7.3e-88	66.02	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=...	[more]
sp\|Q84L30\|RD23D_ARATH	4.2e-75	61.66	Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2	[more]
sp\|Q84L31\|RD23C_ARATH	3.6e-71	59.68	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2	[more]
sp\|Q40742\|RAD23_ORYSJ	6.6e-65	53.23	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RA...	[more]

BLAST of Carg11257 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LF05\|A0A0A0LF05_CUCSA	4.7e-124	94.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710740 PE=4 SV=1	[more]
tr\|A0A1S3CI18\|A0A1S3CI18_CUCME	3.7e-121	93.44	ubiquitin receptor RAD23b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=...	[more]
tr\|A0A1S3CIK2\|A0A1S3CIK2_CUCME	3.7e-121	93.44	ubiquitin receptor RAD23b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=...	[more]
tr\|A0A1R3HJJ8\|A0A1R3HJJ8_COCAP	1.8e-107	82.11	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18861 PE=4 ...	[more]
tr\|A0A1R3HAL9\|A0A1R3HAL9_9ROSI	1.8e-107	82.11	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30171 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003684	damaged DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289	nucleotide-excision repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR009060	UBA-like_sf
IPR036353	XPC-bd_sf
IPR015360	XPC-bd
IPR015940	UBA
IPR006636	STI1_HS-bd
IPR004806	Rad23

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11257-RA	Carg11257-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004806	UV excision repair protein Rad23	PRINTS	PR01839	RAD23PROTEIN	coord: 248..263 score: 62.78 coord: 216..232 score: 61.5 coord: 233..247 score: 65.76 coord: 167..189 score: 59.68
IPR004806	UV excision repair protein Rad23	TIGRFAM	TIGR00601	TIGR00601	coord: 10..265 e-value: 2.0E-88 score: 295.1
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 139..182 e-value: 3.3E-7 score: 40.0
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 222..259 e-value: 1.3E-7 score: 41.3 coord: 43..83 e-value: 7.7E-7 score: 38.7
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 222..257 e-value: 9.2E-12 score: 44.5 coord: 43..81 e-value: 9.8E-17 score: 60.4
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 219..260 score: 15.848
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 41..84 score: 13.366
None	No IPR available	GENE3D	G3DSA:1.10.8.10		coord: 213..262 e-value: 3.8E-24 score: 86.5
None	No IPR available	GENE3D	G3DSA:1.10.8.10		coord: 36..86 e-value: 1.5E-22 score: 81.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..121
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 10..265
None	No IPR available	PANTHER	PTHR10621:SF26	UBIQUITIN RECEPTOR RAD23B-RELATED	coord: 10..265
None	No IPR available	CDD	cd14379	UBA1_Rad23_plant	coord: 37..86 e-value: 1.84888E-31 score: 111.165
IPR015360	XPC-binding domain	PFAM	PF09280	XPC-binding	coord: 141..196 e-value: 1.7E-24 score: 85.2
IPR036353	XPC-binding domain superfamily	GENE3D	G3DSA:1.10.10.540		coord: 130..197 e-value: 4.6E-27 score: 95.3
IPR036353	XPC-binding domain superfamily	SUPERFAMILY	SSF101238	XPC-binding domain	coord: 137..203
IPR009060	UBA-like superfamily	SUPERFAMILY	SSF46934	UBA-like	coord: 40..91
IPR009060	UBA-like superfamily	SUPERFAMILY	SSF46934	UBA-like	coord: 204..264

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11257	Cla017222	Watermelon (97103) v1	carwmB0816
Carg11257	Csa3G710740	Cucumber (Chinese Long) v2	carcuB0829
Carg11257	MELO3C024883	Melon (DHL92) v3.5.1	carmeB0811
Carg11257	ClCG10G012840	Watermelon (Charleston Gray)	carwcgB0792
Carg11257	CSPI03G30230	Wild cucumber (PI 183967)	carcpiB0850
Carg11257	Cucsa.177370	Cucumber (Gy14) v1	carcgyB0928
Carg11257	CmaCh14G010450	Cucurbita maxima (Rimu)	carcmaB1132
Carg11257	CmoCh14G010620	Cucurbita moschata (Rifu)	carcmoB1102
Carg11257	Lsi03G012510	Bottle gourd (USVL1VR-Ls)	carlsiB748
Carg11257	Cp4.1LG03g08960	Cucurbita pepo (Zucchini)	carcpeB1147
Carg11257	CsGy3G028030	Cucumber (Gy14) v2	carcgybB0802
Carg11257	MELO3C024883.2	Melon (DHL92) v3.6.1	carmedB0822
Carg11257	CsaV3_3G032680	Cucumber (Chinese Long) v3	carcucB0853
Carg11257	Cla97C10G195710	Watermelon (97103) v2	carwmbB0851
Carg11257	Bhi11G001241	Wax gourd	carwgoB0951

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11257	Carg04189	Silver-seed gourd	carcarB236

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11257	Silver-seed gourd	carcarB383
Carg11257	Cucurbita maxima (Rimu)	carcmaB1133
Carg11257	Cucurbita maxima (Rimu)	carcmaB1134
Carg11257	Cucurbita moschata (Rifu)	carcmoB1104
Carg11257	Cucurbita moschata (Rifu)	carcmoB1105
Carg11257	Cucurbita pepo (Zucchini)	carcpeB1144
Carg11257	Cucurbita pepo (Zucchini)	carcpeB1146
Carg11257	Bottle gourd (USVL1VR-Ls)	carlsiB747