Carg11257-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11257-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ubiquitin receptor RAD23b-like
Location	Cucurbita_argyrosperma_scaffold_013 : 950996 .. 953632 (-)
Sequence length	1193

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTTTGTTCTTGTTTTGCAGTGCCCCCAAGAACACTACGTCTACTTCAGACAGGGTGACAGATAGGTATGGCTTCTATTTCGTATTCATATTTTTTAACTTCAAGAGGCATGAAATTGGTTAGCAAGTCACCTTCTATTTCCTAGTATTAAATCTATGCTGCAATATAACACATATCAAATCTGATAAAAGCTACAGACTGAATTACTTTTATAGGAGTTCTTGATTATTAAGTATTGAGTAATATGTTTTCTCCTCTTTTGCTTTATTTATAAATGAAGCATTTTTCCTACTGGTGGGAAAGTTTCTCATTCTTTTTTCGGGGGGATCATTTGCAGTATGCAAACAGATACATATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAATCTGGAACAGACCATTCAACAATTAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCACTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGTATGTTTAAGTTGTATTCTATGCATTCTCTTGAAACCTGGTCATAATATTTTGTCACTAATTGTGTTTTTTTGTGTTCAGGGTATTCCGGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCCAGCCACTGAAACTGAGGCATCCCTTCCTGCACCTGCTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGTAAGTTGATGCATGAAAAACGCTTTTGTTGGATGCATGAAAAACGCTTTTGTTGGTTTGCTCACGTTCACTTATTTTTTATTGGGTTGCAATCATGCAGGAGGCACTTTCTGCTGGCGGTGGTGGCCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGGTACATAGTGCAACATCATTTATTGGGTTTTCCTTATTGATAAGCTCATTTGCTTTCTTTACTAGGTATCTTAGTGCATGGAGTGTCAAATCCGTTGTTTGGTCTAAGTCCCATTTTCACCTAATAGTTGTGTTAGTTTGCAACTTTTGACACGTTGGTTCATGTTAAATGTATAAACTAAAAAGTTACAAATATTTGATCTGAAGTATGCGTGTTGATTATATTTGTTCAGTCATATCATCCCATTATTTGTATATCACTTGTACACAGGCCCAAAATCTTGATTTATTTCTTATGGACTATGGATTTGAATAGAACTAAATGCGAAGTAGTTACTGAATGAGGTTTCTCATCATTATTCATATTATAGTTTCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGGTTTACACATTCTTCTGCTTTGAAATTTGCTTAGTGGTTATAATCAATTGGTTTTCCTAGAGTTAAATCTTTTGCTTCTGGTGGCAGCCCATGCTTCAAGAACTTGGAAAACAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGTTAATTAATGAACCTGTTGACAATTTTGAGGGGTCGGTCTTAAACTACTATGATCTGATTGATTTTAAATCTAGTTAATTTTGCAGTTCTTTAGTTGTGATCAATCTCGTGCATATAAGATGATAGTTGCATAGATAACCCGTCTTATTTTTTCTCCCATCACCAAATTCGCAGCACTTCTGCTGTAGGTTCCTGCGTGGGACAATAATACATAATCAGGTCAGGTGTATCTATCTTTAGAACAAGCCATAGGTAAATTGGTTAAGCCATAGATTGAGATCAGAGGTTCAAATCCCTCCGTTTGAACTACAAAAACATAGTCATCGGTAGATTAAGAACTGTTTCTGGGACTGGTTTACACGAGATTTTGTTCACTCGATTGATTATTATTTCATTGGTTGAACCTCTTTTGATGTGACATCGCTTGCATCCATCTGTAGAACTATAAACTATGTTCTTTCTTTCAGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTTACTCCAGACGAACAGGCAGCCATTGAACGAGTACGAACTCCTTTATATTCCCTGAGACGTCTGTTTGTTTTCCCTCTTCAAACTAAATCTTTGTGCTCATCATTTTGCTGCTTGCTCCCCTGTATGTAGCTCGAGGCAATGGGATTCGATCGAGCCTTGGTGATCGAGGCATTTTTGGCATGCGATCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGACGATTAACAAAAGAAGAATTAATTAATGTTAACCGCTGTGGATTCATTATTTTTGGTGCTGAGGTGAATTGTTTCCCTTTTCAGCATTATTCCGAGTCTGTTCTTGCATTGCATTTTACATACTCCACTAATAAATAGGAAAATTAATTGTTCAAGTGTATGGTGTTTCCGATTTAGAGAATTGGAATCTTTATGTTTTATTTAAAAGCTCATTTGTTGGTAGCTAGTTCGTTACAACATTATTGCAGATAGATCATGAGATTTTATATACTTTTCTGATTATCGTGTAAATATAATTGTTGAAAAATATCAACAGATTTTGACATGACATTTTGTTTCTTGTGATATGTTTATGCTATTAACATAAATATATATATATATATATATATATATATATAT

mRNA sequence

ATGCATTTTTTGTTCTTGTTTTGCAGTGCCCCCAAGAACACTACGTCTACTTCAGACAGGGTGACAGATAGTATGCAAACAGATACATATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAATCTGGAACAGACCATTCAACAATTAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCACTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCGGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCCAGCCACTGAAACTGAGGCATCCCTTCCTGCACCTGCTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCGGTGGTGGCCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGTTTCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGCCCATGCTTCAAGAACTTGGAAAACAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGTTAATTAATGAACCTGTTGACAATTTTGAGGGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTTACTCCAGACGAACAGGCAGCCATTGAACGACTCGAGGCAATGGGATTCGATCGAGCCTTGGTGATCGAGGCATTTTTGGCATGCGATCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGACGATTAACAAAAGAAGAATTAATTAATGTTAACCGCTGTGGATTCATTATTTTTGGTGCTGAGGTGAATTGTTTCCCTTTTCAGCATTATTCCGAGTCTGTTCTTGCATTGCATTTTACATACTCCACTAATAAATAGGAAAATTAATTGTTCAAGTGTATGGTGTTTCCGATTTAGAGAATTGGAATCTTTATGTTTTATTTAAAAGCTCATTTGTTGGTAGCTAGTTCGTTACAACATTATTGCAGATAGATCATGAGATTTTATATACTTTTCTGATTATCGTGTAAATATAATTGTTGAAAAATATCAACAGATTTTGACATGACATTTTGTTTCTTGTGATATGTTTATGCTATTAACATAAATATATATATATATATATATATATATATATAT

Coding sequence (CDS)

ATGCATTTTTTGTTCTTGTTTTGCAGTGCCCCCAAGAACACTACGTCTACTTCAGACAGGGTGACAGATAGTATGCAAACAGATACATATGGTCAAGCTGCTTCAAATTTGGTCGCTGGTAATAATCTGGAACAGACCATTCAACAATTAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTGTTCGTGCACTAAGAGCTGCTTATAACAATCCAGAGCGAGCAGTGGATTACTTGTACTCTGGTATTCCGGAATCTGCAGAAGTTGCAGTACCAGTGGGTCGTTTTGGTTCTGGTCCAGCCACTGAAACTGAGGCATCCCTTCCTGCACCTGCTTCTGGAGCACCCAACACAGCCCCCTTGAATATGTTTCCTCAGGAGGCACTTTCTGCTGGCGGTGGTGGCCTTGGATCTCTTGAATTCCTTAGAAACAATCCGCAGTTTCAAGCCTTGCGGACGATGGTGCATACAAACCCTCAAATCTTACAGCCCATGCTTCAAGAACTTGGAAAACAGAATCCCCAGCTTTTGAGACTCATTCAGGATCATCATGCAGAGTTCCTTCAGTTAATTAATGAACCTGTTGACAATTTTGAGGGAGAAATGTTTGAACAGGCTGAGCCAGACATGCCTCATGCCATTAATGTTACTCCAGACGAACAGGCAGCCATTGAACGACTCGAGGCAATGGGATTCGATCGAGCCTTGGTGATCGAGGCATTTTTGGCATGCGATCGCAACGAGGAACTAGCAGCTAACTACTTACTGGAGAATTCTGGAGATTTTGACGATTAA

Protein sequence

MHFLFLFCSAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD

Homology

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BLAST of Carg11257-RA vs. NCBI nr
Match: XP_022983432.1 (ubiquitin receptor RAD23b-like [Cucurbita maxima])

HSP 1 Score: 507.7 bits (1306), Expect = 2.4e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 9   SAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALR 68
           SAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALR
Sbjct: 126 SAPKNTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALR 185

Query: 69  AAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQ 128
           AAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQ
Sbjct: 186 AAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQ 245

Query: 129 EALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAE 188
           EALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAE
Sbjct: 246 EALSAGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAE 305

Query: 189 FLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDR 248
           FLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDR
Sbjct: 306 FLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDR 365

Query: 249 NEELAANYLLENSGDFDD 267
           NEELAANYLLENSGDFDD
Sbjct: 366 NEELAANYLLENSGDFDD 383

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BLAST of Carg11257-RA vs. NCBI nr
Match: XP_023528872.1 (ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500.0 bits (1286), Expect = 5.1e-138
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 13  NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN 72
           NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN
Sbjct: 130 NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN 189

Query: 73  NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS 132
           NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS
Sbjct: 190 NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS 249

Query: 133 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 192
           AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL
Sbjct: 250 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 309

Query: 193 INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL 252
           INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL
Sbjct: 310 INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL 369

Query: 253 AANYLLENSGDFDD 267
           AANYLLENSGDFDD
Sbjct: 370 AANYLLENSGDFDD 383

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BLAST of Carg11257-RA vs. NCBI nr
Match: XP_022934936.1 (ubiquitin receptor RAD23b-like [Cucurbita moschata])

HSP 1 Score: 497.7 bits (1280), Expect = 2.5e-137
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 14  TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 73
           TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN
Sbjct: 131 TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 190

Query: 74  PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSA 133
           PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSA
Sbjct: 191 PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSA 250

Query: 134 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 193
           GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI
Sbjct: 251 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 310

Query: 194 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 253
           NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA
Sbjct: 311 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 370

Query: 254 ANYLLENSGDFDD 267
           ANYLLENSGDFDD
Sbjct: 371 ANYLLENSGDFDD 383

[Close]

BLAST of Carg11257-RA vs. NCBI nr
Match: XP_022998454.1 (ubiquitin receptor RAD23b-like [Cucurbita maxima])

HSP 1 Score: 463.8 bits (1192), Expect = 4.0e-127
Identity = 240/259 (92.66%), Postives = 246/259 (94.98%), Query Frame = 0


Query: 13  NTTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYN 72
           NTTSTSDR TD++QTDTYGQAASNLVAGNNLE+TIQQ+MDMGGGNWDRETVVRALRAAYN
Sbjct: 130 NTTSTSDRATDNVQTDTYGQAASNLVAGNNLEETIQQIMDMGGGNWDRETVVRALRAAYN 189

Query: 73  NPERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS 132
           NPERAVDYLYSGIPESAEVAVPVGRFGSG AT T+ SLPAPASGAPNTAPLNMFPQ AL 
Sbjct: 190 NPERAVDYLYSGIPESAEVAVPVGRFGSGQATGTDGSLPAPASGAPNTAPLNMFPQ-ALP 249

Query: 133 AGGG-----GLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHA 192
           AGGG      LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHA
Sbjct: 250 AGGGXXXXXNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHA 309

Query: 193 EFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACD 252
           EFLQLINEPVDNFEGEMFEQA+PDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACD
Sbjct: 310 EFLQLINEPVDNFEGEMFEQADPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACD 369

Query: 253 RNEELAANYLLENSGDFDD 267
           RNEELAANYLLENSGDFDD
Sbjct: 370 RNEELAANYLLENSGDFDD 387

[Close]

BLAST of Carg11257-RA vs. NCBI nr
Match: XP_023525748.1 (ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.3 bits (1170), Expect = 1.4e-124
Identity = 235/254 (92.52%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 18  SDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERA 77
           SDR TD++QTDTYGQAASNLVAGNNLE+TIQQ+MDMGGGNWDRETVVRALRAAYNNPERA
Sbjct: 134 SDRATDNVQTDTYGQAASNLVAGNNLEETIQQIMDMGGGNWDRETVVRALRAAYNNPERA 193

Query: 78  VDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGG- 137
           VDYLYSGIPESAEVAVPVGRFGSG AT T+ SLPAPASGAPNTAPLNMFPQ AL AGGG 
Sbjct: 194 VDYLYSGIPESAEVAVPVGRFGSGQATGTDGSLPAPASGAPNTAPLNMFPQ-ALPAGGGX 253

Query: 138 ----GLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 197
                LGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL
Sbjct: 254 XXXXNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 313

Query: 198 INEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEEL 257
           INEPVDNFEGEMFEQA+PDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEEL
Sbjct: 314 INEPVDNFEGEMFEQADPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEEL 373

Query: 258 AANYLLENSGDFDD 267
           AANYLLENSGDFDD
Sbjct: 374 AANYLLENSGDFDD 386

[Close]

BLAST of Carg11257-RA vs. TAIR10
Match: AT1G79650.4 (Rad23 UV excision repair protein family)

HSP 1 Score: 352.4 bits (903), Expect = 2.4e-97
Identity = 185/247 (74.90%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           QTDTYGQAAS LV+G++LEQ +QQ+M+MGGG+WD+ETV RALRAAYNNPERAVDYLYSGI
Sbjct: 155 QTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 214

Query: 86  PESAEVAVPVGR---FGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGGG-LGSL 145
           P++AEVAVPV      GSG      A+  APASG PN++PL++FPQE ++A G G LG+L
Sbjct: 215 PQTAEVAVPVPEAQIAGSG------AAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTL 274

Query: 146 EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD--N 205
           EFLRNN QFQ LRTMVH+NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL+NEP +  +
Sbjct: 275 EFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSD 334

Query: 206 FEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLE 265
            EG+MF+Q E +MPHAINVTP EQ AI+RLEAMGFDRALVIEAFLACDRNEELAANYLLE
Sbjct: 335 GEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLE 394

Query: 266 NSGDFDD 267
           NSGDF+D
Sbjct: 395 NSGDFED 395

[Close]

BLAST of Carg11257-RA vs. TAIR10
Match: AT1G16190.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 325.1 bits (832), Expect = 4.0e-89
Identity = 169/256 (66.02%), Postives = 213/256 (83.20%), Query Frame = 0


Query: 14  TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 73
           + ST  +   + Q+DTYGQAAS LV+G+++EQ +QQ+M+MGGG+WD+ETV RALRAAYNN
Sbjct: 117 SNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNN 176

Query: 74  PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS- 133
           PERAVDYLYSGIPE+  V +P     SG  +  E + P P SG PN++PL++FPQEA+S 
Sbjct: 177 PERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAP-PPSGGPNSSPLDLFPQEAVSD 236

Query: 134 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 193
           A GG LG+LEFLR N QFQ LR+MV++NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL
Sbjct: 237 AAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQL 296

Query: 194 INEPVDNFEG--EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNE 253
           +NEP +  +G  ++F+Q + +MPH++NVTP+EQ +IERLEAMGFDRA+VIEAFL+CDRNE
Sbjct: 297 LNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNE 356

Query: 254 ELAANYLLENSGDFDD 267
           ELAANYLLE+S DF+D
Sbjct: 357 ELAANYLLEHSADFED 368

[Close]

BLAST of Carg11257-RA vs. TAIR10
Match: AT5G38470.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-76
Identity = 156/253 (61.66%), Postives = 189/253 (74.70%), Query Frame = 0


Query: 25  MQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSG 84
           +QTD YGQAASNLVAG  LE T+QQ++DMGGG+WDR+TVVRALRAA+NNPERAV+YLYSG
Sbjct: 130 VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSG 189

Query: 85  IPESAEVAVPVGRFGSGPATETEASLP--APASGA--------PNTAPLNMFPQEALSA- 144
           IP  AE+  PV +    PAT  +A+ P   P   A              N+FPQ   +A 
Sbjct: 190 IPAQAEIP-PVAQ---APATGEQAANPLAQPQQAAXXXXXXXXXXXXXXNLFPQGMPAAD 249

Query: 145 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 204
            G G G+L+FLRN+ QFQALR MV  NPQILQPMLQELGKQNPQL+RLIQ+H A+FL+LI
Sbjct: 250 AGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLI 309

Query: 205 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 264
           NEPV+  E  M EQ E  MP A+ VTP+E+ AIERLE MGFDRA+V+E F AC++NEELA
Sbjct: 310 NEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELA 369

Query: 265 ANYLLENSGDFDD 267
           ANYLL++  +F+D
Sbjct: 370 ANYLLDHMHEFED 377

[Close]

BLAST of Carg11257-RA vs. TAIR10
Match: AT3G02540.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-72
Identity = 151/253 (59.68%), Postives = 181/253 (71.54%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           Q D YGQAASNL AG+NLE TIQQ++DMGGG WDRETVV ALRAA+NNPERAV+YLY+GI
Sbjct: 170 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGI 229

Query: 86  PESAEVAVPVGRFGSGPA-----TETEASLPAPASGAPNTAPLNMFPQEALSAGGG-GLG 145
           PE AEV  PV R  +                      PN  PL++FPQ   + GG  G G
Sbjct: 230 PEQAEVP-PVARPPASAGXXXXXXXXXXXXXXXXXXGPNANPLDLFPQGLPNVGGNPGAG 289

Query: 146 SLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD- 205
           +L+FLRN+ QFQALR MV  NPQ+LQPMLQELGKQNP L+RLIQDH A+FL+LINEPV+ 
Sbjct: 290 TLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 349

Query: 206 -----NFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 265
                N  G+M   A    P AI VT +E+ AIERLEAMGF+RALV+E F AC++NEELA
Sbjct: 350 GGESGNLLGQM--AAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELA 409

Query: 266 ANYLLENSGDFDD 267
           ANYLL++  +F++
Sbjct: 410 ANYLLDHMHEFEE 419

[Close]

BLAST of Carg11257-RA vs. TAIR10
Match: AT5G16090.1 (INVOLVED IN: nucleotide-excision repair)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-14
Identity = 42/98 (42.86%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 163 ILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPDE 222
           I +  L+E+ KQNP L ++I+ + A F+ ++N+     + E+  Q E D+   + VT  +
Sbjct: 74  ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNKESFERDNEL-AQPEEDLLQ-LQVTAVD 133

Query: 223 QAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 261
             AI RLEAMGF+R +V+E FLAC++NE+LAAN+LL++
Sbjct: 134 DEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDH 169

[Close]

BLAST of Carg11257-RA vs. Swiss-Prot
Match: sp|Q84L33|RD23B_ARATH (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3)

HSP 1 Score: 349.0 bits (894), Expect = 4.7e-95
Identity = 183/245 (74.69%), Postives = 212/245 (86.53%), Query Frame = 0


Query: 28  DTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPE 87
           DTYGQAAS LV+G++LEQ +QQ+M+MGGG+WD+ETV RALRAAYNNPERAVDYLYSGIP+
Sbjct: 133 DTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQ 192

Query: 88  SAEVAVPVGR---FGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGGGG-LGSLEF 147
           +AEVAVPV      GSG      A+  APASG PN++PL++FPQE ++A G G LG+LEF
Sbjct: 193 TAEVAVPVPEAQIAGSG------AAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEF 252

Query: 148 LRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD--NFE 207
           LRNN QFQ LRTMVH+NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL+NEP +  + E
Sbjct: 253 LRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGE 312

Query: 208 GEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS 267
           G+MF+Q E +MPHAINVTP EQ AI+RLEAMGFDRALVIEAFLACDRNEELAANYLLENS
Sbjct: 313 GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENS 371

[Close]

BLAST of Carg11257-RA vs. Swiss-Prot
Match: sp|Q84L32|RD23A_ARATH (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2)

HSP 1 Score: 325.1 bits (832), Expect = 7.3e-88
Identity = 169/256 (66.02%), Postives = 213/256 (83.20%), Query Frame = 0


Query: 14  TTSTSDRVTDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNN 73
           + ST  +   + Q+DTYGQAAS LV+G+++EQ +QQ+M+MGGG+WD+ETV RALRAAYNN
Sbjct: 117 SNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNN 176

Query: 74  PERAVDYLYSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS- 133
           PERAVDYLYSGIPE+  V +P     SG  +  E + P P SG PN++PL++FPQEA+S 
Sbjct: 177 PERAVDYLYSGIPET--VTIPATNL-SGVGSGRELTAP-PPSGGPNSSPLDLFPQEAVSD 236

Query: 134 AGGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQL 193
           A GG LG+LEFLR N QFQ LR+MV++NPQILQPMLQELGKQNPQLLRLIQ++ AEFLQL
Sbjct: 237 AAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQL 296

Query: 194 INEPVDNFEG--EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNE 253
           +NEP +  +G  ++F+Q + +MPH++NVTP+EQ +IERLEAMGFDRA+VIEAFL+CDRNE
Sbjct: 297 LNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNE 356

Query: 254 ELAANYLLENSGDFDD 267
           ELAANYLLE+S DF+D
Sbjct: 357 ELAANYLLEHSADFED 368

[Close]

BLAST of Carg11257-RA vs. Swiss-Prot
Match: sp|Q84L30|RD23D_ARATH (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2)

HSP 1 Score: 282.7 bits (722), Expect = 4.2e-75
Identity = 156/253 (61.66%), Postives = 189/253 (74.70%), Query Frame = 0


Query: 25  MQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSG 84
           +QTD YGQAASNLVAG  LE T+QQ++DMGGG+WDR+TVVRALRAA+NNPERAV+YLYSG
Sbjct: 130 VQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSG 189

Query: 85  IPESAEVAVPVGRFGSGPATETEASLP--APASGA--------PNTAPLNMFPQEALSA- 144
           IP  AE+  PV +    PAT  +A+ P   P   A              N+FPQ   +A 
Sbjct: 190 IPAQAEIP-PVAQ---APATGEQAANPLAQPQQAAXXXXXXXXXXXXXXNLFPQGMPAAD 249

Query: 145 GGGGLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLI 204
            G G G+L+FLRN+ QFQALR MV  NPQILQPMLQELGKQNPQL+RLIQ+H A+FL+LI
Sbjct: 250 AGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLI 309

Query: 205 NEPVDNFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 264
           NEPV+  E  M EQ E  MP A+ VTP+E+ AIERLE MGFDRA+V+E F AC++NEELA
Sbjct: 310 NEPVEGEENVM-EQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELA 369

Query: 265 ANYLLENSGDFDD 267
           ANYLL++  +F+D
Sbjct: 370 ANYLLDHMHEFED 377

[Close]

BLAST of Carg11257-RA vs. Swiss-Prot
Match: sp|Q84L31|RD23C_ARATH (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-71
Identity = 151/253 (59.68%), Postives = 181/253 (71.54%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           Q D YGQAASNL AG+NLE TIQQ++DMGGG WDRETVV ALRAA+NNPERAV+YLY+GI
Sbjct: 170 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGI 229

Query: 86  PESAEVAVPVGRFGSGPA-----TETEASLPAPASGAPNTAPLNMFPQEALSAGGG-GLG 145
           PE AEV  PV R  +                      PN  PL++FPQ   + GG  G G
Sbjct: 230 PEQAEVP-PVARPPASAGXXXXXXXXXXXXXXXXXXGPNANPLDLFPQGLPNVGGNPGAG 289

Query: 146 SLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVD- 205
           +L+FLRN+ QFQALR MV  NPQ+LQPMLQELGKQNP L+RLIQDH A+FL+LINEPV+ 
Sbjct: 290 TLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 349

Query: 206 -----NFEGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELA 265
                N  G+M   A    P AI VT +E+ AIERLEAMGF+RALV+E F AC++NEELA
Sbjct: 350 GGESGNLLGQM--AAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELA 409

Query: 266 ANYLLENSGDFDD 267
           ANYLL++  +F++
Sbjct: 410 ANYLLDHMHEFEE 419

[Close]

BLAST of Carg11257-RA vs. Swiss-Prot
Match: sp|Q40742|RAD23_ORYSJ (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2)

HSP 1 Score: 248.8 bits (634), Expect = 6.6e-65
Identity = 132/248 (53.23%), Postives = 173/248 (69.76%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           + D YGQA SNLVAG+NLE TIQ +++MGGG WDR+ V+ AL AA+NNPERAV+YLYSG+
Sbjct: 141 EADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGV 200

Query: 86  PESAEVAVPVGRFGSGPATE----TEASLPAPASGAPNTAPLNMFPQEA--LSAGGGGLG 145
           PE  ++ VP         T+    T+ + P+  S  PN +PL++FPQ     S    GLG
Sbjct: 201 PEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLG 260

Query: 146 SLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDN 205
           +L+ LRNN QF+ L ++V  NPQILQP+LQELGKQ      LIQ++ AEFL LINEP + 
Sbjct: 261 NLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQXXXXXXLIQENQAEFLHLINEPAEG 320

Query: 206 FEGE-MFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLL 265
            + E + +Q    MP  I VTP+E  AI RLEAMGFDRALV++ F AC+++E+LAANYLL
Sbjct: 321 DDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLL 380

Query: 266 ENSGDFDD 267
           ++  +FDD
Sbjct: 381 DHMNEFDD 388

[Close]

BLAST of Carg11257-RA vs. TrEMBL
Match: tr|A0A0A0LF05|A0A0A0LF05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710740 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 4.7e-124
Identity = 232/245 (94.69%), Postives = 235/245 (95.92%), Query Frame = 0


Query: 26  QTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 85
           QTDTYGQAASNLVAGNNLEQT+QQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI
Sbjct: 147 QTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGI 206

Query: 86  PESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALSAGG----GGLGSL 145
           PESAEVAVPVGRFGSG ATET+AS+PAP SGAPNTAPLNMFPQEALSAG       LGSL
Sbjct: 207 PESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSAGSXXXXXNLGSL 266

Query: 146 EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFE 205
           EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFE
Sbjct: 267 EFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFE 326

Query: 206 GEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS 265
           GEMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS
Sbjct: 327 GEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENS 386

Query: 266 GDFDD 267
           GDFDD
Sbjct: 387 GDFDD 391

[Close]

BLAST of Carg11257-RA vs. TrEMBL
Match: tr|A0A1S3CI18|A0A1S3CI18_CUCME (ubiquitin receptor RAD23b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 3.7e-121
Identity = 228/244 (93.44%), Postives = 231/244 (94.67%), Query Frame = 0


Query: 27  TDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIP 86
           TDTYGQAASNLVAGNNLEQT+QQLMDMGGG WDRETVVRALRAAYNNPERAVDYLYSGIP
Sbjct: 144 TDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDRETVVRALRAAYNNPERAVDYLYSGIP 203

Query: 87  ESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS----AGGGGLGSLE 146
           ESAEVAVPVGRFGSG ATET+AS+PAP SGAPNTAPLNMFPQEALS         LGSLE
Sbjct: 204 ESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSXXXXXXXXXLGSLE 263

Query: 147 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 206
           FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG
Sbjct: 264 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 323

Query: 207 EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 266
           EMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG
Sbjct: 324 EMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 383

[Close]

BLAST of Carg11257-RA vs. TrEMBL
Match: tr|A0A1S3CIK2|A0A1S3CIK2_CUCME (ubiquitin receptor RAD23b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 3.7e-121
Identity = 228/244 (93.44%), Postives = 231/244 (94.67%), Query Frame = 0


Query: 27  TDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIP 86
           TDTYGQAASNLVAGNNLEQT+QQLMDMGGG WDRETVVRALRAAYNNPERAVDYLYSGIP
Sbjct: 121 TDTYGQAASNLVAGNNLEQTVQQLMDMGGGTWDRETVVRALRAAYNNPERAVDYLYSGIP 180

Query: 87  ESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS----AGGGGLGSLE 146
           ESAEVAVPVGRFGSG ATET+AS+PAP SGAPNTAPLNMFPQEALS         LGSLE
Sbjct: 181 ESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEALSXXXXXXXXXLGSLE 240

Query: 147 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 206
           FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG
Sbjct: 241 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEG 300

Query: 207 EMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 266
           EMFEQAEPDMPHAINVTP EQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG
Sbjct: 301 EMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSG 360

[Close]

BLAST of Carg11257-RA vs. TrEMBL
Match: tr|A0A1R3HJJ8|A0A1R3HJJ8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18861 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.8e-107
Identity = 202/246 (82.11%), Postives = 224/246 (91.06%), Query Frame = 0


Query: 22  TDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYL 81
           T ++ TDTY QAASNLVAGNNLEQTIQQLMDMGGGNWD+ETV RALRAAYNNPERAVDYL
Sbjct: 128 TANLPTDTYSQAASNLVAGNNLEQTIQQLMDMGGGNWDKETVTRALRAAYNNPERAVDYL 187

Query: 82  YSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS-AGGGGLGS 141
           YSGIPESAEVAVPV RF +G ATET A+  AP SGAPN++PLNMFPQE ++ A  GGLGS
Sbjct: 188 YSGIPESAEVAVPVARFSTGQATETGAAPAAPVSGAPNSSPLNMFPQETVAGAAAGGLGS 247

Query: 142 LEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNF 201
           L+FLRNN QFQALR+MV +NPQILQPMLQELGKQNPQLLRLIQ+HHAEFLQLINEP++  
Sbjct: 248 LDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHHAEFLQLINEPLEGS 307

Query: 202 EGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 261
           EG++F+QA+ +MPHAINVTP EQ AIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN
Sbjct: 308 EGDIFDQADQEMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 367

Query: 262 SGDFDD 267
           +GDF+D
Sbjct: 368 AGDFED 373

[Close]

BLAST of Carg11257-RA vs. TrEMBL
Match: tr|A0A1R3HAL9|A0A1R3HAL9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30171 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.8e-107
Identity = 202/246 (82.11%), Postives = 224/246 (91.06%), Query Frame = 0


Query: 22  TDSMQTDTYGQAASNLVAGNNLEQTIQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYL 81
           T ++ TDTY QAASNLVAGNNLEQTIQQLMDMGGGNWD+ETV RALRAAYNNPERAVDYL
Sbjct: 128 TANLPTDTYSQAASNLVAGNNLEQTIQQLMDMGGGNWDKETVTRALRAAYNNPERAVDYL 187

Query: 82  YSGIPESAEVAVPVGRFGSGPATETEASLPAPASGAPNTAPLNMFPQEALS-AGGGGLGS 141
           YSGIPESAEVAVPV RF +G ATET A+  AP SGAPN++PLNMFPQE ++ A  GGLGS
Sbjct: 188 YSGIPESAEVAVPVARFSTGQATETGAAPAAPVSGAPNSSPLNMFPQETVAGAAAGGLGS 247

Query: 142 LEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNF 201
           L+FLRNN QFQALR+MV +NPQILQPMLQELGKQNPQLLRLIQ+HHAEFLQLINEP++  
Sbjct: 248 LDFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHHAEFLQLINEPLEGS 307

Query: 202 EGEMFEQAEPDMPHAINVTPDEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 261
           EG++F+QA+ +MPHAINVTP EQ AIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN
Sbjct: 308 EGDIFDQADQEMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAANYLLEN 367

Query: 262 SGDFDD 267
           +GDF+D
Sbjct: 368 AGDFED 373

The following BLAST results are available for this feature:

BLAST of Carg11257-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983432.1	2.4e-140	100.00	ubiquitin receptor RAD23b-like [Cucurbita maxima]	[more]
XP_023528872.1	5.1e-138	100.00	ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934936.1	2.5e-137	100.00	ubiquitin receptor RAD23b-like [Cucurbita moschata]	[more]
XP_022998454.1	4.0e-127	92.66	ubiquitin receptor RAD23b-like [Cucurbita maxima]	[more]
XP_023525748.1	1.4e-124	92.52	ubiquitin receptor RAD23b-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg11257-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79650.4	2.4e-97	74.90	Rad23 UV excision repair protein family	[more]
AT1G16190.1	4.0e-89	66.02	Rad23 UV excision repair protein family	[more]
AT5G38470.1	2.3e-76	61.66	Rad23 UV excision repair protein family	[more]
AT3G02540.1	2.0e-72	59.68	Rad23 UV excision repair protein family	[more]
AT5G16090.1	5.6e-14	42.86	INVOLVED IN: nucleotide-excision repair	[more]

BLAST of Carg11257-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84L33\|RD23B_ARATH	4.7e-95	74.69	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3	[more]
sp\|Q84L32\|RD23A_ARATH	7.3e-88	66.02	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=...	[more]
sp\|Q84L30\|RD23D_ARATH	4.2e-75	61.66	Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2	[more]
sp\|Q84L31\|RD23C_ARATH	3.6e-71	59.68	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2	[more]
sp\|Q40742\|RAD23_ORYSJ	6.6e-65	53.23	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RA...	[more]

BLAST of Carg11257-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LF05\|A0A0A0LF05_CUCSA	4.7e-124	94.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710740 PE=4 SV=1	[more]
tr\|A0A1S3CI18\|A0A1S3CI18_CUCME	3.7e-121	93.44	ubiquitin receptor RAD23b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=...	[more]
tr\|A0A1S3CIK2\|A0A1S3CIK2_CUCME	3.7e-121	93.44	ubiquitin receptor RAD23b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501214 PE=...	[more]
tr\|A0A1R3HJJ8\|A0A1R3HJJ8_COCAP	1.8e-107	82.11	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18861 PE=4 ...	[more]
tr\|A0A1R3HAL9\|A0A1R3HAL9_9ROSI	1.8e-107	82.11	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30171 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003684	damaged DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289	nucleotide-excision repair

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR009060	UBA-like_sf
IPR036353	XPC-bd_sf
IPR015360	XPC-bd
IPR015940	UBA
IPR006636	STI1_HS-bd
IPR004806	Rad23

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11257	Carg11257	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11257-RA	Carg11257-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11257-RA.three_prime_UTR.1	Carg11257-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11257-RA.CDS.8	Carg11257-RA.CDS.8	CDS
Carg11257-RA.CDS.7	Carg11257-RA.CDS.7	CDS
Carg11257-RA.CDS.6	Carg11257-RA.CDS.6	CDS
Carg11257-RA.CDS.5	Carg11257-RA.CDS.5	CDS
Carg11257-RA.CDS.4	Carg11257-RA.CDS.4	CDS
Carg11257-RA.CDS.3	Carg11257-RA.CDS.3	CDS
Carg11257-RA.CDS.2	Carg11257-RA.CDS.2	CDS
Carg11257-RA.CDS.1	Carg11257-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11257-RA.exon.8	Carg11257-RA.exon.8	exon
Carg11257-RA.exon.7	Carg11257-RA.exon.7	exon
Carg11257-RA.exon.6	Carg11257-RA.exon.6	exon
Carg11257-RA.exon.5	Carg11257-RA.exon.5	exon
Carg11257-RA.exon.4	Carg11257-RA.exon.4	exon
Carg11257-RA.exon.3	Carg11257-RA.exon.3	exon
Carg11257-RA.exon.2	Carg11257-RA.exon.2	exon
Carg11257-RA.exon.1	Carg11257-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004806	UV excision repair protein Rad23	PRINTS	PR01839	RAD23PROTEIN	coord: 248..263 score: 62.78 coord: 216..232 score: 61.5 coord: 233..247 score: 65.76 coord: 167..189 score: 59.68
IPR004806	UV excision repair protein Rad23	TIGRFAM	TIGR00601	TIGR00601	coord: 10..265 e-value: 2.0E-88 score: 295.1
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 139..182 e-value: 3.3E-7 score: 40.0
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 222..259 e-value: 1.3E-7 score: 41.3 coord: 43..83 e-value: 7.7E-7 score: 38.7
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 222..257 e-value: 9.2E-12 score: 44.5 coord: 43..81 e-value: 9.8E-17 score: 60.4
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 219..260 score: 15.848
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 41..84 score: 13.366
None	No IPR available	GENE3D	G3DSA:1.10.8.10		coord: 213..262 e-value: 3.8E-24 score: 86.5
None	No IPR available	GENE3D	G3DSA:1.10.8.10		coord: 36..86 e-value: 1.5E-22 score: 81.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..121
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 10..265
None	No IPR available	PANTHER	PTHR10621:SF26	UBIQUITIN RECEPTOR RAD23B-RELATED	coord: 10..265
None	No IPR available	CDD	cd14379	UBA1_Rad23_plant	coord: 37..86 e-value: 1.84888E-31 score: 111.165
IPR015360	XPC-binding domain	PFAM	PF09280	XPC-binding	coord: 141..196 e-value: 1.7E-24 score: 85.2
IPR036353	XPC-binding domain superfamily	GENE3D	G3DSA:1.10.10.540		coord: 130..197 e-value: 4.6E-27 score: 95.3
IPR036353	XPC-binding domain superfamily	SUPERFAMILY	SSF101238	XPC-binding domain	coord: 137..203
IPR009060	UBA-like superfamily	SUPERFAMILY	SSF46934	UBA-like	coord: 40..91
IPR009060	UBA-like superfamily	SUPERFAMILY	SSF46934	UBA-like	coord: 204..264