Carg11057 (gene) Silver-seed gourd

Overview
NameCarg11057
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA polymerase sigma factor
LocationCucurbita_argyrosperma_scaffold_027 : 698777 .. 702911 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTGTGAGTGTTTTACTCTCTAATTCTCTCTTTTCCCATTTTAAATGGTTTTTGATGTTTTGGGTTTCTTATTTGCCTAGCTGGGCCAAAATGGCTCGTGTTTAGTTGGATTGTTTGAAATGTTGTCCTGAGATTCTTTGTTTTAGGTGGCCATTATGCGTGCTAGTATTTACAAATGGTGCTGGTTTTGATGTTTTTATTGTATCTGATATAGAATGAGACTTGAATTTCCCTTTTCAATTACTGTTGTGCTTGTTTAAGAGATAGAATGTTCCTCGTTCTATTGGAATACTGCGTTGTGTTACCTGCTATCGATATGTCATTTGGTAATCTCTGCTTAGCCATACGGTTCTGCTATCGATGTGCTATCGATATGTCGTGATAACTTCCATAAGCTCTCATGATTTTGCTTTTGGTTTCCTCAAAAATCCTCGTACCAATGGAGATAGCATTTCTTACTTATAAACCCAAGATCAACGCCTTAGTTAGCCAACGTGGGACTCCCTCCTAATAATCCTCAACATGATTGGCAATTATGTCTAATCGGTTTCAGAGAAAAATTCTAATAGAAATAACGAAAGAGCCTCTAAGAAAAATAAAGGATGGAAGTAGTTTTTTAAACCATTCATTCAACTAGTCCTTACTTTGCCCAAATGATCTTTTGTATGTAACCATAGTTGGATAGAATGTTAGCTAGGTGTAGCGCTGTCGGTTAGACGTCTAATGTAGTTGCACACAACGTATCAACAATGAGAAAAATGGGGATTCATACCGACTTTGGAACTCCAGAAGGCCGATCAAAGGCCTCTGTTCCCATCTTTAGGCTCCTTTGATGACCATTGATTGTTTTTGTTTTGAAAATTAAGCGTATAAACACTCTTTTCACTCGGGCAAAAAAGAAAGATGAAAACCGTTCTAAAGAAATTGTGAGAAAGCACACACAATTTTGGACAATAGAGCGGAAAATGAAATCGTTATCAAGCGGGACCTTAGTTACTTTTTTTCTTATCTATAGGTGTAAATGATTTCCCATTGTTTAAGTAATGGTGAAGAGAAGTCCCAAGCATAAGAAATTTGGTACTCCTTTTGTAGCAGATAAGGCTATAACTGAGTCGTTCATTTGGTTGAATGTTAGTGCGTATAGTGTCCATAGATTTTATTGAAAACTTTTCTCATAAAATTTTGAATCATGCAGTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGGTGCAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGTTTGGATCGAAAACCACATCGCACTTGAAAACGTTAACATCGACCTGCAAGTAAAAGTAAAAATAAATTCAGCTTTTCAGCACTCAACTTTACAGTCACTACTAAATCTGGATTAGAAACATTATGTCAAATAACTTTTGATCTGATCCTGCTTTTAAACAGAATGTAGTTGTTTCTATCCTCAAATTTGATTCATTTATCAACTACAATTGCTCTTTAGATAGTATTTTGGATTAATATCTGGATTTGTTGTTATTTTCCTCGTGTTGTGTTCGATTACCGACACTTGTTCCGACTATTTCTAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGTACTTTTTCATGGATGCACACGAACCAAAATGCTTATAAATGGAAACTGAAAATTCGAATGCCTTGTTTATTGCTCGTGTTGTGATGTAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGGTATGTTTCTTTCCACCTGAATTATAACAGGAGAGACAAAAATTTCCCAATGAACTAAAGATTTCATTGATGAATGGACAGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGTCTGTCGCCTTGCTTCTACTCGGATCTTCCTTCCTCTCCCATTGCAGTCTCAGCATGTTTTAACTAGTTGAATCTCATGCTCTTTTCCAGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGACCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGACCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Homology
[Close]
BLAST of Carg11057 vs. NCBI nr
Match: XP_023515004.1 (RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo])

HSP 1 Score: 961.1 bits (2483), Expect = 1.8e-276
Identity = 578/589 (98.13%), Postives = 578/589 (98.13%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPH LRTQ
Sbjct: 96  MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHGLRTQ 155

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLT   
Sbjct: 156 CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 215

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SNALHFKWDQFMESE
Sbjct: 216 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNALHFKWDQFMESE 275

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAES XXXXXXEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 276 RADIIGEPVGVNNRPVEGDALEPSTAESDXXXXXXEELELLEDEFSKSIAVRSIRQTERK 335

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 336 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 395

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 396 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 455

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 456 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 515

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 516 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 575

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 576 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 635

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 636 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]
BLAST of Carg11057 vs. NCBI nr
Match: XP_022964550.1 (RNA polymerase sigma factor sigB [Cucurbita moschata])

HSP 1 Score: 952.2 bits (2460), Expect = 8.2e-274
Identity = 566/589 (96.10%), Postives = 566/589 (96.10%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPA               TFLPTANSTYFK RDPHSLRTQ
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPA--STITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQ 157

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLT XX
Sbjct: 158 CILSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSXX 217

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE
Sbjct: 218 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 277

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAES XXXXXXEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 278 RADIIGEPVGVNNRPVEGDALEPSTAESDXXXXXXEELELLEDEFSKSIAVRSIRQTERK 337

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 338 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 397

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 398 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 457

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 458 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 517

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 518 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 577

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 578 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 637

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 638 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]
BLAST of Carg11057 vs. NCBI nr
Match: XP_023000238.1 (RNA polymerase sigma factor sigB [Cucurbita maxima])

HSP 1 Score: 939.5 bits (2427), Expect = 5.5e-270
Identity = 554/589 (94.06%), Postives = 555/589 (94.23%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAI              TFLPTANSTYFKVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAI--TITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLT XX
Sbjct: 61  CILSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SNALHFKWDQFMESE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKSNALHFKWDQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAES       EELELL+DEFSKSIAVRS RQTERK
Sbjct: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 584

[Close]
BLAST of Carg11057 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 857.8 bits (2215), Expect = 2.1e-245
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +F+PTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                                                         +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       +ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 579

[Close]
BLAST of Carg11057 vs. NCBI nr
Match: XP_004154029.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis sativus] >KGN46260.1 RNA polymerase sigma factor rpoD1 [Cucumis sativus])

HSP 1 Score: 854.0 bits (2205), Expect = 3.0e-244
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +FLPTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NYSHHHSFLPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                 XX                                      +ALHFKW QFMESE
Sbjct: 121 ASIAAAXXEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       EELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSV+S KSGSSSRKKRNS QEVDY+DPLRYLRATT+ S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL   NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA T ED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQY+M
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 579

[Close]
BLAST of Carg11057 vs. TAIR10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2)

HSP 1 Score: 595.1 bits (1533), Expect = 4.6e-170
Identity = 361/600 (60.17%), Postives = 431/600 (71.83%), Query Frame = 0 

Query: 2   SCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQC 61
           SCLLPQFKC P++FSI F+T                        S +F        + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSFCAPKH--------------NKGSVFF--------QPQC 62

Query: 62  ILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY-----------LVESSLA 121
            +S  SP   T   +  +V +L+LP FDT++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFK 181
            TLLT      XXXXXXXXXXXXXXXXXXXX                            K
Sbjct: 123 ETLLTSDEAVVXXXXXXXXXXXXXXXXXXXXATLFKNSNNTNLLTSSTADK------RSK 182

Query: 182 WDQFMESERADIIGEPVGVNNRPVEGDALEPSTAE----SXXXXXXXEELELLEDEFSKS 241
           WDQF E ERA I+G  + V++  +  D +  S +             EE+ELLE++ S S
Sbjct: 183 WDQFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVS 242

Query: 242 IAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA 301
           +AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Sbjct: 243 LAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSS 302

Query: 302 SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYG 361
           SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++G
Sbjct: 303 SKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG 362

Query: 362 TCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 421
           T CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 363 TLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 422

Query: 422 WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMK 481
           WWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMK
Sbjct: 423 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMK 482

Query: 482 RLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLN 541
           RL  VL++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL 
Sbjct: 483 RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLG 542

Query: 542 PRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
            RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Sbjct: 543 TREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of Carg11057 vs. TAIR10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F)

HSP 1 Score: 237.7 bits (605), Expect = 1.9e-62
Identity = 138/360 (38.33%), Postives = 210/360 (58.33%), Query Frame = 0 

Query: 225 KSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATT 284
           K   VRS RQ ER+A+  RA +             +S KK+   Q  D +D L+      
Sbjct: 184 KGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGP 243

Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
              +LLTA +E EL   IQ LLKLE++K +L  + G EPT  +WA A G++   L+  ++
Sbjct: 244 ETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIH 303

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
            G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TY
Sbjct: 304 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 363

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
           A+WWI+Q++RKS+   SRTIRLP ++     KV EARK         P+ EE+A   G+S
Sbjct: 364 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 423

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
            ++L  +L   + P S++Q    +Q+    E+  D    T    + KQ M+  +  +L+ 
Sbjct: 424 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 483

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L+P+ER+II+ R+G++ G+ ++L EIGE+ G+S+ER+RQ+E  A  +LK    +  L  Y
Sbjct: 484 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]
BLAST of Carg11057 vs. TAIR10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C)

HSP 1 Score: 201.1 bits (510), Expect = 1.9e-51
Identity = 122/376 (32.45%), Postives = 223/376 (59.31%), Query Frame = 0 

Query: 217 ELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKK---RNSGQEVD- 276
           EL++   ++ + V S R+ ++KARR         S V+ ++G  S      R +   +D 
Sbjct: 208 ELVDTTPNQQVFVSSRRKVKKKARR---------SSVTAENGDQSSLPIGLRTTWNNIDV 267

Query: 277 --YNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAA 336
                P +Y +     S+     +E E+S G++ +  +ER++ +L E  G   + + WAA
Sbjct: 268 PRVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAA 327

Query: 337 AAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGA 396
           AAG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GA
Sbjct: 328 AAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGA 387

Query: 397 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANG- 456
           E+FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L T++G 
Sbjct: 388 ERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGI 447

Query: 457 RLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLL 516
           +   DEEIA   G S+K++       K   S+++K G     K  E   D    + E+ +
Sbjct: 448 KYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAV 507

Query: 517 IKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAF 576
           ++Q  ++++  +L+ L PRE+Q++  RYG++D R K+L+EIG+++ VS+E IR+IE  A 
Sbjct: 508 MRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAM 567

Query: 577 RKLKNKKRTKHLQQYL 586
            KL+++   + L+ YL
Sbjct: 568 AKLRDQPNAEDLRYYL 569

[Close]
BLAST of Carg11057 vs. TAIR10
Match: AT5G13730.1 (sigma factor 4)

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 106/300 (35.33%), Postives = 173/300 (57.67%), Query Frame = 0 

Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
           S S  L+  +E++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
            +WWIKQA+ ++++ +SR ++LP  M E T KV EA   L     R P+ EEIA    L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
           +  +   +   ++P SL++    N  +   E++  P+    E+++ ++ MK E+E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L  RE +++   +G+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]
BLAST of Carg11057 vs. TAIR10
Match: AT1G64860.1 (sigma factor A)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-38
Identity = 118/358 (32.96%), Postives = 195/358 (54.47%), Query Frame = 0 

Query: 239 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 298
           AR+ R   K  T++  +K+ S      +SG++V       Y++   S   +L+  + + L
Sbjct: 159 ARQRRIGAKKKTNMTHVKAVSDV----SSGKQV-----RGYVKGVIS-EDVLSHVEVVRL 218

Query: 299 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 358
           S+ I+  L+L+  K  L +R G EP+  Q A +  +++  L+  L      ++K+  SN+
Sbjct: 219 SKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNV 278

Query: 359 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 418
           RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L 
Sbjct: 279 RLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALV 338

Query: 419 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 478
           D SRT+RLP H+ E    ++ A+ +L    G  P+ + IA +  +S K++          
Sbjct: 339 DNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKV 398

Query: 479 RSLEQKFGINQNLKPSEVISDPEAVTA---------EDLLIKQFMKQELEKVLD-SLNPR 538
            SL++    + N  P E      A T          +DL     +K+E+ K++  +L  R
Sbjct: 399 FSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGER 458

Query: 539 ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           E++IIR  YG+ D    T ++I + +G+SRER+RQ+ L A  KLK+  R + ++  ++
Sbjct: 459 EKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

[Close]
BLAST of Carg11057 vs. Swiss-Prot
Match: sp|O22056|SIGB_ARATH (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 595.1 bits (1533), Expect = 8.3e-169
Identity = 361/600 (60.17%), Postives = 431/600 (71.83%), Query Frame = 0 

Query: 2   SCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQC 61
           SCLLPQFKC P++FSI F+T                        S +F        + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSFCAPKH--------------NKGSVFF--------QPQC 62

Query: 62  ILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY-----------LVESSLA 121
            +S  SP   T   +  +V +L+LP FDT++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFK 181
            TLLT      XXXXXXXXXXXXXXXXXXXX                            K
Sbjct: 123 ETLLTSDEAVVXXXXXXXXXXXXXXXXXXXXATLFKNSNNTNLLTSSTADK------RSK 182

Query: 182 WDQFMESERADIIGEPVGVNNRPVEGDALEPSTAE----SXXXXXXXEELELLEDEFSKS 241
           WDQF E ERA I+G  + V++  +  D +  S +             EE+ELLE++ S S
Sbjct: 183 WDQFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVS 242

Query: 242 IAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA 301
           +AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Sbjct: 243 LAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSS 302

Query: 302 SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYG 361
           SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++G
Sbjct: 303 SKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG 362

Query: 362 TCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 421
           T CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 363 TLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 422

Query: 422 WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMK 481
           WWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMK
Sbjct: 423 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMK 482

Query: 482 RLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLN 541
           RL  VL++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL 
Sbjct: 483 RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLG 542

Query: 542 PRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
            RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Sbjct: 543 TREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of Carg11057 vs. Swiss-Prot
Match: sp|P26683|SIGA_NOSS1 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-73
Identity = 146/332 (43.98%), Postives = 221/332 (66.57%), Query Frame = 0 

Query: 256 KSGSSSRKKRNSGQEVDY--NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 315
           KSG +++ +R +  +  +   D +R         +LL A +E+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 316 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGM 375
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 376 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 435
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 436 TYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 495
             ++K+  K L    GR P +EEIA    +++++L  +  + + P SLE   G  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 496 SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM 555
            + I + +  T ED + K  ++++LEKVLDSL+PRER ++R RYG++DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 556 MGVSRERIRQIELCAFRKLKNKKRTKHLQQYL 586
             V+RERIRQIE  A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]
BLAST of Carg11057 vs. Swiss-Prot
Match: sp|P38023|SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-71
Identity = 141/311 (45.34%), Postives = 207/311 (66.56%), Query Frame = 0 

Query: 275 DPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGV 334
           D +R         +LL A +E+EL+  I DLL LER+++EL E+    P+ A+WAAA   
Sbjct: 89  DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148

Query: 335 NQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFD 394
                R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208

Query: 395 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPND 454
             KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L    GR P +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268

Query: 455 EEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFM 514
           EEIA    +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 328

Query: 515 KQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKN 574
           +++LE VL +L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++
Sbjct: 329 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 388

Query: 575 KKRTKHLQQYL 586
             R   L++Y+
Sbjct: 389 PNRNSILKEYI 398

[Close]
BLAST of Carg11057 vs. Swiss-Prot
Match: sp|P52322|SIGA_MICAE (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.9e-64
Identity = 140/366 (38.25%), Postives = 218/366 (59.56%), Query Frame = 0 

Query: 260 SSRKKRNSGQEVDY-NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEE---- 319
           +S ++R++ ++  Y  D +R         +LL A +E+EL+  I DLLKLER++E+    
Sbjct: 51  ASARRRDAARKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLY 110

Query: 320 ------------------LAERYGNEPTFA-----------------QWAAAAGVNQRTL 379
                             + E+   EP  +                 +W A +       
Sbjct: 111 SDAEWGKQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAF 170

Query: 380 RKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGF 439
           ++RL +G   K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230

Query: 440 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAV 499
           KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L     R P +EEIA 
Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIAT 290

Query: 500 AAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELE 559
              +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  ++++LE
Sbjct: 291 KMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLE 350

Query: 560 KVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTK 586
            VLD+L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++  R  
Sbjct: 351 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 410

[Close]
BLAST of Carg11057 vs. Swiss-Prot
Match: sp|Q9LD95|SIGF_ARATH (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.4e-61
Identity = 138/360 (38.33%), Postives = 210/360 (58.33%), Query Frame = 0 

Query: 225 KSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATT 284
           K   VRS RQ ER+A+  RA +             +S KK+   Q  D +D L+      
Sbjct: 184 KGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGP 243

Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
              +LLTA +E EL   IQ LLKLE++K +L  + G EPT  +WA A G++   L+  ++
Sbjct: 244 ETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIH 303

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
            G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TY
Sbjct: 304 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 363

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
           A+WWI+Q++RKS+   SRTIRLP ++     KV EARK         P+ EE+A   G+S
Sbjct: 364 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 423

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
            ++L  +L   + P S++Q    +Q+    E+  D    T    + KQ M+  +  +L+ 
Sbjct: 424 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 483

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L+P+ER+II+ R+G++ G+ ++L EIGE+ G+S+ER+RQ+E  A  +LK    +  L  Y
Sbjct: 484 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]
BLAST of Carg11057 vs. TrEMBL
Match: tr|A0A1S3CD00|A0A1S3CD00_CUCME (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 857.8 bits (2215), Expect = 1.4e-245
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +F+PTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                                                         +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       +ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 579

[Close]
BLAST of Carg11057 vs. TrEMBL
Match: tr|A0A0A0K917|A0A0A0K917_CUCSA (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 854.0 bits (2205), Expect = 2.0e-244
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +FLPTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NYSHHHSFLPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                 XX                                      +ALHFKW QFMESE
Sbjct: 121 ASIAAAXXEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       EELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSV+S KSGSSSRKKRNS QEVDY+DPLRYLRATT+ S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL   NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA T ED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQY+M
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 579

[Close]
BLAST of Carg11057 vs. TrEMBL
Match: tr|A0A1S3CBA5|A0A1S3CBA5_CUCME (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 814.3 bits (2102), Expect = 1.8e-232
Identity = 444/588 (75.51%), Postives = 470/588 (79.93%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +F+PTA S+Y            
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSY------------ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
                 SPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  -----TSPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                                                         +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       +ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 562

[Close]
BLAST of Carg11057 vs. TrEMBL
Match: tr|A0A2I4EE22|A0A2I4EE22_9ROSI (RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1)

HSP 1 Score: 681.8 bits (1758), Expect = 1.4e-192
Identity = 387/598 (64.72%), Postives = 454/598 (75.92%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHP+TFSIQF+T                 T     N    K RD   +R Q
Sbjct: 1   MSCLLPQFKCHPDTFSIQFRT----------HQHSVSTTHSHPQNE---KSRDRIDIRAQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL----------VESSLA 120
           CILS  S  TS G+    N+ +L+LP  +T++D  +  +  +Y+           E++LA
Sbjct: 61  CILSTTSFSTSIGSTAVLNMGKLRLPSLETDSDPFTTNKPWTYMGAVGPPTEAKFEATLA 120

Query: 121 S-TLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHF 180
           + TL+T    XXXXXXXXXXXXX                               ++ LHF
Sbjct: 121 TETLITSEEAXXXXXXXXXXXXXKAAVKFAKDAAMLVNNNHSEKADTRSSVSFEADVLHF 180

Query: 181 KWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAV 240
            W Q ++++RA I+G+P G     +E  +++ +T ES       +EL+L++++ SKS AV
Sbjct: 181 NWVQPVKTDRAAIVGDPRGPEAGLLENHSMQHATKESDDLEPTDKELDLVQEQLSKSPAV 240

Query: 241 RSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKL 300
           RS RQTERKA+R +A+EKAA +VVS+K GS+SRKKR S Q++DY+DPLRYLRATTS SKL
Sbjct: 241 RSRRQTERKAKRAKAAEKAAANVVSVKPGSTSRKKRVSLQDIDYSDPLRYLRATTSTSKL 300

Query: 301 LTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCC 360
           LT+++ELELSEGIQDLLKLE+L EELAER G++P FAQWAAAAGV+Q+TLRKRLNYGT C
Sbjct: 301 LTSTEELELSEGIQDLLKLEKLHEELAERCGSQPAFAQWAAAAGVDQKTLRKRLNYGTLC 360

Query: 361 KDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 420
           KDKMIKSNIRLVISIAKNYQG GMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI
Sbjct: 361 KDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 420

Query: 421 KQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLA 480
           KQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+D EIA A GLSMKRL 
Sbjct: 421 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDVEIAEATGLSMKRLT 480

Query: 481 TVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRE 540
            VL+TPKAPRSLEQK GINQNLKPSEVI+DP+A TAE+LL+KQFMKQ+LE VLDSLNPRE
Sbjct: 481 AVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEELLMKQFMKQDLENVLDSLNPRE 540

Query: 541 RQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           RQ+IRWR+GMEDGRMKTLQEIGE MGVSRERIRQIE CAFRKLKNKKRTKHLQQYL+P
Sbjct: 541 RQVIRWRFGMEDGRMKTLQEIGESMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLP 585

[Close]
BLAST of Carg11057 vs. TrEMBL
Match: tr|A0A2I4EE19|A0A2I4EE19_9ROSI (RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1)

HSP 1 Score: 681.4 bits (1757), Expect = 1.8e-192
Identity = 384/599 (64.11%), Postives = 451/599 (75.29%), Query Frame = 0 

Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHP+TFSIQF+T                 T     N    K RD   +R Q
Sbjct: 1   MSCLLPQFKCHPDTFSIQFRT----------HQHSVSTTHSHPQNE---KSRDRIDIRAQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL-----------VESSL 120
           CILS  S  TS G+    N+ +L+LP  +T++D  +  +  +Y+            E++L
Sbjct: 61  CILSTTSFSTSIGSTAVLNMGKLRLPSLETDSDPFTTNKPWTYMGAVGPPTEKAKFEATL 120

Query: 121 AS-TLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALH 180
           A+ TL+T     XXXXXXXXXX                                 ++ LH
Sbjct: 121 ATETLITSEEAVXXXXXXXXXXLAKAAVKFAKDAAMLVNNNHSEKADTRSSVSFEADVLH 180

Query: 181 FKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIA 240
           F W Q ++++RA I+G+P G     +E  +++ +T ES       +EL+L++++ SKS A
Sbjct: 181 FNWVQPVKTDRAAIVGDPRGPEAGLLENHSMQHATKESDDLEPTDKELDLVQEQLSKSPA 240

Query: 241 VRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASK 300
           VRS RQTERKA+R +A+EKAA +VVS+K GS+SRKKR S Q++DY+DPLRYLRATTS SK
Sbjct: 241 VRSRRQTERKAKRAKAAEKAAANVVSVKPGSTSRKKRVSLQDIDYSDPLRYLRATTSTSK 300

Query: 301 LLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTC 360
           LLT+++ELELSEGIQDLLKLE+L EELAER G++P FAQWAAAAGV+Q+TLRKRLNYGT 
Sbjct: 301 LLTSTEELELSEGIQDLLKLEKLHEELAERCGSQPAFAQWAAAAGVDQKTLRKRLNYGTL 360

Query: 361 CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 420
           CKDKMIKSNIRLVISIAKNYQG GMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 361 CKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 420

Query: 421 IKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRL 480
           IKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+D EIA A GLSMKRL
Sbjct: 421 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDVEIAEATGLSMKRL 480

Query: 481 ATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPR 540
             VL+TPKAPRSLEQK GINQNLKPSEVI+DP+A TAE+LL+KQFMKQ+LE VLDSLNPR
Sbjct: 481 TAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEELLMKQFMKQDLENVLDSLNPR 540

Query: 541 ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           ERQ+IRWR+GMEDGRMKTLQEIGE MGVSRERIRQIE CAFRKLKNKKRTKHLQQYL+P
Sbjct: 541 ERQVIRWRFGMEDGRMKTLQEIGESMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLP 586

The following BLAST results are available for this feature:
BLAST of Carg11057 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023515004.11.8e-27698.13RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo][more]
XP_022964550.18.2e-27496.10RNA polymerase sigma factor sigB [Cucurbita moschata][more]
XP_023000238.15.5e-27094.06RNA polymerase sigma factor sigB [Cucurbita maxima][more]
XP_008460092.12.1e-24578.40PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo][more]
XP_004154029.13.0e-24478.40PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis sativus] >KGN462... [more]
BLAST of Carg11057 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08540.14.6e-17060.17RNApolymerase sigma subunit 2[more]
AT2G36990.11.9e-6238.33RNApolymerase sigma-subunit F[more]
AT3G53920.11.9e-5132.45RNApolymerase sigma-subunit C[more]
AT5G13730.16.1e-4535.33sigma factor 4[more]
AT1G64860.11.4e-3832.96sigma factor A[more]
BLAST of Carg11057 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22056|SIGB_ARATH8.3e-16960.17RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV... [more]
sp|P26683|SIGA_NOSS11.0e-7343.98RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT... [more]
sp|P38023|SIGA1_SYNE72.1e-7145.34RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) O... [more]
sp|P52322|SIGA_MICAE1.9e-6438.25RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ... [more]
sp|Q9LD95|SIGF_ARATH3.4e-6138.33RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Carg11057 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CD00|A0A1S3CD00_CUCME1.4e-24578.40RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1[more]
tr|A0A0A0K917|A0A0A0K917_CUCSA2.0e-24478.40RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1[more]
tr|A0A1S3CBA5|A0A1S3CBA5_CUCME1.8e-23275.51RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1[more]
tr|A0A2I4EE22|A0A2I4EE22_9ROSI1.4e-19264.72RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1[more]
tr|A0A2I4EE19|A0A2I4EE19_9ROSI1.8e-19264.11RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2
IPR007624RNA_pol_sigma70_r3
IPR016262RNA_pol_sigma_SigB/C/D/F
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR000943RNA_pol_sigma70
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11057-RACarg11057-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 298..318
NoneNo IPR availableGENE3DG3DSA:1.10.601.10coord: 97..425
e-value: 3.6E-39
score: 137.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..272
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 114..587
NoneNo IPR availablePANTHERPTHR30603:SF25SUBFAMILY NOT NAMEDcoord: 114..587
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 515..573
e-value: 5.6856E-13
score: 63.6626
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 525..537
score: 42.68
coord: 401..409
score: 82.44
coord: 561..572
score: 58.33
coord: 377..390
score: 52.4
coord: 546..561
score: 54.84
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 546..572
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 351..575
e-value: 6.8E-33
score: 111.6
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 521..573
e-value: 8.1E-20
score: 70.0
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 353..423
e-value: 5.8E-18
score: 64.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3DG3DSA:1.10.10.10coord: 509..587
e-value: 2.6E-28
score: 99.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3DG3DSA:1.10.10.10coord: 426..501
e-value: 2.3E-12
score: 49.3
IPR016262RNA polymerase sigma factor, SigB/C/D/F, plastidPIRSFPIRSF000767Sigma_factor_SigCcoord: 1..587
e-value: 3.2E-185
score: 615.2
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 432..507
e-value: 1.6E-14
score: 53.6
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILYSSF88946Sigma2 domain of RNA polymerase sigma factorscoord: 274..423
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILYSSF88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 485..584
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILYSSF88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 421..472

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11057Cla006978Watermelon (97103) v1carwmB1078
Carg11057Csa6G078550Cucumber (Chinese Long) v2carcuB1095
Carg11057MELO3C022483Melon (DHL92) v3.5.1carmeB1044
Carg11057ClCG06G000590Watermelon (Charleston Gray)carwcgB1047
Carg11057CSPI06G06050Wild cucumber (PI 183967)carcpiB1117
Carg11057Cucsa.362600Cucumber (Gy14) v1carcgyB1194
Carg11057CmoCh08G009590Cucurbita moschata (Rifu)carcmoB1452
Carg11057Cp4.1LG17g02870Cucurbita pepo (Zucchini)carcpeB1503
Carg11057MELO3C022483.2Melon (DHL92) v3.6.1carmedB1058
Carg11057CsaV3_6G006360Cucumber (Chinese Long) v3carcucB1128
Carg11057Cla97C06G109830Watermelon (97103) v2carwmbB1134
Carg11057Bhi12G002268Wax gourdcarwgoB1266
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg11057Silver-seed gourdcarcarB267
Carg11057Silver-seed gourdcarcarB269
Carg11057Silver-seed gourdcarcarB550
Carg11057Silver-seed gourdcarcarB649
Carg11057Cucumber (Gy14) v2carcgybB1057
Carg11057Cucumber (Gy14) v2carcgybB1059
Carg11057Cucumber (Gy14) v2carcgybB1060
Carg11057Cucumber (Gy14) v1carcgyB1190
Carg11057Cucumber (Gy14) v1carcgyB1191
Carg11057Cucurbita maxima (Rimu)carcmaB1485
Carg11057Cucurbita maxima (Rimu)carcmaB1487
Carg11057Cucurbita maxima (Rimu)carcmaB1493
Carg11057Cucurbita maxima (Rimu)carcmaB1494
Carg11057Cucurbita maxima (Rimu)carcmaB1495
Carg11057Cucurbita moschata (Rifu)carcmoB1443
Carg11057Cucurbita moschata (Rifu)carcmoB1444
Carg11057Cucurbita moschata (Rifu)carcmoB1446
Carg11057Cucurbita moschata (Rifu)carcmoB1448
Carg11057Cucurbita moschata (Rifu)carcmoB1451
Carg11057Cucurbita pepo (Zucchini)carcpeB1499
Carg11057Cucurbita pepo (Zucchini)carcpeB1501
Carg11057Cucurbita pepo (Zucchini)carcpeB1504
Carg11057Cucurbita pepo (Zucchini)carcpeB1505
Carg11057Cucurbita pepo (Zucchini)carcpeB1507
Carg11057Wild cucumber (PI 183967)carcpiB1113
Carg11057Wild cucumber (PI 183967)carcpiB1115
Carg11057Cucumber (Chinese Long) v2carcuB1091
Carg11057Cucumber (Chinese Long) v2carcuB1093
Carg11057Cucumber (Chinese Long) v3carcucB1124
Carg11057Cucumber (Chinese Long) v3carcucB1126
Carg11057Bottle gourd (USVL1VR-Ls)carlsiB982
Carg11057Bottle gourd (USVL1VR-Ls)carlsiB983
Carg11057Bottle gourd (USVL1VR-Ls)carlsiB985
Carg11057Melon (DHL92) v3.5.1carmeB1049
Carg11057Melon (DHL92) v3.5.1carmeB1050
Carg11057Melon (DHL92) v3.6.1carmedB1064
Carg11057Watermelon (Charleston Gray)carwcgB1044
Carg11057Watermelon (Charleston Gray)carwcgB1045
Carg11057Watermelon (97103) v1carwmB1074
Carg11057Watermelon (97103) v1carwmB1075
Carg11057Watermelon (97103) v2carwmbB1130
Carg11057Watermelon (97103) v2carwmbB1131