ClCG06G000590 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G000590
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA polymerase sigma factor
Location	CG_Chr06 : 553509 .. 557857 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCTTCTTCTTCATCAATCAACTCAATTCCCCATCTCTGAAACCCTTCTTCAATCTTCATTTTTCAAGCTCCCAATGAAACCCTTTTCTTATGCACCACATTCCTGCCTCTTCCCCTTCTGGGTCTCCCACGGACTTCAATTTTGAATGCCTTCATTTATGTCCGCCATAGTTGCAGAGTAGCAGAAACCCATTTGGAGTACGAAGAAGAAGAACATCAACAGGGCGATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATTATTCTCCCCATCACAGCTTTCTTCCCACTGCCAATTCCAGTTACAGTGAGTGTTTTTCTCTCTCATTCTCTCTTTTTCGACCTTTTGTTTTGTACTGTTCAAATGGGGTTTTGGTGTTTTCCGTTGGTTAATTGTCAAGCTGGGATAAAATGGCTTGTGTGTAGTTGCTAAGTTCAGCCATATGTTCAAGTTTTTGAGTTGGATTGCTCGAATTTCTGTCCTGAGATTCTTTGTCTTAGATAGTCTAAGGATTTACAAATGTGGTTGTCGAGCATCTAAGTTCTGATTTACATTAAAGAATTTCCCAAATGGTCCTGATATCGATGTTGCTATTGTGTTTGATGATGATTGAAACTTAAATTTCCCTTTTCAAAGAATATTGTGTGAGTTTTAAGTGGCAGAATGTTCTTTGTATTGAAATACTAGGTTGTGGTATGGTGCCCAATGGAGTGATTGGGAAATATGTCCTATCCAATTTTCAGGGAAAAAAATTCTAGCAAAAAACAAAAAGAAACCCTAAGGCAAAATATTGATGGAAGTAGTTTACTAAACCAGTCATTCAATTAGTCTATACTTTACTTAAAGTATCATTGGTTTTGAGGTCAACAACATTTGATCTGTTGCTCGAAAGTATATATCTTAAACAGTGCAACATAACACCCAGATTACCATTAGTGATGTATATAACAGTAGTTGAACAGAATGTTAACAAGGTGTAGCTCTGTCAGTGACAGAGCAAGCAAATATAGTCACACACAAGGTATCCAACAATGCAGAAAAAAAGAGGATTCAGACCAACTTTGGAACTCCTGAAGACCAATCAAAGGCCTCCTTTCCTCTCTTTATTTAAACATTTCGTTGCCCGCTTCCACATCAGTTTTGAGTAGGTATTTCTTATCTACAATGGTAAGTAGAATGGAGAAGGAAAGTCTCAAGTAAATGAAATTTGGAACTATTTTTTGCTCTAGATGGTGATAGAGCAAGAAACGAGGTTTTCTGTGTCAATTTCTACTTTTATGTGAAAAACTCTTAAAACAACTGATTTCTCATTAGGGTTTCTGTCTGTATGATTATACTTTTAGCGGATGAAATTATATTGATGTCCATCTTTACCAAGGGACTGTTTAGATTGACTTTTTTAGTGCTTAAAAACATTTTTATTTTCTTTTAAAAACACCTTTTAAGCATTTAGAAGCTAATACAAATAGGCCCGAAGTCTATAACCAAGAAGTTCATTCATGGGGAATAGAGCCATAAATTTTTGTTGAAAATTTTTTCTGATACAATTTTGAATCATGCAGCTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCGGCATCACCATCAACATCTACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAGTTGCCTCCTTTTGATACTAACACTGACTCAGTCTCCGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGTTCTTCTGGCTAACAATAGCAACTCTTCCCGAGCAGGAACAAAATCTCAATCTTCTTCCAAACCTGATGCTTTACATTTCAAATGGGCTCAGTTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCTGTGGAAGGCGATGCTTTGCAAACCAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGCTACTACTAGTGTAGTGTCATTGAAATCCGGTTCTAGCAGCCGGAAGAAGCGTAATTCTATACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGTTCGATTGTCAGTCATTTAATTATTTCCTACAATCATGTCTTTCTAACAGGATCGAGACCATATTGCATTTAGAAACTTAACATTAACATTTAACTCAATTTTACAGTCGATACAAAATCTGGATTTGTTTGTTTGTAACCAAGAAACATTATTTCAAATAACTTTACAATCCATCTCAATTGGATAAAATTTTCAAGATAAATTAAGAATAGAATAGGTGAAGCAAATGAAGTGGATAATGGATACACTCAATCCATAAAAAATGAATTTCACTTTATCCTATTTTCTGTAAAACCTAGCAGTTCTCTTCAATTTCGGAGAAGATATGCAGACAAACCTCGGTGAAAGGGCCCACCCATGGCAGTATTATGTTCGTTAAAACTTCCAATAAGTTGTCTGATCCAGCTTCTTAATAGAATCTAATTGTAGTTTCGTTTCTTTAATTTGATTCTCTAATGGAATGCATAGATTAATGATATTGATCAACAACAATGGCTCGTTAGATGGTGATTCTGGGTTAATTTCAATATCCTGATTTATTCCTTATATTCCATGTTTTTTGTTTGGTTACTGCCTTATATTCCATGTTTTTTGTTTGGTTACTGACATTTGTTCCAAATATTTCCTAATCCAGGACCTACTGAAACTGGAGCGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGTACTTTTGCATTACTGCAGACCAGCCAAAATGCTTATGAATGGAAACTGAAATAATGAATATCTTGTTTTGGTTTCGAATGACTCATTGCTTGTGTTGTAACGTGCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAAAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCCCTTTCTGATCAGTCTCGGACTATTCGCTTGCCTGTATGTTTCTTTTTTCCAGCGTTTGTTTAGTAAAAAACGATAAATTGCTTTGTCAAATTCATTATAGAACTATACAAATGAGAAAAAAATATAGCCTATGAAAAGTCCCTTTGAACTTGTTAATTGAAGAGATTTCATTGCTCACACTTTGCCAATATCAACGTTGATGAAATGGCAGTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGTCCGTCTTATTGCCTACTCGGTTTCTTTTCCTCTTTTTTCTCATTGCAATATCACCATCTTTGACCTATTTGATTCTCATACTCTTTTCCAGGAAGTCATTTCTGACCCGGAAGCGGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTTGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGAGTCTCCATCAAGATTCAAGAGTTAGATTCTTCCAAAAGTATTTATTATCTGATATGAGGCTTAAAGAAGGCTTGTTCTTTCTTTCTTTCTTTCTTT

mRNA sequence

TCTTCTTCTTCTTCTTCATCAATCAACTCAATTCCCCATCTCTGAAACCCTTCTTCAATCTTCATTTTTCAAGCTCCCAATGAAACCCTTTTCTTATGCACCACATTCCTGCCTCTTCCCCTTCTGGGTCTCCCACGGACTTCAATTTTGAATGCCTTCATTTATGTCCGCCATAGTTGCAGAGTAGCAGAAACCCATTTGGAGTACGAAGAAGAAGAACATCAACAGGGCGATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATTATTCTCCCCATCACAGCTTTCTTCCCACTGCCAATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCGGCATCACCATCAACATCTACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAGTTGCCTCCTTTTGATACTAACACTGACTCAGTCTCCGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGTTCTTCTGGCTAACAATAGCAACTCTTCCCGAGCAGGAACAAAATCTCAATCTTCTTCCAAACCTGATGCTTTACATTTCAAATGGGCTCAGTTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCTGTGGAAGGCGATGCTTTGCAAACCAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGCTACTACTAGTGTAGTGTCATTGAAATCCGGTTCTAGCAGCCGGAAGAAGCGTAATTCTATACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACCTACTGAAACTGGAGCGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAAAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCCCTTTCTGATCAGTCTCGGACTATTCGCTTGCCTTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGAAGTCATTTCTGACCCGGAAGCGGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTTGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGAGTCTCCATCAAGATTCAAGAGTTAGATTCTTCCAAAAGTATTTATTATCTGATATGAGGCTTAAAGAAGGCTTGTTCTTTCTTTCTTTCTTTCTTT

Coding sequence (CDS)

ATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATTATTCTCCCCATCACAGCTTTCTTCCCACTGCCAATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCGGCATCACCATCAACATCTACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAGTTGCCTCCTTTTGATACTAACACTGACTCAGTCTCCGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGTTCTTCTGGCTAACAATAGCAACTCTTCCCGAGCAGGAACAAAATCTCAATCTTCTTCCAAACCTGATGCTTTACATTTCAAATGGGCTCAGTTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCTGTGGAAGGCGATGCTTTGCAAACCAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGCTACTACTAGTGTAGTGTCATTGAAATCCGGTTCTAGCAGCCGGAAGAAGCGTAATTCTATACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACCTACTGAAACTGGAGCGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAAAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCCCTTTCTGATCAGTCTCGGACTATTCGCTTGCCTTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGAAGTCATTTCTGACCCGGAAGCGGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTTGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPSTSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

Homology

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BLAST of ClCG06G000590 vs. Swiss-Prot
Match: SIGB_ARATH (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB PE=2 SV=2)

HSP 1 Score: 692.6 bits (1786), Expect = 3.7e-198
Identity = 379/593 (63.91%), Postives = 457/593 (77.07%), Query Frame = 1


Query: 2   SCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPST 61
           SCLLPQFKC P++FSI F+T+   +P H+            +     + QC +S  SP+ 
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSF-CAPKHN------------KGSVFFQPQCAVST-SPAL 62

Query: 62  STGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   +  +V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESER 181
            + AAAAEAV LA+AAVKVA+DA L  N++N     T   +SS  D    KW QF E ER
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNN-----TNLLTSSTADK-RSKWDQFTEKER 182

Query: 182 ADIIGEPVGVNNRPVEGDALQTSTTESD---DMEPTS-EELELLQDELSESITVRSKRQT 241
           A I+G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+ VRS RQT
Sbjct: 183 AGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQT 242

Query: 242 ERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATE 301
           ERKARR +  EKTA+  + S+K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  E
Sbjct: 243 ERKARRAKGLEKTAS-GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 302

Query: 302 ELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMI 361
           E ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMI
Sbjct: 303 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 362

Query: 362 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 421
           KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVR
Sbjct: 363 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 422

Query: 422 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT 481
           KSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++
Sbjct: 423 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 482

Query: 482 PKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIR 541
           PK PRSL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  RE+QVIR
Sbjct: 483 PKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIR 542

Query: 542 WRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           WRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 WRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

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BLAST of ClCG06G000590 vs. Swiss-Prot
Match: SIGA_NOSS1 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=sigA PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-80
Identity = 154/332 (46.39%), Postives = 223/332 (67.17%), Query Frame = 1


Query: 250 KSGSSSRKKRNSIQEVDY--SDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQE 309
           KSG +++ +R +  +  +   D +R         RLL A EE+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 310 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGM 369
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 370 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 429
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 430 TYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 489
             R+K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 490 SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI 549
            + I + + ET ED + K  +++DLEKVLDSL+PRER V+R R+G++DGRMKTL+EIG+I
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 550 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 580
             V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

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BLAST of ClCG06G000590 vs. Swiss-Prot
Match: SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) GN=sigA1 PE=3 SV=2)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-78
Identity = 163/386 (42.23%), Postives = 240/386 (62.18%), Query Frame = 1


Query: 206 SEELELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSL------------KSGS 265
           ++  ELL   L  + T ++KR + +KA  T A  + ATT   +             +   
Sbjct: 17  TQATELLDPALKPAET-KAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDED 76

Query: 266 SSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERY 325
           ++ K +  +++    D +R         RLL A EE+EL+  I DLL LER+++EL E+ 
Sbjct: 77  AAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQL 136

Query: 326 GNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 385
              P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+
Sbjct: 137 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 196

Query: 386 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 445
           QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+
Sbjct: 197 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 256

Query: 446 ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD 505
             K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ +  + I +
Sbjct: 257 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 316

Query: 506 PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRE 565
            + ET ED + K  +++DLE VL +L+PRER V+R R+G++DGRMKTL+EIG++  V+RE
Sbjct: 317 ADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRE 376

Query: 566 RIRQIESCAFRKLKNKKRTKHLQQYL 580
           RIRQIE+ A RKL++  R   L++Y+
Sbjct: 377 RIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of ClCG06G000590 vs. Swiss-Prot
Match: SIGF_ARATH (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-70
Identity = 143/357 (40.06%), Postives = 213/357 (59.66%), Query Frame = 1


Query: 222 VRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTS 281
           VRSKRQ ER+A+  RA +         +   +S++KK    Q  D  D L+       T 
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK--QGADNDDALQLFLWGPETK 247

Query: 282 RLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT 341
           +LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G 
Sbjct: 248 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGR 307

Query: 342 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 401
             ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+W
Sbjct: 308 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 367

Query: 402 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 461
           WI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++
Sbjct: 368 WIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEK 427

Query: 462 LAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNP 521
           L  +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P
Sbjct: 428 LDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSP 487

Query: 522 RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 579
           +ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 488 KERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of ClCG06G000590 vs. Swiss-Prot
Match: SIGA2_SYNE7 (RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942) GN=sigA2 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-59
Identity = 119/300 (39.67%), Postives = 192/300 (64.00%), Query Frame = 1


Query: 282 RLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT 341
           RLLTA EEL     +Q L+ L   Q EL +R G+EP+  +WAAA  +N   L +++  G 
Sbjct: 24  RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83

Query: 342 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 401
             K KMI++N+RLV+SIAK YQ   M   DL+QEG  GL RG EKFD SKG+KFSTYA+W
Sbjct: 84  RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143

Query: 402 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 461
           WI+QA+ ++++ QSRTIRLP H+ E   ++K+ +++L  + GR     E+AE   L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203

Query: 462 LAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNP 521
           +   +   + P SL+ K+G +Q+ +  E++ D E  +  D + ++ +++DL  ++  L P
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPSDYVEQESLRRDLRNLMAELTP 263

Query: 522 RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           +++ VI  R+G+++G   +L ++GE + +SRER+R++E  A   L  ++R++ L +Y  S
Sbjct: 264 QQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHL--RRRSRLLAEYAAS 320

[Close]

BLAST of ClCG06G000590 vs. TrEMBL
Match: A0A0A0K917_CUCSA (RNA polymerase sigma factor rpoD1 OS=Cucumis sativus GN=Csa_6G078550 PE=4 SV=1)

HSP 1 Score: 1073.2 bits (2774), Expect = 1.3e-310
Identity = 553/581 (95.18%), Postives = 564/581 (97.07%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAANYS HHSFLPTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQSS KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDDMEPTSEELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T T SV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLL
Sbjct: 241 TVT-SVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of ClCG06G000590 vs. TrEMBL
Match: A0A061EZ47_THECC (RNApolymerase sigma subunit 2 OS=Theobroma cacao GN=TCM_025741 PE=4 SV=1)

HSP 1 Score: 810.8 bits (2093), Expect = 1.0e-231
Identity = 436/621 (70.21%), Postives = 497/621 (80.03%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAAN-------------YSPHHSFLPTANSS--------- 60
           MSCLLPQFKC P+TFSIQF+T  +             +SP         +          
Sbjct: 1   MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 61  -YTKVRDPHSLRTQCILSAASPSTSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA 120
              K ++    RTQC+LS  S STST      +V++L+LP F+ + +SV+V+R  +Y+GA
Sbjct: 61  VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120

Query: 121 V----ESSLASTL-----LTSEEATIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAG 180
                E+SL +TL     LTS+EA IAAAAAEAV LA+AAVKVA+DA L+A N N ++  
Sbjct: 121 TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180

Query: 181 TKSQSSSKPDALHFKWAQFMESERADIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEE 240
            KS  S   D+   KWA F E+ERA IIG+     +   E D+ Q STTESD++EPT+EE
Sbjct: 181 MKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEE 240

Query: 241 LELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYS 300
           LE L+++LS SI VRS+RQTERKA+RTRAAEK A  +VVS+KSGS++RK+R ++Q+VDYS
Sbjct: 241 LEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAA-NVVSVKSGSTNRKRRGALQDVDYS 300

Query: 301 DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGV 360
           DPLRYLR TTSTSRLLTA EELELSEGIQDLLKLERLQEELAER G +PTFAQWAAAAGV
Sbjct: 301 DPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGV 360

Query: 361 NQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 420
           +Q+TLR RLNYG  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD
Sbjct: 361 DQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 420

Query: 421 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDD 480
           ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD+
Sbjct: 421 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDN 480

Query: 481 EEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPS--------EVISDPEAETAE 540
           EE+AEA GLSMKRL AVL+TPKAPRSL+QKIGINQNLKPS        EVI+DPEAETAE
Sbjct: 481 EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAE 540

Query: 541 DMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIES 582
           DMLIKQFM++DLEKVLDSL+ RERQVIRWRFGMEDGRMKTLQEIGE+MGVSRERIRQIES
Sbjct: 541 DMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 600

[Close]

BLAST of ClCG06G000590 vs. TrEMBL
Match: A0A067EDW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007404mg PE=4 SV=1)

HSP 1 Score: 802.7 bits (2072), Expect = 2.9e-229
Identity = 419/589 (71.14%), Postives = 488/589 (82.85%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKC P+TFSI F+T  N+  HHS  P+      K ++P   RT C+LS  SPS
Sbjct: 24  MSCLLPQFKCQPDTFSIHFRTLHNHQ-HHSSHPS------KSKEPICFRTHCVLSTTSPS 83

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEA 120
           TST   T  +V++L+LP  + ++++V+  R  +Y GAV         +SLA+  LTS+EA
Sbjct: 84  TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 143

Query: 121 TIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESER 180
            IAAA+AEAV LA+AAVKVA+DA L+ N+ NS++  +K   SS  D     WAQ  E ER
Sbjct: 144 VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERER 203

Query: 181 ADIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKA 240
           A IIG+ V V   P E  + Q    +S D+EPT EEL+LL++++S+SI VRS+RQTERKA
Sbjct: 204 ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 263

Query: 241 RRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELEL 300
           RRTRAAEK A  +V+S+KSGS+SR+KR S+QEVDYSDPLRYLRATTS+SRLLTA EE++L
Sbjct: 264 RRTRAAEKAAA-NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 323

Query: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360
           S GIQDLLKLE L+E L+ER G  PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNI
Sbjct: 324 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 383

Query: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 384 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 443

Query: 421 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAP 480
           DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP++EE+AEA GLSMKRL AVL++PKAP
Sbjct: 444 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 503

Query: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFG 540
           RSL+QKIGINQNLKPSEVI+DPEAETAED+LIK+FMK+DLEKVLD+LNPRERQV+RWRFG
Sbjct: 504 RSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 563

Query: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           +EDGRMKTLQEIGE+MGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 564 LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604

[Close]

BLAST of ClCG06G000590 vs. TrEMBL
Match: B9SDA3_RICCO (RNA polymerase sigma factor rpoD1, putative OS=Ricinus communis GN=RCOM_1515490 PE=4 SV=1)

HSP 1 Score: 800.4 bits (2066), Expect = 1.4e-228
Identity = 425/581 (73.15%), Postives = 485/581 (83.48%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKC P+TFSI F+  ANY  H S +  +    TK R+P   R QCILS  SPS
Sbjct: 2   MSCLLPQFKCQPDTFSIHFR--ANYF-HFSNVTQS----TKSREPIYYRAQCILSTTSPS 61

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TST      ++++L+LP F+  +DS++     +Y     +    TL+TS+EA IAAAAAE
Sbjct: 62  TSTAV---LDLEKLRLPSFEAPSDSIAPNSPWTYATFGSTLATETLITSDEAVIAAAAAE 121

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AV LA+AAVKVA+DA LL  N  S+   +K  S S  DA   +W QF E+ERA IIG+ V
Sbjct: 122 AVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDAS--RWPQFTETERARIIGDSV 181

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
                P E  ++Q+S  ESD +E T +ELELLQ +LSE I VRS+RQTERKARR RA EK
Sbjct: 182 ATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEK 241

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
            A+ SVVS+K GS+S+KKR S+QEVDYSDPLRYLR TTSTSRLLTA+EELELS  IQDLL
Sbjct: 242 AAS-SVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLL 301

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYG +PTFAQWAAAAGV+QRTLRKR+N+GT+CKDKMIKSNIRLVISIAK
Sbjct: 302 KLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAK 361

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 362 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 421

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQLYSENGRHPDDEE+AEAAGLSMKRL+AVL+TPKAPRSL+QKIG
Sbjct: 422 PFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIG 481

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           +N +LKPSEVI+DPEAETAE++L+KQFMKQDLEKVL++LNPRE QV+RWRFG+EDGRMKT
Sbjct: 482 MNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKT 541

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           LQEIGEIMGVSRERIRQIES AFRKLKNKKRTK L+QYL++
Sbjct: 542 LQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569

[Close]

BLAST of ClCG06G000590 vs. TrEMBL
Match: V4SRW9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030998mg PE=4 SV=1)

HSP 1 Score: 796.2 bits (2055), Expect = 2.7e-227
Identity = 415/589 (70.46%), Postives = 485/589 (82.34%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKC P+TFSI F+T  N+  HHS  P+      K ++P   RT C+LS  SPS
Sbjct: 24  MSCLLPQFKCQPDTFSIHFRTLHNHQ-HHSSHPS------KSKEPICFRTHCVLSTTSPS 83

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEA 120
           TST   T  +V++L+LP  + ++++V+  R  +Y GAV         +SLA+  LTS+EA
Sbjct: 84  TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 143

Query: 121 TIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESER 180
            IAAA+AEAV LA+AAVKVA+DA L+ N+ NS++  +K   S   D     WAQ  E ER
Sbjct: 144 VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTERER 203

Query: 181 ADIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKA 240
           A IIG+ V V   P E  + Q    +S D+EPT EEL+LL++++S+SI VRS+RQTERKA
Sbjct: 204 ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 263

Query: 241 RRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELEL 300
           RRTRAAEK A  +V+S+KSGS++R+KR S+QEVDYSDPLRYLRATTS+SRLLTA EE++L
Sbjct: 264 RRTRAAEKAAA-NVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 323

Query: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360
           S GIQDLLKLE L+E L+ER G  PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNI
Sbjct: 324 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 383

Query: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 384 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 443

Query: 421 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAP 480
           DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP++EE+A+A GLSMKRL AVL+ PKAP
Sbjct: 444 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAP 503

Query: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFG 540
           RSL+QK GINQNLKPSEVI+DPEAETAED+LIK+FMK+DLEKVLD+LNPRERQV+RWRFG
Sbjct: 504 RSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 563

Query: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           +EDGRMKTLQEIGE+MGVSRERIRQIES AFRKLKNKKRTKHL QY ++
Sbjct: 564 LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604

[Close]

BLAST of ClCG06G000590 vs. TAIR10
Match: AT1G08540.1 (AT1G08540.1 RNApolymerase sigma subunit 2)

HSP 1 Score: 692.6 bits (1786), Expect = 2.1e-199
Identity = 379/593 (63.91%), Postives = 457/593 (77.07%), Query Frame = 1


Query: 2   SCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPST 61
           SCLLPQFKC P++FSI F+T+   +P H+            +     + QC +S  SP+ 
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSF-CAPKHN------------KGSVFFQPQCAVST-SPAL 62

Query: 62  STGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   +  +V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESER 181
            + AAAAEAV LA+AAVKVA+DA L  N++N     T   +SS  D    KW QF E ER
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNN-----TNLLTSSTADK-RSKWDQFTEKER 182

Query: 182 ADIIGEPVGVNNRPVEGDALQTSTTESD---DMEPTS-EELELLQDELSESITVRSKRQT 241
           A I+G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+ VRS RQT
Sbjct: 183 AGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQT 242

Query: 242 ERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATE 301
           ERKARR +  EKTA+  + S+K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  E
Sbjct: 243 ERKARRAKGLEKTAS-GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 302

Query: 302 ELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMI 361
           E ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMI
Sbjct: 303 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 362

Query: 362 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 421
           KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVR
Sbjct: 363 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 422

Query: 422 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMT 481
           KSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++
Sbjct: 423 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 482

Query: 482 PKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIR 541
           PK PRSL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  RE+QVIR
Sbjct: 483 PKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIR 542

Query: 542 WRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           WRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 WRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of ClCG06G000590 vs. TAIR10
Match: AT2G36990.1 (AT2G36990.1 RNApolymerase sigma-subunit F)

HSP 1 Score: 266.9 bits (681), Expect = 2.9e-71
Identity = 143/357 (40.06%), Postives = 213/357 (59.66%), Query Frame = 1


Query: 222 VRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTS 281
           VRSKRQ ER+A+  RA +         +   +S++KK    Q  D  D L+       T 
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK--QGADNDDALQLFLWGPETK 247

Query: 282 RLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT 341
           +LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G 
Sbjct: 248 QLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGR 307

Query: 342 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 401
             ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+W
Sbjct: 308 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 367

Query: 402 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 461
           WI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++
Sbjct: 368 WIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEK 427

Query: 462 LAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNP 521
           L  +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P
Sbjct: 428 LDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSP 487

Query: 522 RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 579
           +ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 488 KERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of ClCG06G000590 vs. TAIR10
Match: AT3G53920.1 (AT3G53920.1 RNApolymerase sigma-subunit C)

HSP 1 Score: 229.9 bits (585), Expect = 3.9e-60
Identity = 124/375 (33.07%), Postives = 224/375 (59.73%), Query Frame = 1


Query: 206 SEELELLQDELSESITVRSKRQTERKARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEV 265
           S+  EL+    ++ + V S+R+ ++KARR+    +    S + +      R   N+I   
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPI----GLRTTWNNIDVP 263

Query: 266 DYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAA 325
               P +Y +     SR      E E+S G++ +  +ER++ +L E  G   + + WAAA
Sbjct: 264 RVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAA 323

Query: 326 AGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 385
           AG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE
Sbjct: 324 AGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAE 383

Query: 386 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-R 445
           +FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L + +G +
Sbjct: 384 RFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIK 443

Query: 446 HPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI 505
           +  DEEIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ E+ ++
Sbjct: 444 YAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVM 503

Query: 506 KQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFR 565
           +Q  ++D+  +L+ L PRE+QV+  R+G++D R K+L+EIG+++ VS+E IR+IE  A  
Sbjct: 504 RQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMA 563

Query: 566 KLKNKKRTKHLQQYL 580
           KL+++   + L+ YL
Sbjct: 564 KLRDQPNAEDLRYYL 569

[Close]

BLAST of ClCG06G000590 vs. TAIR10
Match: AT5G13730.1 (AT5G13730.1 sigma factor 4)

HSP 1 Score: 194.5 bits (493), Expect = 1.8e-49
Identity = 110/303 (36.30%), Postives = 173/303 (57.10%), Query Frame = 1


Query: 279 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 338
           S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 339 YGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 398
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 399 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 458
            +WWIKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EEIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 459 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDS 518
           +  +   +   ++P SL++    N  +   E++  P+    E+M+ ++ MK ++E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 519 LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 578
           L  RE +V+   FG+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 417

Query: 579 LMS 582
             S
Sbjct: 418 YSS 417

[Close]

BLAST of ClCG06G000590 vs. TAIR10
Match: AT1G64860.1 (AT1G64860.1 sigma factor A)

HSP 1 Score: 176.0 bits (445), Expect = 6.6e-44
Identity = 117/360 (32.50%), Postives = 194/360 (53.89%), Query Frame = 1


Query: 231 KARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEEL 290
           + RR  A +KT  T V ++   SS ++ R  ++ V   D L ++             E +
Sbjct: 160 RQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISEDVLSHV-------------EVV 219

Query: 291 ELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKS 350
            LS+ I+  L+L+  +  L +R G EP+  Q A +  +++  L+  L    L ++K+  S
Sbjct: 220 RLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMS 279

Query: 351 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 410
           N+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++
Sbjct: 280 NVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRA 339

Query: 411 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPK 470
           L D SRT+RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S K++        
Sbjct: 340 LVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVS 399

Query: 471 APRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLN 530
              SL++    + N  P E     I+D   E       +D+     +K+++ K++  +L 
Sbjct: 400 KVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLG 459

Query: 531 PRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 581
            RE+++IR  +G+ D    T ++I + +G+SRER+RQ+   A  KLK+  R + ++  ++
Sbjct: 460 EREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

[Close]

BLAST of ClCG06G000590 vs. NCBI nr
Match: gi|449473951|ref|XP_004154029.1| (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis sativus])

HSP 1 Score: 1073.2 bits (2774), Expect = 1.8e-310
Identity = 553/581 (95.18%), Postives = 564/581 (97.07%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAANYS HHSFLPTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQSS KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDDMEPTSEELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T T SV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLL
Sbjct: 241 TVT-SVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of ClCG06G000590 vs. NCBI nr
Match: gi|659120246|ref|XP_008460092.1| (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 1072.4 bits (2772), Expect = 2.7e-310
Identity = 554/581 (95.35%), Postives = 564/581 (97.07%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSF+PTA SSYTKVRDPHSLRTQCILSAASP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T T SVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 TVT-SVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of ClCG06G000590 vs. NCBI nr
Match: gi|778711267|ref|XP_011656706.1| (PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis sativus])

HSP 1 Score: 1028.9 bits (2659), Expect = 3.5e-297
Identity = 536/581 (92.25%), Postives = 547/581 (94.15%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAANYS HHSFLPTA SSYT                 SP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQSS KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDDMEPTSEELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T T SV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLL
Sbjct: 241 TVT-SVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 563

[Close]

BLAST of ClCG06G000590 vs. NCBI nr
Match: gi|659120248|ref|XP_008460093.1| (PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo])

HSP 1 Score: 1028.1 bits (2657), Expect = 6.0e-297
Identity = 537/581 (92.43%), Postives = 547/581 (94.15%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKCHPETFSIQFKTAAN S HHSF+PTA SSYT                 SP 
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDA LLANN NSSRAGTKSQ S KPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+ STTESDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           T T SVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Sbjct: 241 TVT-SVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of ClCG06G000590 vs. NCBI nr
Match: gi|1009110341|ref|XP_015895073.1| (PREDICTED: RNA polymerase sigma factor sigB [Ziziphus jujuba])

HSP 1 Score: 832.4 bits (2149), Expect = 4.8e-238
Identity = 437/590 (74.07%), Postives = 498/590 (84.41%), Query Frame = 1


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSPHHSFLPTANSSYTKVRDPHSLRTQCILSAASPS 60
           MSCLLPQFKC P+TFSI F+T          LP       K RD  S    CILS +SPS
Sbjct: 1   MSCLLPQFKCQPDTFSIHFRT---------HLP-------KPRDSISSWPHCILSTSSPS 60

Query: 61  TSTGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAV--------ESSLAS-TLLTSEE 120
           TS  T T  N+++L+LP  D N+DSV+  R  +Y GA+        E++LA+ TLLTSEE
Sbjct: 61  TSMATTTVLNLEKLRLPSLDANSDSVTANRPWTYTGAIGPPAKANLEATLATETLLTSEE 120

Query: 121 ATIAAAAAEAVTLAKAAVKVARDAVLLANNSNSSRAGTKSQSSSKPDALHFKWAQFMESE 180
           A IAAAAAEAVTLAKAAVKVA+DA LL NN+  +RA + S  S + DALH KW Q M++ 
Sbjct: 121 AVIAAAAAEAVTLAKAAVKVAKDATLLINNNPCTRAESTSLFSPEDDALHLKWPQHMKTG 180

Query: 181 RADIIGEPVGVNNRPVEGDALQTSTTESDDMEPTSEELELLQDELSESITVRSKRQTERK 240
           +   +G+ +G     ++  ++Q +  E+DD+EPT EELELLQ +LS  I VRS+RQTERK
Sbjct: 181 QPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHEELELLQSQLSNGIAVRSRRQTERK 240

Query: 241 ARRTRAAEKTATTSVVSLKSGSSSRKKRNSIQEVDYSDPLRYLRATTSTSRLLTATEELE 300
           ARRTRAAEK A T VVS+KSGS+ RKKR S+Q++D+SDPLRYLRATTSTSRLLTATEE+E
Sbjct: 241 ARRTRAAEKAAAT-VVSVKSGSTVRKKRASLQDIDHSDPLRYLRATTSTSRLLTATEEIE 300

Query: 301 LSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSN 360
           LSEGIQDLLKLE+LQEEL ER G++PTFAQWAAAAGV+Q+TLR+R+NYG LCKDKMIKSN
Sbjct: 301 LSEGIQDLLKLEKLQEELTERCGSQPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSN 360

Query: 361 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 420
           IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL
Sbjct: 361 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 420

Query: 421 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKA 480
           SDQSRTIRLPFHMVEATYRVKEARKQLYS+NGRHPDDEE+AEA GLSMKRLAAVL+TPKA
Sbjct: 421 SDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEVAEATGLSMKRLAAVLLTPKA 480

Query: 481 PRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRF 540
           PRSLEQKIGINQNLKPSEVI+DP+AET+ED+LI++FMKQDL+KVLDSLNPRE+QVIRWRF
Sbjct: 481 PRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQDLDKVLDSLNPREKQVIRWRF 540

Query: 541 GMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 582
           GMEDGRMKTLQEIGE+MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 541 GMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLVS 573

The following BLAST results are available for this feature:

BLAST of ClCG06G000590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIGB_ARATH	3.7e-198	63.91	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB PE=2 SV=2	[more]
SIGA_NOSS1	2.4e-80	46.39	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...	[more]
SIGA1_SYNE7	1.3e-78	42.23	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) G...	[more]
SIGF_ARATH	5.1e-70	40.06	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF ...	[more]
SIGA2_SYNE7	2.4e-59	39.67	RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942) G...	[more]

BLAST of ClCG06G000590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K917_CUCSA	1.3e-310	95.18	RNA polymerase sigma factor rpoD1 OS=Cucumis sativus GN=Csa_6G078550 PE=4 SV=1	[more]
A0A061EZ47_THECC	1.0e-231	70.21	RNApolymerase sigma subunit 2 OS=Theobroma cacao GN=TCM_025741 PE=4 SV=1	[more]
A0A067EDW2_CITSI	2.9e-229	71.14	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007404mg PE=4 SV=1	[more]
B9SDA3_RICCO	1.4e-228	73.15	RNA polymerase sigma factor rpoD1, putative OS=Ricinus communis GN=RCOM_1515490 ...	[more]
V4SRW9_9ROSI	2.7e-227	70.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030998mg PE=4 SV=1	[more]

BLAST of ClCG06G000590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08540.1	2.1e-199	63.91	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	2.9e-71	40.06	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	3.9e-60	33.07	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	1.8e-49	36.30	sigma factor 4	[more]
AT1G64860.1	6.6e-44	32.50	sigma factor A	[more]

BLAST of ClCG06G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449473951\|ref\|XP_004154029.1\|	1.8e-310	95.18	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis sativus]	[more]
gi\|659120246\|ref\|XP_008460092.1\|	2.7e-310	95.35	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
gi\|778711267\|ref\|XP_011656706.1\|	3.5e-297	92.25	PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis sativus]	[more]
gi\|659120248\|ref\|XP_008460093.1\|	6.0e-297	92.43	PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]	[more]
gi\|1009110341\|ref\|XP_015895073.1\|	4.8e-238	74.07	PREDICTED: RNA polymerase sigma factor sigB [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000943	RNA_pol_sigma70
IPR007624	RNA_pol_sigma70_r3
IPR007627	RNA_pol_sigma70_r2
IPR007630	RNA_pol_sigma70_r4
IPR009042	RNA_pol_sigma70_r1_2
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR013324	RNA_pol_sigma_r3/r4-like
IPR013325	RNA_pol_sigma_r2
IPR014284	RNA_pol_sigma-70_dom
IPR016262	RNA_pol_sigma_SigB/C/D/F

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding
GO:0016987	sigma factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0044281	small molecule metabolic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0019682	glyceraldehyde-3-phosphate metabolic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0001053	plastid sigma factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G000590.1	ClCG06G000590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 555..566 score: 5.2E-23coord: 519..531 score: 5.2E-23coord: 540..555 score: 5.2E-23coord: 371..384 score: 5.2E-23coord: 395..403 score: 5.2
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 540..566 scor
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 426..502 score: 3.2
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 347..417 score: 3.5
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 515..567 score: 1.1
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 269..301 score: 1.
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 510..579 score: 9.0E-28coord: 417..463 score: 1.1
IPR013324	RNA polymerase sigma factor, region 3/4	unknown	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 479..578 score: 5.23E-25coord: 415..466 score: 6.54
IPR013325	RNA polymerase sigma factor, region 2	unknown	SSF88946	Sigma2 domain of RNA polymerase sigma factors	coord: 268..417 score: 8.16
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAMs	TIGR02937	TIGR02937	coord: 345..569 score: 4.7
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIR	PIRSF000767	Sigma_factor_SigC	coord: 1..581 score: 1.7E
None	No IPR available	GENE3D	G3DSA:1.10.601.10		coord: 199..301 score: 4.6E-39coord: 339..416 score: 4.6
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 98..579 score: 1.6E
None	No IPR available	PANTHER	PTHR30603:SF25	SUBFAMILY NOT NAMED	coord: 98..579 score: 1.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G000590	Csa6G078550	Cucumber (Chinese Long) v2	cuwcgB476
ClCG06G000590	MELO3C022483	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G000590	Cla006978	Watermelon (97103) v1	wcgwmB345
ClCG06G000590	Cla97C06G109830	Watermelon (97103) v2	wcgwmbB273
ClCG06G000590	Bhi12G002268	Wax gourd	wcgwgoB502
ClCG06G000590	CSPI06G06050	Wild cucumber (PI 183967)	cpiwcgB503
ClCG06G000590	Cucsa.362600	Cucumber (Gy14) v1	cgywcgB620
ClCG06G000590	CmoCh08G009590	Cucurbita moschata (Rifu)	cmowcgB801
ClCG06G000590	Cp4.1LG17g02870	Cucurbita pepo (Zucchini)	cpewcgB295
ClCG06G000590	MELO3C022483.2	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G000590	Carg11057	Silver-seed gourd	carwcgB1047
ClCG06G000590	CsaV3_6G006360	Cucumber (Chinese Long) v3	cucwcgB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G000590	Watermelon (97103) v2	wcgwmbB264
ClCG06G000590	Watermelon (Charleston Gray)	wcgwcgB156
ClCG06G000590	Cucumber (Gy14) v1	cgywcgB454
ClCG06G000590	Cucurbita maxima (Rimu)	cmawcgB238
ClCG06G000590	Cucurbita maxima (Rimu)	cmawcgB323
ClCG06G000590	Cucurbita maxima (Rimu)	cmawcgB744
ClCG06G000590	Cucurbita maxima (Rimu)	cmawcgB801
ClCG06G000590	Cucurbita maxima (Rimu)	cmawcgB806
ClCG06G000590	Cucurbita moschata (Rifu)	cmowcgB225
ClCG06G000590	Cucurbita moschata (Rifu)	cmowcgB319
ClCG06G000590	Cucurbita moschata (Rifu)	cmowcgB745
ClCG06G000590	Cucurbita moschata (Rifu)	cmowcgB796
ClCG06G000590	Wild cucumber (PI 183967)	cpiwcgB250
ClCG06G000590	Cucumber (Chinese Long) v2	cuwcgB242
ClCG06G000590	Melon (DHL92) v3.5.1	mewcgB438
ClCG06G000590	Watermelon (97103) v1	wcgwmB327
ClCG06G000590	Cucurbita pepo (Zucchini)	cpewcgB141
ClCG06G000590	Cucurbita pepo (Zucchini)	cpewcgB300
ClCG06G000590	Cucurbita pepo (Zucchini)	cpewcgB565
ClCG06G000590	Cucurbita pepo (Zucchini)	cpewcgB790
ClCG06G000590	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G000590	Bottle gourd (USVL1VR-Ls)	lsiwcgB346
ClCG06G000590	Cucumber (Gy14) v2	cgybwcgB226
ClCG06G000590	Cucumber (Gy14) v2	cgybwcgB438
ClCG06G000590	Melon (DHL92) v3.6.1	medwcgB435
ClCG06G000590	Silver-seed gourd	carwcgB0223
ClCG06G000590	Silver-seed gourd	carwcgB0603
ClCG06G000590	Silver-seed gourd	carwcgB0937
ClCG06G000590	Silver-seed gourd	carwcgB1048
ClCG06G000590	Cucumber (Chinese Long) v3	cucwcgB250