Carg11057-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11057-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA polymerase sigma factor
Location	Cucurbita_argyrosperma_scaffold_027 : 698777 .. 702911 (-)
Sequence length	2368

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTGTGAGTGTTTTACTCTCTAATTCTCTCTTTTCCCATTTTAAATGGTTTTTGATGTTTTGGGTTTCTTATTTGCCTAGCTGGGCCAAAATGGCTCGTGTTTAGTTGGATTGTTTGAAATGTTGTCCTGAGATTCTTTGTTTTAGGTGGCCATTATGCGTGCTAGTATTTACAAATGGTGCTGGTTTTGATGTTTTTATTGTATCTGATATAGAATGAGACTTGAATTTCCCTTTTCAATTACTGTTGTGCTTGTTTAAGAGATAGAATGTTCCTCGTTCTATTGGAATACTGCGTTGTGTTACCTGCTATCGATATGTCATTTGGTAATCTCTGCTTAGCCATACGGTTCTGCTATCGATGTGCTATCGATATGTCGTGATAACTTCCATAAGCTCTCATGATTTTGCTTTTGGTTTCCTCAAAAATCCTCGTACCAATGGAGATAGCATTTCTTACTTATAAACCCAAGATCAACGCCTTAGTTAGCCAACGTGGGACTCCCTCCTAATAATCCTCAACATGATTGGCAATTATGTCTAATCGGTTTCAGAGAAAAATTCTAATAGAAATAACGAAAGAGCCTCTAAGAAAAATAAAGGATGGAAGTAGTTTTTTAAACCATTCATTCAACTAGTCCTTACTTTGCCCAAATGATCTTTTGTATGTAACCATAGTTGGATAGAATGTTAGCTAGGTGTAGCGCTGTCGGTTAGACGTCTAATGTAGTTGCACACAACGTATCAACAATGAGAAAAATGGGGATTCATACCGACTTTGGAACTCCAGAAGGCCGATCAAAGGCCTCTGTTCCCATCTTTAGGCTCCTTTGATGACCATTGATTGTTTTTGTTTTGAAAATTAAGCGTATAAACACTCTTTTCACTCGGGCAAAAAAGAAAGATGAAAACCGTTCTAAAGAAATTGTGAGAAAGCACACACAATTTTGGACAATAGAGCGGAAAATGAAATCGTTATCAAGCGGGACCTTAGTTACTTTTTTTCTTATCTATAGGTGTAAATGATTTCCCATTGTTTAAGTAATGGTGAAGAGAAGTCCCAAGCATAAGAAATTTGGTACTCCTTTTGTAGCAGATAAGGCTATAACTGAGTCGTTCATTTGGTTGAATGTTAGTGCGTATAGTGTCCATAGATTTTATTGAAAACTTTTCTCATAAAATTTTGAATCATGCAGTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGGTGCAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGTTTGGATCGAAAACCACATCGCACTTGAAAACGTTAACATCGACCTGCAAGTAAAAGTAAAAATAAATTCAGCTTTTCAGCACTCAACTTTACAGTCACTACTAAATCTGGATTAGAAACATTATGTCAAATAACTTTTGATCTGATCCTGCTTTTAAACAGAATGTAGTTGTTTCTATCCTCAAATTTGATTCATTTATCAACTACAATTGCTCTTTAGATAGTATTTTGGATTAATATCTGGATTTGTTGTTATTTTCCTCGTGTTGTGTTCGATTACCGACACTTGTTCCGACTATTTCTAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGTACTTTTTCATGGATGCACACGAACCAAAATGCTTATAAATGGAAACTGAAAATTCGAATGCCTTGTTTATTGCTCGTGTTGTGATGTAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGGTATGTTTCTTTCCACCTGAATTATAACAGGAGAGACAAAAATTTCCCAATGAACTAAAGATTTCATTGATGAATGGACAGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGTCTGTCGCCTTGCTTCTACTCGGATCTTCCTTCCTCTCCCATTGCAGTCTCAGCATGTTTTAACTAGTTGAATCTCATGCTCTTTTCCAGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGACCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGACCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

Homology

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BLAST of Carg11057-RA vs. NCBI nr
Match: XP_023515004.1 (RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo])

HSP 1 Score: 961.1 bits (2483), Expect = 1.8e-276
Identity = 578/589 (98.13%), Postives = 578/589 (98.13%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPH LRTQ
Sbjct: 96  MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHGLRTQ 155

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLT   
Sbjct: 156 CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 215

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SNALHFKWDQFMESE
Sbjct: 216 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNALHFKWDQFMESE 275

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAES XXXXXXEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 276 RADIIGEPVGVNNRPVEGDALEPSTAESDXXXXXXEELELLEDEFSKSIAVRSIRQTERK 335

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 336 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 395

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 396 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 455

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 456 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 515

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 516 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 575

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 576 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 635

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 636 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]

BLAST of Carg11057-RA vs. NCBI nr
Match: XP_022964550.1 (RNA polymerase sigma factor sigB [Cucurbita moschata])

HSP 1 Score: 952.2 bits (2460), Expect = 8.2e-274
Identity = 566/589 (96.10%), Postives = 566/589 (96.10%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPA               TFLPTANSTYFK RDPHSLRTQ
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPA--STITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQ 157

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLT XX
Sbjct: 158 CILSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSXX 217

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE
Sbjct: 218 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 277

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAES XXXXXXEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 278 RADIIGEPVGVNNRPVEGDALEPSTAESDXXXXXXEELELLEDEFSKSIAVRSIRQTERK 337

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 338 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 397

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 398 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 457

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 458 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 517

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 518 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 577

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 578 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 637

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 638 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]

BLAST of Carg11057-RA vs. NCBI nr
Match: XP_023000238.1 (RNA polymerase sigma factor sigB [Cucurbita maxima])

HSP 1 Score: 939.5 bits (2427), Expect = 5.5e-270
Identity = 554/589 (94.06%), Postives = 555/589 (94.23%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAI              TFLPTANSTYFKVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAI--TITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLT XX
Sbjct: 61  CILSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SNALHFKWDQFMESE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKSNALHFKWDQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAES       EELELL+DEFSKSIAVRS RQTERK
Sbjct: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 584

[Close]

BLAST of Carg11057-RA vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 857.8 bits (2215), Expect = 2.1e-245
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +F+PTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                                                         +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       +ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 579

[Close]

BLAST of Carg11057-RA vs. NCBI nr
Match: XP_004154029.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis sativus] >KGN46260.1 RNA polymerase sigma factor rpoD1 [Cucumis sativus])

HSP 1 Score: 854.0 bits (2205), Expect = 3.0e-244
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +FLPTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NYSHHHSFLPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                 XX                                      +ALHFKW QFMESE
Sbjct: 121 ASIAAAXXEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       EELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSV+S KSGSSSRKKRNS QEVDY+DPLRYLRATT+ S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL   NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA T ED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQY+M
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 579

[Close]

BLAST of Carg11057-RA vs. TAIR10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2)

HSP 1 Score: 595.1 bits (1533), Expect = 4.6e-170
Identity = 361/600 (60.17%), Postives = 431/600 (71.83%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQC 61
           SCLLPQFKC P++FSI F+T                        S +F        + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSFCAPKH--------------NKGSVFF--------QPQC 62

Query: 62  ILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY-----------LVESSLA 121
            +S  SP   T   +  +V +L+LP FDT++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFK 181
            TLLT      XXXXXXXXXXXXXXXXXXXX                            K
Sbjct: 123 ETLLTSDEAVVXXXXXXXXXXXXXXXXXXXXATLFKNSNNTNLLTSSTADK------RSK 182

Query: 182 WDQFMESERADIIGEPVGVNNRPVEGDALEPSTAE----SXXXXXXXEELELLEDEFSKS 241
           WDQF E ERA I+G  + V++  +  D +  S +             EE+ELLE++ S S
Sbjct: 183 WDQFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVS 242

Query: 242 IAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA 301
           +AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Sbjct: 243 LAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSS 302

Query: 302 SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYG 361
           SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++G
Sbjct: 303 SKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG 362

Query: 362 TCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 421
           T CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 363 TLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 422

Query: 422 WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMK 481
           WWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMK
Sbjct: 423 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMK 482

Query: 482 RLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLN 541
           RL  VL++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL 
Sbjct: 483 RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLG 542

Query: 542 PRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
            RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Sbjct: 543 TREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Carg11057-RA vs. TAIR10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F)

HSP 1 Score: 237.7 bits (605), Expect = 1.9e-62
Identity = 138/360 (38.33%), Postives = 210/360 (58.33%), Query Frame = 0


Query: 225 KSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATT 284
           K   VRS RQ ER+A+  RA +             +S KK+   Q  D +D L+      
Sbjct: 184 KGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGP 243

Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
              +LLTA +E EL   IQ LLKLE++K +L  + G EPT  +WA A G++   L+  ++
Sbjct: 244 ETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIH 303

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
            G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TY
Sbjct: 304 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 363

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
           A+WWI+Q++RKS+   SRTIRLP ++     KV EARK         P+ EE+A   G+S
Sbjct: 364 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 423

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
            ++L  +L   + P S++Q    +Q+    E+  D    T    + KQ M+  +  +L+ 
Sbjct: 424 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 483

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L+P+ER+II+ R+G++ G+ ++L EIGE+ G+S+ER+RQ+E  A  +LK    +  L  Y
Sbjct: 484 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of Carg11057-RA vs. TAIR10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C)

HSP 1 Score: 201.1 bits (510), Expect = 1.9e-51
Identity = 122/376 (32.45%), Postives = 223/376 (59.31%), Query Frame = 0


Query: 217 ELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKK---RNSGQEVD- 276
           EL++   ++ + V S R+ ++KARR         S V+ ++G  S      R +   +D 
Sbjct: 208 ELVDTTPNQQVFVSSRRKVKKKARR---------SSVTAENGDQSSLPIGLRTTWNNIDV 267

Query: 277 --YNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAA 336
                P +Y +     S+     +E E+S G++ +  +ER++ +L E  G   + + WAA
Sbjct: 268 PRVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAA 327

Query: 337 AAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGA 396
           AAG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GA
Sbjct: 328 AAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGA 387

Query: 397 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANG- 456
           E+FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L T++G 
Sbjct: 388 ERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGI 447

Query: 457 RLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLL 516
           +   DEEIA   G S+K++       K   S+++K G     K  E   D    + E+ +
Sbjct: 448 KYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAV 507

Query: 517 IKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAF 576
           ++Q  ++++  +L+ L PRE+Q++  RYG++D R K+L+EIG+++ VS+E IR+IE  A 
Sbjct: 508 MRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAM 567

Query: 577 RKLKNKKRTKHLQQYL 586
            KL+++   + L+ YL
Sbjct: 568 AKLRDQPNAEDLRYYL 569

[Close]

BLAST of Carg11057-RA vs. TAIR10
Match: AT5G13730.1 (sigma factor 4)

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 106/300 (35.33%), Postives = 173/300 (57.67%), Query Frame = 0


Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
           S S  L+  +E++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
            +WWIKQA+ ++++ +SR ++LP  M E T KV EA   L     R P+ EEIA    L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
           +  +   +   ++P SL++    N  +   E++  P+    E+++ ++ MK E+E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L  RE +++   +G+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of Carg11057-RA vs. TAIR10
Match: AT1G64860.1 (sigma factor A)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-38
Identity = 118/358 (32.96%), Postives = 195/358 (54.47%), Query Frame = 0


Query: 239 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 298
           AR+ R   K  T++  +K+ S      +SG++V       Y++   S   +L+  + + L
Sbjct: 159 ARQRRIGAKKKTNMTHVKAVSDV----SSGKQV-----RGYVKGVIS-EDVLSHVEVVRL 218

Query: 299 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 358
           S+ I+  L+L+  K  L +R G EP+  Q A +  +++  L+  L      ++K+  SN+
Sbjct: 219 SKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNV 278

Query: 359 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 418
           RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L 
Sbjct: 279 RLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALV 338

Query: 419 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 478
           D SRT+RLP H+ E    ++ A+ +L    G  P+ + IA +  +S K++          
Sbjct: 339 DNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKV 398

Query: 479 RSLEQKFGINQNLKPSEVISDPEAVTA---------EDLLIKQFMKQELEKVLD-SLNPR 538
            SL++    + N  P E      A T          +DL     +K+E+ K++  +L  R
Sbjct: 399 FSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGER 458

Query: 539 ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           E++IIR  YG+ D    T ++I + +G+SRER+RQ+ L A  KLK+  R + ++  ++
Sbjct: 459 EKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

[Close]

BLAST of Carg11057-RA vs. Swiss-Prot
Match: sp|O22056|SIGB_ARATH (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 595.1 bits (1533), Expect = 8.3e-169
Identity = 361/600 (60.17%), Postives = 431/600 (71.83%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQC 61
           SCLLPQFKC P++FSI F+T                        S +F        + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSFCAPKH--------------NKGSVFF--------QPQC 62

Query: 62  ILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY-----------LVESSLA 121
            +S  SP   T   +  +V +L+LP FDT++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFK 181
            TLLT      XXXXXXXXXXXXXXXXXXXX                            K
Sbjct: 123 ETLLTSDEAVVXXXXXXXXXXXXXXXXXXXXATLFKNSNNTNLLTSSTADK------RSK 182

Query: 182 WDQFMESERADIIGEPVGVNNRPVEGDALEPSTAE----SXXXXXXXEELELLEDEFSKS 241
           WDQF E ERA I+G  + V++  +  D +  S +             EE+ELLE++ S S
Sbjct: 183 WDQFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVS 242

Query: 242 IAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA 301
           +AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Sbjct: 243 LAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSS 302

Query: 302 SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYG 361
           SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++G
Sbjct: 303 SKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG 362

Query: 362 TCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 421
           T CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 363 TLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 422

Query: 422 WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMK 481
           WWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMK
Sbjct: 423 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMK 482

Query: 482 RLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLN 541
           RL  VL++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL 
Sbjct: 483 RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLG 542

Query: 542 PRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
            RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Sbjct: 543 TREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Carg11057-RA vs. Swiss-Prot
Match: sp|P26683|SIGA_NOSS1 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-73
Identity = 146/332 (43.98%), Postives = 221/332 (66.57%), Query Frame = 0


Query: 256 KSGSSSRKKRNSGQEVDY--NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 315
           KSG +++ +R +  +  +   D +R         +LL A +E+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 316 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGM 375
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 376 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 435
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 436 TYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 495
             ++K+  K L    GR P +EEIA    +++++L  +  + + P SLE   G  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 496 SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM 555
            + I + +  T ED + K  ++++LEKVLDSL+PRER ++R RYG++DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 556 MGVSRERIRQIELCAFRKLKNKKRTKHLQQYL 586
             V+RERIRQIE  A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of Carg11057-RA vs. Swiss-Prot
Match: sp|P38023|SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-71
Identity = 141/311 (45.34%), Postives = 207/311 (66.56%), Query Frame = 0


Query: 275 DPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGV 334
           D +R         +LL A +E+EL+  I DLL LER+++EL E+    P+ A+WAAA   
Sbjct: 89  DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148

Query: 335 NQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFD 394
                R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208

Query: 395 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPND 454
             KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L    GR P +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268

Query: 455 EEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFM 514
           EEIA    +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  +
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLL 328

Query: 515 KQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKN 574
           +++LE VL +L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++
Sbjct: 329 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRH 388

Query: 575 KKRTKHLQQYL 586
             R   L++Y+
Sbjct: 389 PNRNSILKEYI 398

[Close]

BLAST of Carg11057-RA vs. Swiss-Prot
Match: sp|P52322|SIGA_MICAE (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.9e-64
Identity = 140/366 (38.25%), Postives = 218/366 (59.56%), Query Frame = 0


Query: 260 SSRKKRNSGQEVDY-NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEE---- 319
           +S ++R++ ++  Y  D +R         +LL A +E+EL+  I DLLKLER++E+    
Sbjct: 51  ASARRRDAARKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLY 110

Query: 320 ------------------LAERYGNEPTFA-----------------QWAAAAGVNQRTL 379
                             + E+   EP  +                 +W A +       
Sbjct: 111 SDAEWGKQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAF 170

Query: 380 RKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGF 439
           ++RL +G   K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230

Query: 440 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAV 499
           KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L     R P +EEIA 
Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIAT 290

Query: 500 AAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELE 559
              +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  ++++LE
Sbjct: 291 KMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLE 350

Query: 560 KVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTK 586
            VLD+L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++  R  
Sbjct: 351 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 410

[Close]

BLAST of Carg11057-RA vs. Swiss-Prot
Match: sp|Q9LD95|SIGF_ARATH (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.4e-61
Identity = 138/360 (38.33%), Postives = 210/360 (58.33%), Query Frame = 0


Query: 225 KSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATT 284
           K   VRS RQ ER+A+  RA +             +S KK+   Q  D +D L+      
Sbjct: 184 KGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGP 243

Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
              +LLTA +E EL   IQ LLKLE++K +L  + G EPT  +WA A G++   L+  ++
Sbjct: 244 ETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIH 303

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
            G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TY
Sbjct: 304 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 363

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
           A+WWI+Q++RKS+   SRTIRLP ++     KV EARK         P+ EE+A   G+S
Sbjct: 364 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 423

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
            ++L  +L   + P S++Q    +Q+    E+  D    T    + KQ M+  +  +L+ 
Sbjct: 424 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 483

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L+P+ER+II+ R+G++ G+ ++L EIGE+ G+S+ER+RQ+E  A  +LK    +  L  Y
Sbjct: 484 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of Carg11057-RA vs. TrEMBL
Match: tr|A0A1S3CD00|A0A1S3CD00_CUCME (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 857.8 bits (2215), Expect = 1.4e-245
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +F+PTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                                                         +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       +ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 579

[Close]

BLAST of Carg11057-RA vs. TrEMBL
Match: tr|A0A0A0K917|A0A0A0K917_CUCSA (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 854.0 bits (2205), Expect = 2.0e-244
Identity = 461/588 (78.40%), Postives = 487/588 (82.82%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +FLPTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NYSHHHSFLPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
           CILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  CILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                 XX                                      +ALHFKW QFMESE
Sbjct: 121 ASIAAAXXEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       EELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSV+S KSGSSSRKKRNS QEVDY+DPLRYLRATT+ S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL   NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA T ED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQY+M
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 579

[Close]

BLAST of Carg11057-RA vs. TrEMBL
Match: tr|A0A1S3CBA5|A0A1S3CBA5_CUCME (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 814.3 bits (2102), Expect = 1.8e-232
Identity = 444/588 (75.51%), Postives = 470/588 (79.93%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A               +F+PTA S+Y            
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSY------------ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTXXX 120
                 SPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLT   
Sbjct: 61  -----TSPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHFKWDQFMESE 180
                                                         +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ES       +ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 562

[Close]

BLAST of Carg11057-RA vs. TrEMBL
Match: tr|A0A2I4EE22|A0A2I4EE22_9ROSI (RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1)

HSP 1 Score: 681.8 bits (1758), Expect = 1.4e-192
Identity = 387/598 (64.72%), Postives = 454/598 (75.92%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHP+TFSIQF+T                 T     N    K RD   +R Q
Sbjct: 1   MSCLLPQFKCHPDTFSIQFRT----------HQHSVSTTHSHPQNE---KSRDRIDIRAQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL----------VESSLA 120
           CILS  S  TS G+    N+ +L+LP  +T++D  +  +  +Y+           E++LA
Sbjct: 61  CILSTTSFSTSIGSTAVLNMGKLRLPSLETDSDPFTTNKPWTYMGAVGPPTEAKFEATLA 120

Query: 121 S-TLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALHF 180
           + TL+T    XXXXXXXXXXXXX                               ++ LHF
Sbjct: 121 TETLITSEEAXXXXXXXXXXXXXKAAVKFAKDAAMLVNNNHSEKADTRSSVSFEADVLHF 180

Query: 181 KWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIAV 240
            W Q ++++RA I+G+P G     +E  +++ +T ES       +EL+L++++ SKS AV
Sbjct: 181 NWVQPVKTDRAAIVGDPRGPEAGLLENHSMQHATKESDDLEPTDKELDLVQEQLSKSPAV 240

Query: 241 RSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKL 300
           RS RQTERKA+R +A+EKAA +VVS+K GS+SRKKR S Q++DY+DPLRYLRATTS SKL
Sbjct: 241 RSRRQTERKAKRAKAAEKAAANVVSVKPGSTSRKKRVSLQDIDYSDPLRYLRATTSTSKL 300

Query: 301 LTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCC 360
           LT+++ELELSEGIQDLLKLE+L EELAER G++P FAQWAAAAGV+Q+TLRKRLNYGT C
Sbjct: 301 LTSTEELELSEGIQDLLKLEKLHEELAERCGSQPAFAQWAAAAGVDQKTLRKRLNYGTLC 360

Query: 361 KDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 420
           KDKMIKSNIRLVISIAKNYQG GMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI
Sbjct: 361 KDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 420

Query: 421 KQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLA 480
           KQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+D EIA A GLSMKRL 
Sbjct: 421 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDVEIAEATGLSMKRLT 480

Query: 481 TVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRE 540
            VL+TPKAPRSLEQK GINQNLKPSEVI+DP+A TAE+LL+KQFMKQ+LE VLDSLNPRE
Sbjct: 481 AVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEELLMKQFMKQDLENVLDSLNPRE 540

Query: 541 RQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           RQ+IRWR+GMEDGRMKTLQEIGE MGVSRERIRQIE CAFRKLKNKKRTKHLQQYL+P
Sbjct: 541 RQVIRWRFGMEDGRMKTLQEIGESMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLP 585

[Close]

BLAST of Carg11057-RA vs. TrEMBL
Match: tr|A0A2I4EE19|A0A2I4EE19_9ROSI (RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1)

HSP 1 Score: 681.4 bits (1757), Expect = 1.8e-192
Identity = 384/599 (64.11%), Postives = 451/599 (75.29%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAIXXXXXXXXXXXXXXTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHP+TFSIQF+T                 T     N    K RD   +R Q
Sbjct: 1   MSCLLPQFKCHPDTFSIQFRT----------HQHSVSTTHSHPQNE---KSRDRIDIRAQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL-----------VESSL 120
           CILS  S  TS G+    N+ +L+LP  +T++D  +  +  +Y+            E++L
Sbjct: 61  CILSTTSFSTSIGSTAVLNMGKLRLPSLETDSDPFTTNKPWTYMGAVGPPTEKAKFEATL 120

Query: 121 AS-TLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNALH 180
           A+ TL+T     XXXXXXXXXX                                 ++ LH
Sbjct: 121 ATETLITSEEAVXXXXXXXXXXLAKAAVKFAKDAAMLVNNNHSEKADTRSSVSFEADVLH 180

Query: 181 FKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESXXXXXXXEELELLEDEFSKSIA 240
           F W Q ++++RA I+G+P G     +E  +++ +T ES       +EL+L++++ SKS A
Sbjct: 181 FNWVQPVKTDRAAIVGDPRGPEAGLLENHSMQHATKESDDLEPTDKELDLVQEQLSKSPA 240

Query: 241 VRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASK 300
           VRS RQTERKA+R +A+EKAA +VVS+K GS+SRKKR S Q++DY+DPLRYLRATTS SK
Sbjct: 241 VRSRRQTERKAKRAKAAEKAAANVVSVKPGSTSRKKRVSLQDIDYSDPLRYLRATTSTSK 300

Query: 301 LLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTC 360
           LLT+++ELELSEGIQDLLKLE+L EELAER G++P FAQWAAAAGV+Q+TLRKRLNYGT 
Sbjct: 301 LLTSTEELELSEGIQDLLKLEKLHEELAERCGSQPAFAQWAAAAGVDQKTLRKRLNYGTL 360

Query: 361 CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 420
           CKDKMIKSNIRLVISIAKNYQG GMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW
Sbjct: 361 CKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 420

Query: 421 IKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRL 480
           IKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+D EIA A GLSMKRL
Sbjct: 421 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDVEIAEATGLSMKRL 480

Query: 481 ATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPR 540
             VL+TPKAPRSLEQK GINQNLKPSEVI+DP+A TAE+LL+KQFMKQ+LE VLDSLNPR
Sbjct: 481 TAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEELLMKQFMKQDLENVLDSLNPR 540

Query: 541 ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           ERQ+IRWR+GMEDGRMKTLQEIGE MGVSRERIRQIE CAFRKLKNKKRTKHLQQYL+P
Sbjct: 541 ERQVIRWRFGMEDGRMKTLQEIGESMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLP 586

The following BLAST results are available for this feature:

BLAST of Carg11057-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515004.1	1.8e-276	98.13	RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo]	[more]
XP_022964550.1	8.2e-274	96.10	RNA polymerase sigma factor sigB [Cucurbita moschata]	[more]
XP_023000238.1	5.5e-270	94.06	RNA polymerase sigma factor sigB [Cucurbita maxima]	[more]
XP_008460092.1	2.1e-245	78.40	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
XP_004154029.1	3.0e-244	78.40	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis sativus] >KGN462...	[more]

BLAST of Carg11057-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08540.1	4.6e-170	60.17	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.9e-62	38.33	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	1.9e-51	32.45	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	6.1e-45	35.33	sigma factor 4	[more]
AT1G64860.1	1.4e-38	32.96	sigma factor A	[more]

BLAST of Carg11057-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22056\|SIGB_ARATH	8.3e-169	60.17	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
sp\|P26683\|SIGA_NOSS1	1.0e-73	43.98	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
sp\|P38023\|SIGA1_SYNE7	2.1e-71	45.34	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942) O...	[more]
sp\|P52322\|SIGA_MICAE	1.9e-64	38.25	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
sp\|Q9LD95\|SIGF_ARATH	3.4e-61	38.33	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg11057-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CD00\|A0A1S3CD00_CUCME	1.4e-245	78.40	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
tr\|A0A0A0K917\|A0A0A0K917_CUCSA	2.0e-244	78.40	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
tr\|A0A1S3CBA5\|A0A1S3CBA5_CUCME	1.8e-232	75.51	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
tr\|A0A2I4EE22\|A0A2I4EE22_9ROSI	1.4e-192	64.72	RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1	[more]
tr\|A0A2I4EE19\|A0A2I4EE19_9ROSI	1.8e-192	64.11	RNA polymerase sigma factor OS=Juglans regia OX=51240 GN=LOC108988751 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR013324	RNA_pol_sigma_r3/r4-like
IPR013325	RNA_pol_sigma_r2
IPR007624	RNA_pol_sigma70_r3
IPR016262	RNA_pol_sigma_SigB/C/D/F
IPR036388	WH-like_DNA-bd_sf
IPR007627	RNA_pol_sigma70_r2
IPR007630	RNA_pol_sigma70_r4
IPR014284	RNA_pol_sigma-70_dom
IPR000943	RNA_pol_sigma70

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11057	Carg11057	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11057-RA	Carg11057-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11057-RA.three_prime_UTR.1	Carg11057-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11057-RA.CDS.7	Carg11057-RA.CDS.7	CDS
Carg11057-RA.CDS.6	Carg11057-RA.CDS.6	CDS
Carg11057-RA.CDS.5	Carg11057-RA.CDS.5	CDS
Carg11057-RA.CDS.4	Carg11057-RA.CDS.4	CDS
Carg11057-RA.CDS.3	Carg11057-RA.CDS.3	CDS
Carg11057-RA.CDS.2	Carg11057-RA.CDS.2	CDS
Carg11057-RA.CDS.1	Carg11057-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11057-RA.five_prime_UTR.1	Carg11057-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11057-RA.exon.7	Carg11057-RA.exon.7	exon
Carg11057-RA.exon.6	Carg11057-RA.exon.6	exon
Carg11057-RA.exon.5	Carg11057-RA.exon.5	exon
Carg11057-RA.exon.4	Carg11057-RA.exon.4	exon
Carg11057-RA.exon.3	Carg11057-RA.exon.3	exon
Carg11057-RA.exon.2	Carg11057-RA.exon.2	exon
Carg11057-RA.exon.1	Carg11057-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 298..318
None	No IPR available	GENE3D	G3DSA:1.10.601.10		coord: 97..425 e-value: 3.6E-39 score: 137.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..272
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 114..587
None	No IPR available	PANTHER	PTHR30603:SF25	SUBFAMILY NOT NAMED	coord: 114..587
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 515..573 e-value: 5.6856E-13 score: 63.6626
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 525..537 score: 42.68 coord: 401..409 score: 82.44 coord: 561..572 score: 58.33 coord: 377..390 score: 52.4 coord: 546..561 score: 54.84
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 546..572
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 351..575 e-value: 6.8E-33 score: 111.6
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 521..573 e-value: 8.1E-20 score: 70.0
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 353..423 e-value: 5.8E-18 score: 64.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 509..587 e-value: 2.6E-28 score: 99.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 426..501 e-value: 2.3E-12 score: 49.3
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 1..587 e-value: 3.2E-185 score: 615.2
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 432..507 e-value: 1.6E-14 score: 53.6
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	coord: 274..423
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 485..584
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 421..472