Carg11004 (gene) Silver-seed gourd

NameCarg11004
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsmall acidic protein 1
LocationCucurbita_argyrosperma_scaffold_027 : 334134 .. 335469 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCGTGATTGTGAGGGCTCGATATATCTATCCCTTTGCTTCTCCAGTTCGGCACAAAGACGAAGCAAGAAAAATAAGAGCGAAACAGAACTCAGAAATAAAAGCTGGGCGGCTCGAAGCGTGATTGTGAAGGCTCGATCAGGTAAGAATCTTGATTGATTACAATTTCTTTGCCTCTACATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTCGATTTTGTTGTAATTCGCTTCGTTTTTCTTGTTTCTTGTTGTTCGCTTCGATTGTTGTAAGCTTCGCCTGATTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCGTTCAAAATTCTATTCCGGTGAGTTGCTAATCAAAAGATGTCCATGTTTCATTAATGAAATCTTCTTTGATCTTGATCATTTTCCAGTCGTTCATTATATAGAAGCCTAAAAGAGATCGAATGGTTGTTTCGCTTTTTATTTTGATTTTGTGAAGTTCCGAAGAAACATATTGGTTTTGTTATTGATGATTGCAGCAGCGAGAGGAGAAATGAGGCCTACACCGATGGAGTTCTTTGCGGAGATGGAAGAACAGGGATCGACAGTAGCGATGGACGTGGATGATGTTGATCCACTTGAGATATTAGGCGAGGGCGTGATCTCAGCCGAGAACAAGCTCGCCGATGCCGATTTCTTCAACTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGAAATTCATTTCCCTGGTTCCATTCGAAACAAGTAGTCAGTTTACTAATCGTATGTTTATTGCTTCTGTTGATGAAACAAGATGATTGATGCTAGTATGTCCTACTGCTTTTTAGGGATTTCAGCACTTCTAGTTTCTTGGCGATAAATTGAAAATTGGAGACTGATTGCTTTTGAGTACTTGATTGGTTATGGCATATTTGCTTGCTTTTCCCTCAACCACAATAATCAACCGTGTAATCTTTGTCATTAGTTACAAGGAAAATTAAGGAGGTGTTTGTATGTAGTAGACAATTCCTGCAACTATGTGCTCCATTCTGATGTTTAGTAATCTATTTTGGACTTTGAGGAAGTCCATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGAT

mRNA sequence

AAGCGTGATTGTGAGGGCTCGATATATCTATCCCTTTGCTTCTCCAGTTCGGCACAAAGACGAAGCAAGAAAAATAAGAGCGAAACAGAACTCAGAAATAAAAGCTGGGCGGCTCGAAGCGTGATTGTGAAGGCTCGATCAGCAGCGAGAGGAGAAATGAGGCCTACACCGATGGAGTTCTTTGCGGAGATGGAAGAACAGGGATCGACAGTAGCGATGGACGTGGATGATGTTGATCCACTTGAGATATTAGGCGAGGGCGTGATCTCAGCCGAGAACAAGCTCGCCGATGCCGATTTCTTCAACTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGAAATTCATTTCCCTGGTTCCATTCGAAACAAGTAGTCAGTTTACTAATCGTATGTTTATTGCTTCTGTTGATGAAACAAGATGATTGATGCTAGTATGTCCTACTGCTTTTTAGGGATTTCAGCACTTCTAGTTTCTTGGCGATAAATTGAAAATTGGAGACTGATTGCTTTTGAGTACTTGATTGGTTATGGCATATTTGCTTGCTTTTCCCTCAACCACAATAATCAACCGTGTAATCTTTGTCATTAGTTACAAGGAAAATTAAGGAGGTGTTTGTATGTAGTAGACAATTCCTGCAACTATGTGCTCCATTCTGATGTTTAGTAATCTATTTTGGACTTTGAGGAAGTCCATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGAT

Coding sequence (CDS)

AAGCGTGATTGTGAGGGCTCGATATATCTATCCCTTTGCTTCTCCAGTTCGGCACAAAGACGAAGCAAGAAAAATAAGAGCGAAACAGAACTCAGAAATAAAAGCTGGGCGGCTCGAAGCGTGATTGTGAAGGCTCGATCAGCAGCGAGAGGAGAAATGAGGCCTACACCGATGGAGTTCTTTGCGGAGATGGAAGAACAGGGATCGACAGTAGCGATGGACGTGGATGATGTTGATCCACTTGAGATATTAGGCGAGGGCGTGATCTCAGCCGAGAACAAGCTCGCCGATGCCGATTTCTTCAACTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGA

Protein sequence

KRDCEGSIYLSLCFSSSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN
BLAST of Carg11004 vs. NCBI nr
Match: XP_022964281.1 (small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein 1 [Cucurbita moschata] >XP_022964283.1 small acidic protein 1 [Cucurbita moschata] >XP_022964284.1 small acidic protein 1 [Cucurbita moschata] >XP_023000574.1 small acidic protein 1 [Cucurbita maxima] >XP_023000575.1 small acidic protein 1 [Cucurbita maxima] >XP_023000576.1 small acidic protein 1 [Cucurbita maxima] >XP_023000577.1 small acidic protein 1 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. NCBI nr
Match: XP_023513491.1 (small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513494.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513495.1 small acidic protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD+DFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADSDFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. NCBI nr
Match: XP_022138785.1 (small acidic protein 1 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 4.0e-23
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEI  EGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEIFSEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. NCBI nr
Match: XP_004147176.1 (PREDICTED: small acidic protein 1 [Cucumis sativus] >KGN61541.1 hypothetical protein Csa_2G166190 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 6.7e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. NCBI nr
Match: XP_008460713.1 (PREDICTED: small acidic protein 1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 8.8e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           +N
Sbjct: 61  VN 62

BLAST of Carg11004 vs. TAIR10
Match: AT4G13520.1 (small acidic protein 1)

HSP 1 Score: 80.5 bits (197), Expect = 7.4e-16
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRP  ++  +EM++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1   MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. TAIR10
Match: AT3G24280.1 (small acidic protein 2)

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 53  MRP-TPMEFFAEMEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFE 112
           MRP    +F  EME  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FE
Sbjct: 10  MRPMVYRDFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFE 69

Query: 113 DDFDDSDIN 115
           DDFDDSDIN
Sbjct: 70  DDFDDSDIN 78

BLAST of Carg11004 vs. Swiss-Prot
Match: sp|Q9T0H2|SMAP1_ARATH (Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRP  ++  +EM++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1   MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. Swiss-Prot
Match: sp|Q1ECS0|SMAP2_ARATH (Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 53  MRP-TPMEFFAEMEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFE 112
           MRP    +F  EME  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FE
Sbjct: 10  MRPMVYRDFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFE 69

Query: 113 DDFDDSDIN 115
           DDFDDSDIN
Sbjct: 70  DDFDDSDIN 78

BLAST of Carg11004 vs. TrEMBL
Match: tr|A0A0A0LNK1|A0A0A0LNK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. TrEMBL
Match: tr|A0A1S3CCM1|A0A1S3CCM1_CUCME (small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.8e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           +N
Sbjct: 61  VN 62

BLAST of Carg11004 vs. TrEMBL
Match: tr|F6HX06|F6HX06_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g00130 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPME++AE+++QG+TVAMDVDDVDPLEI GEGVIS +NKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEYYAELDDQGATVAMDVDDVDPLEIFGEGVISVDNKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

BLAST of Carg11004 vs. TrEMBL
Match: tr|A0A059B201|A0A059B201_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02882 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 43  VKARSAARGEMRPTPMEFFAEMEEQGSTVAMDVDDVDPLEIL-GEGVISAENKLADADFF 102
           V+ R  AR +MRPTPM++FAE+E+QG+TVAMDVDDVDPLEI  GEGV+S +NKLADADFF
Sbjct: 20  VRERERAREKMRPTPMDYFAELEDQGTTVAMDVDDVDPLEIFGGEGVLSVDNKLADADFF 79

Query: 103 NSFEDDFDDSDIN 115
           N+FEDDFDD+DIN
Sbjct: 80  NAFEDDFDDADIN 92

BLAST of Carg11004 vs. TrEMBL
Match: tr|A0A2C9W9B6|A0A2C9W9B6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G156300 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRP  M+FFA+MEEQGSTVAMDVDDVDPLEI GEGVI+ +NKLADADFFN+FEDDFDDSD
Sbjct: 1   MRPMQMDFFADMEEQGSTVAMDVDDVDPLEIFGEGVINVDNKLADADFFNNFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022964281.11.2e-24100.00small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein... [more]
XP_023513491.12.7e-2498.39small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic... [more]
XP_022138785.14.0e-2395.16small acidic protein 1 [Momordica charantia][more]
XP_004147176.16.7e-2395.16PREDICTED: small acidic protein 1 [Cucumis sativus] >KGN61541.1 hypothetical pro... [more]
XP_008460713.18.8e-2393.55PREDICTED: small acidic protein 1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT4G13520.17.4e-1659.68small acidic protein 1[more]
AT3G24280.17.0e-0646.38small acidic protein 2[more]
Match NameE-valueIdentityDescription
sp|Q9T0H2|SMAP1_ARATH1.3e-1459.68Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1[more]
sp|Q1ECS0|SMAP2_ARATH1.3e-0446.38Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LNK1|A0A0A0LNK1_CUCSA4.5e-2395.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1[more]
tr|A0A1S3CCM1|A0A1S3CCM1_CUCME5.8e-2393.55small acidic protein 1 OS=Cucumis melo OX=3656 GN=LOC103499479 PE=4 SV=1[more]
tr|F6HX06|F6HX06_VITVI1.9e-2185.48Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0077g00130 PE=4 SV=... [more]
tr|A0A059B201|A0A059B201_EUCGR3.2e-2175.34Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02882 PE=4 SV... [more]
tr|A0A2C9W9B6|A0A2C9W9B6_MANES1.6e-2085.48Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G156300 PE=4 SV=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11004-RACarg11004-RAmRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg11004Wild cucumber (PI 183967)carcpiB1114
Carg11004Wild cucumber (PI 183967)carcpiB1115
Carg11004Cucumber (Chinese Long) v2carcuB1092
Carg11004Cucumber (Chinese Long) v2carcuB1093
Carg11004Cucumber (Chinese Long) v3carcucB1125
Carg11004Cucumber (Chinese Long) v3carcucB1126
Carg11004Bottle gourd (USVL1VR-Ls)carlsiB983
Carg11004Bottle gourd (USVL1VR-Ls)carlsiB984
Carg11004Melon (DHL92) v3.5.1carmeB1045
Carg11004Melon (DHL92) v3.5.1carmeB1050
Carg11004Melon (DHL92) v3.6.1carmedB1059
Carg11004Melon (DHL92) v3.6.1carmedB1064
Carg11004Watermelon (Charleston Gray)carwcgB1045
Carg11004Watermelon (Charleston Gray)carwcgB1050
Carg11004Watermelon (97103) v1carwmB1073
Carg11004Watermelon (97103) v1carwmB1075
Carg11004Watermelon (97103) v2carwmbB1131
Carg11004Watermelon (97103) v2carwmbB1137
Carg11004Wax gourdcarwgoB1271
Carg11004Silver-seed gourdcarcarB267
Carg11004Silver-seed gourdcarcarB275
Carg11004Silver-seed gourdcarcarB615
Carg11004Silver-seed gourdcarcarB649
Carg11004Cucumber (Gy14) v2carcgybB1056
Carg11004Cucumber (Gy14) v2carcgybB1058
Carg11004Cucumber (Gy14) v2carcgybB1059
Carg11004Cucumber (Gy14) v1carcgyB1190
Carg11004Cucumber (Gy14) v1carcgyB1195
Carg11004Cucurbita maxima (Rimu)carcmaB1485
Carg11004Cucurbita maxima (Rimu)carcmaB1489
Carg11004Cucurbita maxima (Rimu)carcmaB1492
Carg11004Cucurbita maxima (Rimu)carcmaB1494
Carg11004Cucurbita moschata (Rifu)carcmoB1443
Carg11004Cucurbita moschata (Rifu)carcmoB1448
Carg11004Cucurbita moschata (Rifu)carcmoB1450
Carg11004Cucurbita moschata (Rifu)carcmoB1451
Carg11004Cucurbita pepo (Zucchini)carcpeB1501
Carg11004Cucurbita pepo (Zucchini)carcpeB1504
Carg11004Cucurbita pepo (Zucchini)carcpeB1506
Carg11004Cucurbita pepo (Zucchini)carcpeB1507