Carg10588 (gene) Silver-seed gourd

Overview
NameCarg10588
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPolyadenylate-binding protein
LocationCucurbita_argyrosperma_scaffold_031 : 107661 .. 111860 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGATTATAAAGTAAATCAGAAAATAGCATAAAAAAGAGGAATTGGCGGCGGATGGAGCCAGGCGTCGGAAAAGGAAATTGAAACCAAGGGCTGAGATTAAAGTGTAGTCCTTAATCCTAGGGTGTATATAAGCCACCGCGCATTGTCCCAAAAGCAGCCATGGTTTGTAATTGTATGGTACGGCGTGTTGAAGCTCCTAATAAATCATCGTGAAAGCTTAGAGTTAGACCCTAATCCACTCCTCTCTTTCTGCTTCGCTTTCCTTTAAACACTTGGATTCCGATTTGTTTATGTTCTATTTTGTTTTTCTCTCTTTCAATTCAGATTCTTTTACCCTTTTGGTTTAGGGTTTAGGGTGTACATTAAGATTTTCTTTCGTTCTTTTTCTTTTCCGTTTTTGCCTTTTTCTCTCACTCTTCAATACGGAGGAAGATAAGATGCAAAACAACGGTTCTGATTCGCAGCCTCCGGAAACAAATCATCAACGCCACCAACACCCGCCGCAGAAGTCGTGGATGCCACTGCAGTACCGCCCACCGGCGATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATTGCGCCGCCGTTGCCGCCGCCGTATATGCACTATCATTATCATTATCAGCCTCACCATCTCCCTATGCAGCATTCGCAGCCGCTGCAGGGATCTGGTGGCGAAAACAAGACCATTTGGGTTGGTGACTTGCAGCATTGGATGGACGAGACTTACCTCCATAACTGCTTTGGTTCATTCGGCGAGGTTCGGTTTTATCTCCTCTTTTTTCACTTATCTTTACGTTTATTTTACGCTTCGCATTTATAGTTTGTTCGTGAATTTTCAATCGGTGCATTTGTAGTCTAATATGTTGTTACGATGAATCGATAATCATTCTTTGCAGGAATTGTTGCAGTTCTCAATTAAATTCAATCTATTTTATTGGATGAAATTATTCATTCTCTTCATTAAAATAATGGTACAAAATTGGAATGATTCATTTTTCCTATTCGTTCTTTTAGTTGAATACGTCTACTTTGTTTCTAGATGATTCTTTTTAGGAGGTTTTGTTTCGGTACTTGATTCTCGTTATGCAATTTGAGCGTACAAGTGCACAACTAAATGACGAATATTATCTTGATCGAATATTTGGCTTGGTTTTTGAGAAAAAATGGTTTTTGCTACCGTTGAGGAAGTAAGAATTTATTGGAGATTGAGTATTGCGATTTATTTACATTTTATCTTATGACGATAGTAGATCTGAGAAGAATTTGCTTAAAAATGCAGCACTATATTTTATATAGAAGTATGGTTTAGACTCTTGGCCCTGTTTAGAATGGCTGTCGCTTCTAACCTCTCAAGTTTTATCTTCCATTGAATATTATGAAGAGGATATAGAGAAATATTATATTAGATTATATTATTAATAAATGGAAGATCTAATTCTCTAATAATTGACGTTGACATCTTATTGCAAATTTTGTTGTTGGGGGCTTCACTTAGATTTTTATATTTATTACTGTTTCTCCAGCTTTGTACAGGGATGTGTATATATGCTTTCTCAACTGAATCTTGTTCTTTTCCTTACTTTCTTGGGAAAGAAAATTAATGTAATCACCCTCAGCATTTCCAAAAAAAAAAGAAAGAAAGAAAAAAGAAACTTGTTTTAACAAAAATCTTGAATTGTTCTTGGTTTGGAATGATCATGTTGAACTAAGATTGTTCTGGTTTCTGTATGATGCAGATTTCATCTATCAAGATCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTCTTTGCTCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCTGGAATGTGCATGCCAGATACAGAACAGGCTTTCCGCCTGAACTGGGCAACATTTAGCACTGGTGACAAGCGATCAGACAATGATCCTGATCTTTCTATCTTTGTTGGAGACTTGGCTGCAGATGTTACTGATACTTTGCTGTACGACACATTTTCTAGTAAATTTCCCTCTGTCAAAGCAGCAAAAGTTGTCATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTTCGGTTTGGAGATGACAATGAAAGGTCTCAAGCGATGACTGAAATGAATGGTGTACATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACACCCAGAAAATCTTCTGGATATCAGCAACAACGTGCTTCATTAGGTATATTTAAGTGTTTTGGGGCTGCGATATAGTATGCTTAACTTTAAACCACTTCCAAGAGGATTAGGATGTCTTTGGGGTTGGTATGCAGTTCTGGAGTAAATAAAGATAGGCAAGCTTTTGTCTTCTACCAAGCATTTGGTTCAAGACTGGGGTTACGTATCAAAAGAGTTGTTAAAATGAAAACTATAATGCTAACAAATTAGGATATACTGGGTCTTCCTCTCTTACAATTTTGGAGTTTGATTTTATTGTTATCATTAGAAATTTTGTTGAGATTAATGTTTGTGTCAAACATCAATTTTAGACAACAAAAGACTTGTGCTATCTTCTGTAGATCTGTAATAATGTAGACGGAAGTGGTCTCATGTACTCAAATAGGGGTTGCAAGTCTGTTTACTTCCAATGCTGAATCTATATGTTAATCTTGCCTGAAAATTATTTGATTGCTAAGATAGGCGATGATCTAGTGTCAATTTGCATCAGAAAGTTTTGATTTGGGGCCATTTTTATGGTATCCTTCTTGGGGAACTTTACTAGAGCAATCTTGTGAAAATTGAATCATCCTTGAGAAGTAGTAGTTCTGAAATAGTGTCTCCTCTGCATGCCTGTGTTCTTAGGGTTTACTCATGGTTGTAGACTTCCCGACCCATTTTAGACTGCTTAAACACTTGTCTTGCTCTGGTTTTTATAGGAGCATATTCAACAAATGGTGCCTTTAGCCAAGGTTTTCAATCGGAAGGAGATTCTGCAAATACAACTGTGAGTTGCTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACAGCTAGAGATTCCACCCTGTATTATTGGGTTAACCTGAACTTTCCTTTTAGATATTTGTTGGAGGGCTCGATCCTAATGTGAACGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTAGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGGTAAAGTTAGAAATCGGGCTTTCCTAACATATAAACAATGAATTAGTAGCATTTATCTGGTTATTGCTTTTGTTAATCTATTTTTAGTTCTACTAAATTTCAAGGCGTATTCCTTTCTATTTTCCTCTGCAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGGAACTGTAGTTGGCAAGCAAACTGTTCGCCTTTCATGGGGCCGAAATCCAGCAAATAAGCAGGCAAATTACCCTTCTCTCTTAATGTGAAAATTATAACAAAAGAATTATGCAGGCTCTCAATCCATGACTTTCCTGGAGGGCAGGATAGAAATACAACTAAATGAGCTGTTTTTAGAATTCAAATTATGTCTGAGCTATATTTTGGTTGATGAATTTCTGCGTTCGTTCTTTTATCCTTCACAAAAATGTATTTGTCTAACTGAAAACTCATGTGGCCTTGTGTACTTGTTATTTAAAACTTGTCTCATCTGGAACTGAATTCGAAAACACTTAGCCTGGAAATGTTTTGTTTACATTGCTTCTTATCATCTGAAGCGTTTGATTTAGTTGGAAACAAGTTTAACAGTATTTCTTCTTGCATTTGTTGAGGGTTGGCAGTTCAGAGACTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGACACATATATGATGGCTATGGATATGGTCTTCCACCTCAGGATCCAAGTATGTATCATGCAGCTTATGGAGCTTACCCTTTCTATGGAAGCCATCAACAACAAGTAATCTGAATACACGAAGCTCCCATTAATTCTTAAGCCCTTTCCAAGTAGAAACCTGAAATTGCTTCAGCTTCTGGATTTCACTTGGTTTTAGATTTTTCCCCCCTCCATATTAACCATCCTTCCATCTACATAGTGGAACTGAATTTTGATGACCTAAGCTAGTACTATCGTAGAGATATTTATATATTTATTTCATTCAGATGGTTACTGGATTGTGA

mRNA sequence

AGTGATTATAAAGTAAATCAGAAAATAGCATAAAAAAGAGGAATTGGCGGCGGATGGAGCCAGGCGTCGGAAAAGGAAATTGAAACCAAGGGCTGAGATTAAAGTGTAGTCCTTAATCCTAGGGTGTATATAAGCCACCGCGCATTGTCCCAAAAGCAGCCATGGTTTGTAATTGTATGGTACGGCGTGTTGAAGCTCCTAATAAATCATCGTGAAAGCTTAGAGTTAGACCCTAATCCACTCCTCTCTTTCTGCTTCGCTTTCCTTTAAACACTTGGATTCCGATTTGTTTATGTTCTATTTTGTTTTTCTCTCTTTCAATTCAGATTCTTTTACCCTTTTGGTTTAGGGTTTAGGGTGTACATTAAGATTTTCTTTCGTTCTTTTTCTTTTCCGTTTTTGCCTTTTTCTCTCACTCTTCAATACGGAGGAAGATAAGATGCAAAACAACGGTTCTGATTCGCAGCCTCCGGAAACAAATCATCAACGCCACCAACACCCGCCGCAGAAGTCGTGGATGCCACTGCAGTACCGCCCACCGGCGATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATTGCGCCGCCGTTGCCGCCGCCGTATATGCACTATCATTATCATTATCAGCCTCACCATCTCCCTATGCAGCATTCGCAGCCGCTGCAGGGATCTGGTGGCGAAAACAAGACCATTTGGGTTGGTGACTTGCAGCATTGGATGGACGAGACTTACCTCCATAACTGCTTTGGTTCATTCGGCGAGGAGCATATTCAACAAATGGTGCCTTTAGCCAAGATATTTGTTGGAGGGCTCGATCCTAATGTGAACGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTAGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGAGACTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGACACATATATGATGGCTATGGATATGGTCTTCCACCTCAGGATCCAAGTATGTATCATGCAGCTTATGGAGCTTACCCTTTCTATGGAAGCCATCAACAACAAATGGTTACTGGATTGTGA

Coding sequence (CDS)

ATGCAAAACAACGGTTCTGATTCGCAGCCTCCGGAAACAAATCATCAACGCCACCAACACCCGCCGCAGAAGTCGTGGATGCCACTGCAGTACCGCCCACCGGCGATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATTGCGCCGCCGTTGCCGCCGCCGTATATGCACTATCATTATCATTATCAGCCTCACCATCTCCCTATGCAGCATTCGCAGCCGCTGCAGGGATCTGGTGGCGAAAACAAGACCATTTGGGTTGGTGACTTGCAGCATTGGATGGACGAGACTTACCTCCATAACTGCTTTGGTTCATTCGGCGAGGAGCATATTCAACAAATGGTGCCTTTAGCCAAGATATTTGTTGGAGGGCTCGATCCTAATGTGAACGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTAGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGAGACTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGACACATATATGATGGCTATGGATATGGTCTTCCACCTCAGGATCCAAGTATGTATCATGCAGCTTATGGAGCTTACCCTTTCTATGGAAGCCATCAACAACAAATGGTTACTGGATTGTGA

Protein sequence

MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMPHHMMTPQHYIAPPLPPPYMHYHYHYQPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEEHIQQMVPLAKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRDFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFYGSHQQQMVTGL
Homology
[Close]
BLAST of Carg10588 vs. NCBI nr
Match: XP_022940926.1 (polyadenylate-binding protein RBP47C-like [Cucurbita moschata] >XP_023523672.1 polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 2.1e-81
Identity = 204/420 (48.57%), Postives = 207/420 (49.29%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60
           MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX
Sbjct: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60

Query: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE---------- 120
           XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE          
Sbjct: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEISSIKIIRNK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QTGLSEGYGFVEFFAHATAEKALQNYSGMCMPDTEQAFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 ---------------------------------------------------EHIQQMVPL 215
                                                              E  Q M  +
Sbjct: 181 FVGDLAADVTDTLLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

[Close]
BLAST of Carg10588 vs. NCBI nr
Match: XP_022982257.1 (polyadenylate-binding protein RBP47C-like [Cucurbita maxima])

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 199/420 (47.38%), Postives = 202/420 (48.10%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60
           MQNNGSDSQPPETN QRHQ PPQKSWMPLQYRPPAMVM HXXXXX  YIAPPLXXXXXXX
Sbjct: 1   MQNNGSDSQPPETN-QRHQQPPQKSWMPLQYRPPAMVMPHXXXXXXXYIAPPLXXXXXXX 60

Query: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE---------- 120
           XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE          
Sbjct: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEISSIKIIRNK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QTGLSEGYGFVEFFAHATAEKALQNYSGMCMPDTEQAFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 ---------------------------------------------------EHIQQMVPL 215
                                                              E  Q M  +
Sbjct: 181 FVGDLAADVTDTLLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

[Close]
BLAST of Carg10588 vs. NCBI nr
Match: XP_023535397.1 (polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 3.5e-44
Identity = 162/421 (38.48%), Postives = 170/421 (40.38%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQY-RPPAMVMXHXXXXXQHYIAPPLXXXXXX 60
           MQ+NGSDSQP E N QRHQ P  +SWM +QY        X XXXXX        XXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQP--QSWMSMQYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE--------- 120
           XXXXXX         QPLQGSGGENKTIWVGDL HWMDE+YLH CF S GE         
Sbjct: 61  XXXXXXXXXXXXXXXQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLS 180

Query: 181 ----------------------------------------------------EHIQQMV- 215
                                                               E  Q M  
Sbjct: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240

[Close]
BLAST of Carg10588 vs. NCBI nr
Match: XP_022936173.1 (polyadenylate-binding protein RBP47C-like [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 160/421 (38.00%), Postives = 167/421 (39.67%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQY-RPPAMVMXHXXXXXQHYIAPPLXXXXXX 60
           MQ+NGSDSQP E N QRHQ P  +SWM +QY        X XXXXX        XXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQP--QSWMSMQYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE--------- 120
           XXXXXX         QPLQGSGGENKTIWVGDL HWMDE+YLHNCF S GE         
Sbjct: 61  XXXXXXXXXXXXXXXQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEIASIKIIRN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLS 180

Query: 181 ----------------------------------------------------EHIQQMVP 215
                                                               E  Q M  
Sbjct: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240

[Close]
BLAST of Carg10588 vs. NCBI nr
Match: XP_022976308.1 (polyadenylate-binding protein RBP47C-like [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 158/421 (37.53%), Postives = 170/421 (40.38%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQY-RPPAMVMXHXXXXXQHYIAPPLXXXXXX 60
           MQ+NGSDSQP E N QRHQ P  +SWM +QY        X XXXXX        XXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQP--QSWMSMQYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEEHIQQMV-- 120
           XXXXXX         QPLQGSGGENKTIWVGDL HWMDE+YLH CF S GE  + +++  
Sbjct: 61  XXXXXXXXXXXXXXXQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISLIKIIRN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLS 180

Query: 181 ------------------------------------------------------------ 215
                                                                       
Sbjct: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240

[Close]
BLAST of Carg10588 vs. TAIR10
Match: AT1G47500.1 (RNA-binding protein 47C')

HSP 1 Score: 120.9 bits (302), Expect = 9.5e-28
Identity = 65/127 (51.18%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPFS++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 368 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 427


HSP 2 Score: 52.4 bits (124), Expect = 4.1e-07
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDLQ+WMDE YL++ F S  E  I
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREI 131

[Close]
BLAST of Carg10588 vs. TAIR10
Match: AT1G47490.1 (RNA-binding protein 47C)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-27
Identity = 64/127 (50.39%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPF+++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 366 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 425


HSP 2 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDL HWMDE YL++ F S  E  I
Sbjct: 98  GENKTIWVGDLHHWMDEAYLNSSFASGDEREI 129

[Close]
BLAST of Carg10588 vs. TAIR10
Match: AT1G49600.1 (RNA-binding protein 47A)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19
Identity = 55/117 (47.01%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V +EDL QPFS +GE+VSVKIPVGKGCGFVQFANR                
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388

Query: 182 ------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYP 205
                             D GNQWNG Y  G    GY  G   QD +MY  A  A P
Sbjct: 389 KNTVRLSWGRSPNKQWRSDSGNQWNGGYSRG---QGYNNGYANQDSNMYATAAAAVP 442


HSP 2 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 85  KTIWVGDLQHWMDETYLHNCFGSFGE 111
           KT+WVGDL HWMDETYLH CF    E
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNE 144

[Close]
BLAST of Carg10588 vs. TAIR10
Match: AT3G19130.1 (RNA-binding protein 47B)

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-18
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 120 AKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 166
           A IFVGG+DP+V DEDLRQPFSQ+GE+VSVKIPVGKGCGFVQFA+R
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADR 366


HSP 2 Score: 58.9 bits (141), Expect = 4.4e-09
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 78  QGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           +GSG + KT+WVGDL HWMDETYLH+CF   GE
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGE 133

[Close]
BLAST of Carg10588 vs. TAIR10
Match: AT5G54900.1 (RNA-binding protein 45A)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 52/127 (40.94%), Postives = 65/127 (51.18%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD NV D++L+  F Q+GE++ VKIP GK CGFVQ+AN+                
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321

Query: 182 ------DFGN---------QWNGAYYGGH---IYDGYGYGL--PPQDPSMYHAAYGAYPF 213
                  +G          QWNG  Y G+      GYGY    P QDP+ Y   YG Y  
Sbjct: 322 GQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGYGYAAQPPTQDPNAY---YGGYTG 381


HSP 2 Score: 44.7 bits (104), Expect = 8.6e-05
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 0 

Query: 79  GSGGENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           GS  + K++W+GDLQ WMDE Y+ + F   GE
Sbjct: 54  GSASDVKSLWIGDLQQWMDENYIMSVFAQSGE 85

[Close]
BLAST of Carg10588 vs. Swiss-Prot
Match: sp|Q9SX80|R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 65/127 (51.18%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPFS++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 368 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 427


HSP 2 Score: 52.4 bits (124), Expect = 7.5e-06
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDLQ+WMDE YL++ F S  E  I
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREI 131

[Close]
BLAST of Carg10588 vs. Swiss-Prot
Match: sp|Q9SX79|RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-26
Identity = 64/127 (50.39%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPF+++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 366 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 425


HSP 2 Score: 53.5 bits (127), Expect = 3.3e-06
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDL HWMDE YL++ F S  E  I
Sbjct: 98  GENKTIWVGDLHHWMDEAYLNSSFASGDEREI 129

[Close]
BLAST of Carg10588 vs. Swiss-Prot
Match: sp|Q9LEB3|RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 61/129 (47.29%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD  V DE+LRQ F+Q+GE+VSVKIP GKGCGFVQF++R                
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIG 356

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPP-QDPSMY--HAAYGAY 212
                              D G+QWNG Y G   Y GYGYG    QD  MY   AAYGA 
Sbjct: 357 KQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGAS 416


HSP 2 Score: 55.5 bits (132), Expect = 8.8e-07
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 83  ENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           +NKTIW+GDLQ WMDE+YLH+CF   GE
Sbjct: 82  DNKTIWIGDLQQWMDESYLHSCFSQAGE 109

[Close]
BLAST of Carg10588 vs. Swiss-Prot
Match: sp|F4I3B3|RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-18
Identity = 55/117 (47.01%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V +EDL QPFS +GE+VSVKIPVGKGCGFVQFANR                
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388

Query: 182 ------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYP 205
                             D GNQWNG Y  G    GY  G   QD +MY  A  A P
Sbjct: 389 KNTVRLSWGRSPNKQWRSDSGNQWNGGYSRG---QGYNNGYANQDSNMYATAAAAVP 442


HSP 2 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 85  KTIWVGDLQHWMDETYLHNCFGSFGE 111
           KT+WVGDL HWMDETYLH CF    E
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNE 144

[Close]
BLAST of Carg10588 vs. Swiss-Prot
Match: sp|Q0WW84|RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.4e-17
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 120 AKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 166
           A IFVGG+DP+V DEDLRQPFSQ+GE+VSVKIPVGKGCGFVQFA+R
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADR 366


HSP 2 Score: 58.9 bits (141), Expect = 8.0e-08
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 78  QGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           +GSG + KT+WVGDL HWMDETYLH+CF   GE
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGE 133

[Close]
BLAST of Carg10588 vs. TrEMBL
Match: tr|A0A1U8PBR6|A0A1U8PBR6_GOSHI (polyadenylate-binding protein RBP47C-like OS=Gossypium hirsutum OX=3635 GN=LOC107957552 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.4e-43
Identity = 137/421 (32.54%), Postives = 154/421 (36.58%), Query Frame = 0 

Query: 2   QNNGSDSQPPETNHQRHQHPP--QKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXX 61
           QN+G DSQP +  +QR Q PP  Q  W+ +QY   AMVM H     QH++APPL      
Sbjct: 3   QNSGLDSQPSQEQNQRQQQPPRSQPQWVAMQYPAAAMVMQHQMMQPQHFVAPPLPPQHYM 62

Query: 62  XXXXXXPHHLPMQ-HSQPLQGSG-GENKTIWVGDLQHWMDETYLHNCFGSFGE------- 121
                  HHL +  H+Q   G G GENKT+WVGDL HWMDE YLH+CF S GE       
Sbjct: 63  PY-----HHLHLNGHAQQGSGGGSGENKTVWVGDLYHWMDENYLHSCFASTGEIASIKVI 122

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 123 RNKQTGLSEGYGFVEFFSHATAEKVLQSYSSVLMPNTDQPFRLNWATLSTGEKRSENGPD 182

Query: 182 ------------------EHIQQMVPLAK------------------------------- 214
                             E      P  K                               
Sbjct: 183 LSIFVGDLGADVTDSLLHETFASKYPSVKTAKVVIDANTGRSKGYGFVRFGDETERSQAM 242

[Close]
BLAST of Carg10588 vs. TrEMBL
Match: tr|A0A2P5VVE4|A0A2P5VVE4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37926 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 138/422 (32.70%), Postives = 155/422 (36.73%), Query Frame = 0 

Query: 2   QNNGSDSQPPETNHQRHQHPP--QKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXX 61
           QN+G DSQP +  +QR Q PP  Q  W+ +QY   AMVM H     QH++APPL      
Sbjct: 3   QNSGLDSQPSQEQNQRQQQPPRSQPQWVAMQYPAAAMVMQHQMMQPQHFVAPPLPPQHYM 62

Query: 62  XXXXXXPHHLPMQ-HSQPLQGSG-GENKTIWVGDLQHWMDETYLHNCFGSFGE------- 121
                  HHL +  H+Q   G G GENKT+WVGDL HWMDE YLH+CF S GE       
Sbjct: 63  PY-----HHLHLNGHAQQGSGGGSGENKTVWVGDLYHWMDENYLHSCFASTGEIASIKVI 122

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 123 RNKQTGLSEGYGFVEFFSHATAEKVLQSYSSVLMPNTDQPFRLNWATLSTGEKRSENGPD 182

Query: 182 ------------------EHIQQMVPLAK------------------------------- 214
                             E      P  K                               
Sbjct: 183 LSIFVGDLGADVTDSLLHETFASKYPSVKTAKVVIDANTGRSKGYGFVRFGDETERSQAM 242

[Close]
BLAST of Carg10588 vs. TrEMBL
Match: tr|A0A2R6R3E5|A0A2R6R3E5_ACTCH (Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11799 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.3e-42
Identity = 102/197 (51.78%), Postives = 113/197 (57.36%), Query Frame = 0 

Query: 80  SGGENKTIWVGDLQHWMDETYLHNCFGSFGE----EHIQQM------------------- 139
           S GENKTIW+GDLQ+WMDE YLH+CF S GE     +I +M                   
Sbjct: 74  SNGENKTIWIGDLQNWMDEDYLHSCFASTGEIYDLGYIWRMSRAGGYVSSGASAQGSQSD 133

Query: 140 --VPLAKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR--------- 199
                  IFVGGL PNV DEDLRQPFSQYGEIVSVKIPV +GCGFVQFANR         
Sbjct: 134 GDYTNTTIFVGGLGPNVKDEDLRQPFSQYGEIVSVKIPVRRGCGFVQFANRNNAEEALQK 193

Query: 200 -------------------------DFGNQWNGAYYGGHIYDGYGYGLP-PQDPSMY--- 214
                                    DFGN  +GAYYGG IYDG+GY +P P DPSMY   
Sbjct: 194 LNGTTIADQTVRLSWGRNPANKQRADFGNSLSGAYYGGQIYDGFGYAVPQPHDPSMYAAA 253

[Close]
BLAST of Carg10588 vs. TrEMBL
Match: tr|A0A1S3BUU0|A0A1S3BUU0_CUCME (polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.9e-41
Identity = 155/421 (36.82%), Postives = 165/421 (39.19%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60
           MQ+NGSDSQP E N QRHQ  PQ               X XXXXX        XXXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQQPQPWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE---------- 120
           XXXXX   LP+QHSQPL+GSG ENKTIWVGDL HWMDE+YLH+CF S GE          
Sbjct: 61  XXXXXXXXLPIQHSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QTGLSEGYGFVEFLSHATAEKVLQNYSGMFMPSTEQTFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 ---------------------------------------------------EHIQQMVPL 214
                                                              E  Q M  +
Sbjct: 181 FVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

[Close]
BLAST of Carg10588 vs. TrEMBL
Match: tr|A0A2P5RUB1|A0A2P5RUB1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD12639 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 134/421 (31.83%), Postives = 151/421 (35.87%), Query Frame = 0 

Query: 2   QNNGSDSQPPETNHQRHQHPP--QKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXX 61
           QN+G DSQP +  +QR Q PP  Q  W+ +QY   AMVM H     QH++A PL      
Sbjct: 3   QNSGLDSQPSQEQNQRQQQPPRSQPQWVAMQYPAAAMVMQHQMMQPQHFVASPLPPQHYM 62

Query: 62  XXXXXXPHHLPMQ-HSQPLQGSG-GENKTIWVGDLQHWMDETYLHNCFGSFGE------- 121
                  HHL +  H+Q   G G GENKT+WVGDL HWMDE YLH+CF S GE       
Sbjct: 63  PY-----HHLHLNGHAQQGSGGGSGENKTVWVGDLYHWMDENYLHSCFASTGEIASIKVI 122

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 123 RNKQTGLSEGYGFVEFFSHATAEKVLQSYSSILMPNTDQPFRLNWATLSTGEKRSENGPD 182

Query: 182 ------------------EHIQQMVPLAK------------------------------- 214
                             E      P  K                               
Sbjct: 183 LSIFVGDLGADVTDSLLHETFASKYPSVKAARVVIVANTGRSKGYGFVRFGDETERSQAM 242

The following BLAST results are available for this feature:
BLAST of Carg10588 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940926.12.1e-8148.57polyadenylate-binding protein RBP47C-like [Cucurbita moschata] >XP_023523672.1 p... [more]
XP_022982257.11.5e-7647.38polyadenylate-binding protein RBP47C-like [Cucurbita maxima][more]
XP_023535397.13.5e-4438.48polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo][more]
XP_022936173.11.0e-4338.00polyadenylate-binding protein RBP47C-like [Cucurbita moschata][more]
XP_022976308.11.0e-4337.53polyadenylate-binding protein RBP47C-like [Cucurbita maxima][more]
BLAST of Carg10588 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G47500.19.5e-2851.18RNA-binding protein 47C'[more]
AT1G47490.12.1e-2750.39RNA-binding protein 47C[more]
AT1G49600.11.6e-1947.01RNA-binding protein 47A[more]
AT3G19130.15.2e-1884.78RNA-binding protein 47B[more]
AT5G54900.11.1e-1540.94RNA-binding protein 45A[more]
BLAST of Carg10588 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SX80|R47CP_ARATH1.7e-2651.18Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'... [more]
sp|Q9SX79|RB47C_ARATH3.8e-2650.39Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C P... [more]
sp|Q9LEB3|RBP47_NICPL1.2e-1947.29Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4... [more]
sp|F4I3B3|RB47A_ARATH2.9e-1847.01Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P... [more]
sp|Q0WW84|RB47B_ARATH9.4e-1784.78Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P... [more]
BLAST of Carg10588 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1U8PBR6|A0A1U8PBR6_GOSHI7.4e-4332.54polyadenylate-binding protein RBP47C-like OS=Gossypium hirsutum OX=3635 GN=LOC10... [more]
tr|A0A2P5VVE4|A0A2P5VVE4_GOSBA2.8e-4232.70Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37926 PE=4 SV... [more]
tr|A0A2R6R3E5|A0A2R6R3E5_ACTCH6.3e-4251.78Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|A0A1S3BUU0|A0A1S3BUU0_CUCME6.9e-4136.82polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523... [more]
tr|A0A2P5RUB1|A0A2P5RUB1_GOSBA2.0e-4031.83Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD12639 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10588-RACarg10588-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 121..191
e-value: 6.6E-9
score: 45.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 122..166
e-value: 9.7E-13
score: 47.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 120..179
score: 13.089
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 112..167
e-value: 5.8E-15
score: 56.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 166..213
NoneNo IPR availablePANTHERPTHR43955:SF5POLYADENYLATE-BINDING PROTEIN RBP47C-RELATEDcoord: 7..110
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 121..166
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 7..110
NoneNo IPR availablePANTHERPTHR43955:SF5POLYADENYLATE-BINDING PROTEIN RBP47C-RELATEDcoord: 166..213
NoneNo IPR availablePANTHERPTHR43955:SF5POLYADENYLATE-BINDING PROTEIN RBP47C-RELATEDcoord: 121..166
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 113..166
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 55..110

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10588Lsi04G015820Bottle gourd (USVL1VR-Ls)carlsiB708
Carg10588Cla97C05G101260Watermelon (97103) v2carwmbB0807
Carg10588Bhi04G000285Wax gourdcarwgoB0902
Carg10588Bhi09G002755Wax gourdcarwgoB0905
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10588Carg08764Silver-seed gourdcarcarB124
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10588Watermelon (97103) v2carwmbB0803
Carg10588Watermelon (97103) v2carwmbB0805
Carg10588Watermelon (97103) v2carwmbB0812
Carg10588Silver-seed gourdcarcarB224
Carg10588Bottle gourd (USVL1VR-Ls)carlsiB706
Carg10588Silver-seed gourdcarcarB427
Carg10588Silver-seed gourdcarcarB606
Carg10588Cucumber (Gy14) v2carcgybB0766
Carg10588Cucumber (Gy14) v2carcgybB0767
Carg10588Cucumber (Gy14) v2carcgybB0768
Carg10588Cucumber (Gy14) v1carcgyB0871
Carg10588Cucumber (Gy14) v1carcgyB0872
Carg10588Cucumber (Gy14) v1carcgyB0873
Carg10588Cucumber (Gy14) v1carcgyB0874
Carg10588Cucurbita maxima (Rimu)carcmaB1065
Carg10588Cucurbita maxima (Rimu)carcmaB1067
Carg10588Cucurbita maxima (Rimu)carcmaB1069
Carg10588Cucurbita maxima (Rimu)carcmaB1071
Carg10588Cucurbita maxima (Rimu)carcmaB1073
Carg10588Cucurbita moschata (Rifu)carcmoB1040
Carg10588Cucurbita moschata (Rifu)carcmoB1042
Carg10588Cucurbita moschata (Rifu)carcmoB1044
Carg10588Cucurbita moschata (Rifu)carcmoB1047
Carg10588Cucurbita pepo (Zucchini)carcpeB1079
Carg10588Cucurbita pepo (Zucchini)carcpeB1082
Carg10588Cucurbita pepo (Zucchini)carcpeB1083
Carg10588Cucurbita pepo (Zucchini)carcpeB1084
Carg10588Wild cucumber (PI 183967)carcpiB0806
Carg10588Wild cucumber (PI 183967)carcpiB0807
Carg10588Wild cucumber (PI 183967)carcpiB0810
Carg10588Cucumber (Chinese Long) v2carcuB0788
Carg10588Cucumber (Chinese Long) v2carcuB0789
Carg10588Cucumber (Chinese Long) v3carcucB0809
Carg10588Cucumber (Chinese Long) v3carcucB0810
Carg10588Bottle gourd (USVL1VR-Ls)carlsiB710
Carg10588Melon (DHL92) v3.5.1carmeB0765
Carg10588Melon (DHL92) v3.5.1carmeB0767
Carg10588Melon (DHL92) v3.5.1carmeB0769
Carg10588Melon (DHL92) v3.6.1carmedB0779
Carg10588Melon (DHL92) v3.6.1carmedB0781
Carg10588Watermelon (Charleston Gray)carwcgB0745
Carg10588Watermelon (Charleston Gray)carwcgB0746
Carg10588Watermelon (Charleston Gray)carwcgB0748
Carg10588Watermelon (Charleston Gray)carwcgB0752
Carg10588Watermelon (97103) v1carwmB0766
Carg10588Watermelon (97103) v1carwmB0769
Carg10588Watermelon (97103) v1carwmB0773