Carg10588-RA (mRNA) Silver-seed gourd

Overview
NameCarg10588-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPolyadenylate-binding protein
LocationCucurbita_argyrosperma_scaffold_031 : 107661 .. 111860 (-)
Sequence length1093
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGATTATAAAGTAAATCAGAAAATAGCATAAAAAAGAGGAATTGGCGGCGGATGGAGCCAGGCGTCGGAAAAGGAAATTGAAACCAAGGGCTGAGATTAAAGTGTAGTCCTTAATCCTAGGGTGTATATAAGCCACCGCGCATTGTCCCAAAAGCAGCCATGGTTTGTAATTGTATGGTACGGCGTGTTGAAGCTCCTAATAAATCATCGTGAAAGCTTAGAGTTAGACCCTAATCCACTCCTCTCTTTCTGCTTCGCTTTCCTTTAAACACTTGGATTCCGATTTGTTTATGTTCTATTTTGTTTTTCTCTCTTTCAATTCAGATTCTTTTACCCTTTTGGTTTAGGGTTTAGGGTGTACATTAAGATTTTCTTTCGTTCTTTTTCTTTTCCGTTTTTGCCTTTTTCTCTCACTCTTCAATACGGAGGAAGATAAGATGCAAAACAACGGTTCTGATTCGCAGCCTCCGGAAACAAATCATCAACGCCACCAACACCCGCCGCAGAAGTCGTGGATGCCACTGCAGTACCGCCCACCGGCGATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATTGCGCCGCCGTTGCCGCCGCCGTATATGCACTATCATTATCATTATCAGCCTCACCATCTCCCTATGCAGCATTCGCAGCCGCTGCAGGGATCTGGTGGCGAAAACAAGACCATTTGGGTTGGTGACTTGCAGCATTGGATGGACGAGACTTACCTCCATAACTGCTTTGGTTCATTCGGCGAGGTTCGGTTTTATCTCCTCTTTTTTCACTTATCTTTACGTTTATTTTACGCTTCGCATTTATAGTTTGTTCGTGAATTTTCAATCGGTGCATTTGTAGTCTAATATGTTGTTACGATGAATCGATAATCATTCTTTGCAGGAATTGTTGCAGTTCTCAATTAAATTCAATCTATTTTATTGGATGAAATTATTCATTCTCTTCATTAAAATAATGGTACAAAATTGGAATGATTCATTTTTCCTATTCGTTCTTTTAGTTGAATACGTCTACTTTGTTTCTAGATGATTCTTTTTAGGAGGTTTTGTTTCGGTACTTGATTCTCGTTATGCAATTTGAGCGTACAAGTGCACAACTAAATGACGAATATTATCTTGATCGAATATTTGGCTTGGTTTTTGAGAAAAAATGGTTTTTGCTACCGTTGAGGAAGTAAGAATTTATTGGAGATTGAGTATTGCGATTTATTTACATTTTATCTTATGACGATAGTAGATCTGAGAAGAATTTGCTTAAAAATGCAGCACTATATTTTATATAGAAGTATGGTTTAGACTCTTGGCCCTGTTTAGAATGGCTGTCGCTTCTAACCTCTCAAGTTTTATCTTCCATTGAATATTATGAAGAGGATATAGAGAAATATTATATTAGATTATATTATTAATAAATGGAAGATCTAATTCTCTAATAATTGACGTTGACATCTTATTGCAAATTTTGTTGTTGGGGGCTTCACTTAGATTTTTATATTTATTACTGTTTCTCCAGCTTTGTACAGGGATGTGTATATATGCTTTCTCAACTGAATCTTGTTCTTTTCCTTACTTTCTTGGGAAAGAAAATTAATGTAATCACCCTCAGCATTTCCAAAAAAAAAAGAAAGAAAGAAAAAAGAAACTTGTTTTAACAAAAATCTTGAATTGTTCTTGGTTTGGAATGATCATGTTGAACTAAGATTGTTCTGGTTTCTGTATGATGCAGATTTCATCTATCAAGATCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTCTTTGCTCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCTGGAATGTGCATGCCAGATACAGAACAGGCTTTCCGCCTGAACTGGGCAACATTTAGCACTGGTGACAAGCGATCAGACAATGATCCTGATCTTTCTATCTTTGTTGGAGACTTGGCTGCAGATGTTACTGATACTTTGCTGTACGACACATTTTCTAGTAAATTTCCCTCTGTCAAAGCAGCAAAAGTTGTCATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTTCGGTTTGGAGATGACAATGAAAGGTCTCAAGCGATGACTGAAATGAATGGTGTACATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACACCCAGAAAATCTTCTGGATATCAGCAACAACGTGCTTCATTAGGTATATTTAAGTGTTTTGGGGCTGCGATATAGTATGCTTAACTTTAAACCACTTCCAAGAGGATTAGGATGTCTTTGGGGTTGGTATGCAGTTCTGGAGTAAATAAAGATAGGCAAGCTTTTGTCTTCTACCAAGCATTTGGTTCAAGACTGGGGTTACGTATCAAAAGAGTTGTTAAAATGAAAACTATAATGCTAACAAATTAGGATATACTGGGTCTTCCTCTCTTACAATTTTGGAGTTTGATTTTATTGTTATCATTAGAAATTTTGTTGAGATTAATGTTTGTGTCAAACATCAATTTTAGACAACAAAAGACTTGTGCTATCTTCTGTAGATCTGTAATAATGTAGACGGAAGTGGTCTCATGTACTCAAATAGGGGTTGCAAGTCTGTTTACTTCCAATGCTGAATCTATATGTTAATCTTGCCTGAAAATTATTTGATTGCTAAGATAGGCGATGATCTAGTGTCAATTTGCATCAGAAAGTTTTGATTTGGGGCCATTTTTATGGTATCCTTCTTGGGGAACTTTACTAGAGCAATCTTGTGAAAATTGAATCATCCTTGAGAAGTAGTAGTTCTGAAATAGTGTCTCCTCTGCATGCCTGTGTTCTTAGGGTTTACTCATGGTTGTAGACTTCCCGACCCATTTTAGACTGCTTAAACACTTGTCTTGCTCTGGTTTTTATAGGAGCATATTCAACAAATGGTGCCTTTAGCCAAGGTTTTCAATCGGAAGGAGATTCTGCAAATACAACTGTGAGTTGCTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACAGCTAGAGATTCCACCCTGTATTATTGGGTTAACCTGAACTTTCCTTTTAGATATTTGTTGGAGGGCTCGATCCTAATGTGAACGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTAGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGGTAAAGTTAGAAATCGGGCTTTCCTAACATATAAACAATGAATTAGTAGCATTTATCTGGTTATTGCTTTTGTTAATCTATTTTTAGTTCTACTAAATTTCAAGGCGTATTCCTTTCTATTTTCCTCTGCAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGGAACTGTAGTTGGCAAGCAAACTGTTCGCCTTTCATGGGGCCGAAATCCAGCAAATAAGCAGGCAAATTACCCTTCTCTCTTAATGTGAAAATTATAACAAAAGAATTATGCAGGCTCTCAATCCATGACTTTCCTGGAGGGCAGGATAGAAATACAACTAAATGAGCTGTTTTTAGAATTCAAATTATGTCTGAGCTATATTTTGGTTGATGAATTTCTGCGTTCGTTCTTTTATCCTTCACAAAAATGTATTTGTCTAACTGAAAACTCATGTGGCCTTGTGTACTTGTTATTTAAAACTTGTCTCATCTGGAACTGAATTCGAAAACACTTAGCCTGGAAATGTTTTGTTTACATTGCTTCTTATCATCTGAAGCGTTTGATTTAGTTGGAAACAAGTTTAACAGTATTTCTTCTTGCATTTGTTGAGGGTTGGCAGTTCAGAGACTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGACACATATATGATGGCTATGGATATGGTCTTCCACCTCAGGATCCAAGTATGTATCATGCAGCTTATGGAGCTTACCCTTTCTATGGAAGCCATCAACAACAAGTAATCTGAATACACGAAGCTCCCATTAATTCTTAAGCCCTTTCCAAGTAGAAACCTGAAATTGCTTCAGCTTCTGGATTTCACTTGGTTTTAGATTTTTCCCCCCTCCATATTAACCATCCTTCCATCTACATAGTGGAACTGAATTTTGATGACCTAAGCTAGTACTATCGTAGAGATATTTATATATTTATTTCATTCAGATGGTTACTGGATTGTGA

mRNA sequence

AGTGATTATAAAGTAAATCAGAAAATAGCATAAAAAAGAGGAATTGGCGGCGGATGGAGCCAGGCGTCGGAAAAGGAAATTGAAACCAAGGGCTGAGATTAAAGTGTAGTCCTTAATCCTAGGGTGTATATAAGCCACCGCGCATTGTCCCAAAAGCAGCCATGGTTTGTAATTGTATGGTACGGCGTGTTGAAGCTCCTAATAAATCATCGTGAAAGCTTAGAGTTAGACCCTAATCCACTCCTCTCTTTCTGCTTCGCTTTCCTTTAAACACTTGGATTCCGATTTGTTTATGTTCTATTTTGTTTTTCTCTCTTTCAATTCAGATTCTTTTACCCTTTTGGTTTAGGGTTTAGGGTGTACATTAAGATTTTCTTTCGTTCTTTTTCTTTTCCGTTTTTGCCTTTTTCTCTCACTCTTCAATACGGAGGAAGATAAGATGCAAAACAACGGTTCTGATTCGCAGCCTCCGGAAACAAATCATCAACGCCACCAACACCCGCCGCAGAAGTCGTGGATGCCACTGCAGTACCGCCCACCGGCGATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATTGCGCCGCCGTTGCCGCCGCCGTATATGCACTATCATTATCATTATCAGCCTCACCATCTCCCTATGCAGCATTCGCAGCCGCTGCAGGGATCTGGTGGCGAAAACAAGACCATTTGGGTTGGTGACTTGCAGCATTGGATGGACGAGACTTACCTCCATAACTGCTTTGGTTCATTCGGCGAGGAGCATATTCAACAAATGGTGCCTTTAGCCAAGATATTTGTTGGAGGGCTCGATCCTAATGTGAACGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTAGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGAGACTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGACACATATATGATGGCTATGGATATGGTCTTCCACCTCAGGATCCAAGTATGTATCATGCAGCTTATGGAGCTTACCCTTTCTATGGAAGCCATCAACAACAAATGGTTACTGGATTGTGA

Coding sequence (CDS)

ATGCAAAACAACGGTTCTGATTCGCAGCCTCCGGAAACAAATCATCAACGCCACCAACACCCGCCGCAGAAGTCGTGGATGCCACTGCAGTACCGCCCACCGGCGATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATTGCGCCGCCGTTGCCGCCGCCGTATATGCACTATCATTATCATTATCAGCCTCACCATCTCCCTATGCAGCATTCGCAGCCGCTGCAGGGATCTGGTGGCGAAAACAAGACCATTTGGGTTGGTGACTTGCAGCATTGGATGGACGAGACTTACCTCCATAACTGCTTTGGTTCATTCGGCGAGGAGCATATTCAACAAATGGTGCCTTTAGCCAAGATATTTGTTGGAGGGCTCGATCCTAATGTGAACGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTAGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGAGACTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGACACATATATGATGGCTATGGATATGGTCTTCCACCTCAGGATCCAAGTATGTATCATGCAGCTTATGGAGCTTACCCTTTCTATGGAAGCCATCAACAACAAATGGTTACTGGATTGTGA

Protein sequence

MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMPHHMMTPQHYIAPPLPPPYMHYHYHYQPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEEHIQQMVPLAKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRDFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFYGSHQQQMVTGL
Homology
[Close]
BLAST of Carg10588-RA vs. NCBI nr
Match: XP_022940926.1 (polyadenylate-binding protein RBP47C-like [Cucurbita moschata] >XP_023523672.1 polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.6 bits (797), Expect = 2.1e-81
Identity = 204/420 (48.57%), Postives = 207/420 (49.29%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60
           MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX
Sbjct: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60

Query: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE---------- 120
           XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE          
Sbjct: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEISSIKIIRNK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QTGLSEGYGFVEFFAHATAEKALQNYSGMCMPDTEQAFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 ---------------------------------------------------EHIQQMVPL 215
                                                              E  Q M  +
Sbjct: 181 FVGDLAADVTDTLLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

[Close]
BLAST of Carg10588-RA vs. NCBI nr
Match: XP_022982257.1 (polyadenylate-binding protein RBP47C-like [Cucurbita maxima])

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 199/420 (47.38%), Postives = 202/420 (48.10%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60
           MQNNGSDSQPPETN QRHQ PPQKSWMPLQYRPPAMVM HXXXXX  YIAPPLXXXXXXX
Sbjct: 1   MQNNGSDSQPPETN-QRHQQPPQKSWMPLQYRPPAMVMPHXXXXXXXYIAPPLXXXXXXX 60

Query: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE---------- 120
           XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE          
Sbjct: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEISSIKIIRNK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QTGLSEGYGFVEFFAHATAEKALQNYSGMCMPDTEQAFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 ---------------------------------------------------EHIQQMVPL 215
                                                              E  Q M  +
Sbjct: 181 FVGDLAADVTDTLLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

[Close]
BLAST of Carg10588-RA vs. NCBI nr
Match: XP_023535397.1 (polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 3.5e-44
Identity = 162/421 (38.48%), Postives = 170/421 (40.38%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQY-RPPAMVMXHXXXXXQHYIAPPLXXXXXX 60
           MQ+NGSDSQP E N QRHQ P  +SWM +QY        X XXXXX        XXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQP--QSWMSMQYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE--------- 120
           XXXXXX         QPLQGSGGENKTIWVGDL HWMDE+YLH CF S GE         
Sbjct: 61  XXXXXXXXXXXXXXXQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISSIKIIRN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLS 180

Query: 181 ----------------------------------------------------EHIQQMV- 215
                                                               E  Q M  
Sbjct: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240

[Close]
BLAST of Carg10588-RA vs. NCBI nr
Match: XP_022936173.1 (polyadenylate-binding protein RBP47C-like [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 160/421 (38.00%), Postives = 167/421 (39.67%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQY-RPPAMVMXHXXXXXQHYIAPPLXXXXXX 60
           MQ+NGSDSQP E N QRHQ P  +SWM +QY        X XXXXX        XXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQP--QSWMSMQYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE--------- 120
           XXXXXX         QPLQGSGGENKTIWVGDL HWMDE+YLHNCF S GE         
Sbjct: 61  XXXXXXXXXXXXXXXQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEIASIKIIRN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLS 180

Query: 181 ----------------------------------------------------EHIQQMVP 215
                                                               E  Q M  
Sbjct: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240

[Close]
BLAST of Carg10588-RA vs. NCBI nr
Match: XP_022976308.1 (polyadenylate-binding protein RBP47C-like [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 158/421 (37.53%), Postives = 170/421 (40.38%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQY-RPPAMVMXHXXXXXQHYIAPPLXXXXXX 60
           MQ+NGSDSQP E N QRHQ P  +SWM +QY        X XXXXX        XXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQP--QSWMSMQYPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGEEHIQQMV-- 120
           XXXXXX         QPLQGSGGENKTIWVGDL HWMDE+YLH CF S GE  + +++  
Sbjct: 61  XXXXXXXXXXXXXXXQPLQGSGGENKTIWVGDLHHWMDESYLHTCFASIGEISLIKIIRN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 KQSGLSEGYGFVEFFAHATAEKALQNYAGVLMPSTEQPFRLNWATFSTGDKRSDNDPDLS 180

Query: 181 ------------------------------------------------------------ 215
                                                                       
Sbjct: 181 IFVGDLAADVTDALLYDTFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMSE 240

[Close]
BLAST of Carg10588-RA vs. TAIR10
Match: AT1G47500.1 (RNA-binding protein 47C')

HSP 1 Score: 120.9 bits (302), Expect = 9.5e-28
Identity = 65/127 (51.18%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPFS++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 368 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 427


HSP 2 Score: 52.4 bits (124), Expect = 4.1e-07
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDLQ+WMDE YL++ F S  E  I
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREI 131

[Close]
BLAST of Carg10588-RA vs. TAIR10
Match: AT1G47490.1 (RNA-binding protein 47C)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-27
Identity = 64/127 (50.39%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPF+++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 366 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 425


HSP 2 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDL HWMDE YL++ F S  E  I
Sbjct: 98  GENKTIWVGDLHHWMDEAYLNSSFASGDEREI 129

[Close]
BLAST of Carg10588-RA vs. TAIR10
Match: AT1G49600.1 (RNA-binding protein 47A)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19
Identity = 55/117 (47.01%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V +EDL QPFS +GE+VSVKIPVGKGCGFVQFANR                
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388

Query: 182 ------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYP 205
                             D GNQWNG Y  G    GY  G   QD +MY  A  A P
Sbjct: 389 KNTVRLSWGRSPNKQWRSDSGNQWNGGYSRG---QGYNNGYANQDSNMYATAAAAVP 442


HSP 2 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 85  KTIWVGDLQHWMDETYLHNCFGSFGE 111
           KT+WVGDL HWMDETYLH CF    E
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNE 144

[Close]
BLAST of Carg10588-RA vs. TAIR10
Match: AT3G19130.1 (RNA-binding protein 47B)

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-18
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 120 AKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 166
           A IFVGG+DP+V DEDLRQPFSQ+GE+VSVKIPVGKGCGFVQFA+R
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADR 366


HSP 2 Score: 58.9 bits (141), Expect = 4.4e-09
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 78  QGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           +GSG + KT+WVGDL HWMDETYLH+CF   GE
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGE 133

[Close]
BLAST of Carg10588-RA vs. TAIR10
Match: AT5G54900.1 (RNA-binding protein 45A)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 52/127 (40.94%), Postives = 65/127 (51.18%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD NV D++L+  F Q+GE++ VKIP GK CGFVQ+AN+                
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321

Query: 182 ------DFGN---------QWNGAYYGGH---IYDGYGYGL--PPQDPSMYHAAYGAYPF 213
                  +G          QWNG  Y G+      GYGY    P QDP+ Y   YG Y  
Sbjct: 322 GQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGYGYAAQPPTQDPNAY---YGGYTG 381


HSP 2 Score: 44.7 bits (104), Expect = 8.6e-05
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 0 

Query: 79  GSGGENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           GS  + K++W+GDLQ WMDE Y+ + F   GE
Sbjct: 54  GSASDVKSLWIGDLQQWMDENYIMSVFAQSGE 85

[Close]
BLAST of Carg10588-RA vs. Swiss-Prot
Match: sp|Q9SX80|R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 65/127 (51.18%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPFS++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 368 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 427


HSP 2 Score: 52.4 bits (124), Expect = 7.5e-06
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDLQ+WMDE YL++ F S  E  I
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREI 131

[Close]
BLAST of Carg10588-RA vs. Swiss-Prot
Match: sp|Q9SX79|RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-26
Identity = 64/127 (50.39%), Postives = 73/127 (57.48%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V DEDL+QPF+++GEIVSVKIPVGKGCGFVQF NR                
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYPFY 214
                               +GNQW   YYGG  Y+GYGY +P  DP MY AA   YP Y
Sbjct: 366 KQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAA-PYYPMY 425


HSP 2 Score: 53.5 bits (127), Expect = 3.3e-06
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0 

Query: 82  GENKTIWVGDLQHWMDETYLHNCFGSFGEEHI 114
           GENKTIWVGDL HWMDE YL++ F S  E  I
Sbjct: 98  GENKTIWVGDLHHWMDEAYLNSSFASGDEREI 129

[Close]
BLAST of Carg10588-RA vs. Swiss-Prot
Match: sp|Q9LEB3|RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 61/129 (47.29%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD  V DE+LRQ F+Q+GE+VSVKIP GKGCGFVQF++R                
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIG 356

Query: 182 -------------------DFGNQWNGAYYGGHIYDGYGYGLPP-QDPSMY--HAAYGAY 212
                              D G+QWNG Y G   Y GYGYG    QD  MY   AAYGA 
Sbjct: 357 KQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGAS 416


HSP 2 Score: 55.5 bits (132), Expect = 8.8e-07
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 83  ENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           +NKTIW+GDLQ WMDE+YLH+CF   GE
Sbjct: 82  DNKTIWIGDLQQWMDESYLHSCFSQAGE 109

[Close]
BLAST of Carg10588-RA vs. Swiss-Prot
Match: sp|F4I3B3|RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-18
Identity = 55/117 (47.01%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 122 IFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR---------------- 181
           IFVGGLD +V +EDL QPFS +GE+VSVKIPVGKGCGFVQFANR                
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388

Query: 182 ------------------DFGNQWNGAYYGGHIYDGYGYGLPPQDPSMYHAAYGAYP 205
                             D GNQWNG Y  G    GY  G   QD +MY  A  A P
Sbjct: 389 KNTVRLSWGRSPNKQWRSDSGNQWNGGYSRG---QGYNNGYANQDSNMYATAAAAVP 442


HSP 2 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 85  KTIWVGDLQHWMDETYLHNCFGSFGE 111
           KT+WVGDL HWMDETYLH CF    E
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNE 144

[Close]
BLAST of Carg10588-RA vs. Swiss-Prot
Match: sp|Q0WW84|RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.4e-17
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 120 AKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 166
           A IFVGG+DP+V DEDLRQPFSQ+GE+VSVKIPVGKGCGFVQFA+R
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADR 366


HSP 2 Score: 58.9 bits (141), Expect = 8.0e-08
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 78  QGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE 111
           +GSG + KT+WVGDL HWMDETYLH+CF   GE
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGE 133

[Close]
BLAST of Carg10588-RA vs. TrEMBL
Match: tr|A0A1U8PBR6|A0A1U8PBR6_GOSHI (polyadenylate-binding protein RBP47C-like OS=Gossypium hirsutum OX=3635 GN=LOC107957552 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.4e-43
Identity = 137/421 (32.54%), Postives = 154/421 (36.58%), Query Frame = 0 

Query: 2   QNNGSDSQPPETNHQRHQHPP--QKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXX 61
           QN+G DSQP +  +QR Q PP  Q  W+ +QY   AMVM H     QH++APPL      
Sbjct: 3   QNSGLDSQPSQEQNQRQQQPPRSQPQWVAMQYPAAAMVMQHQMMQPQHFVAPPLPPQHYM 62

Query: 62  XXXXXXPHHLPMQ-HSQPLQGSG-GENKTIWVGDLQHWMDETYLHNCFGSFGE------- 121
                  HHL +  H+Q   G G GENKT+WVGDL HWMDE YLH+CF S GE       
Sbjct: 63  PY-----HHLHLNGHAQQGSGGGSGENKTVWVGDLYHWMDENYLHSCFASTGEIASIKVI 122

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 123 RNKQTGLSEGYGFVEFFSHATAEKVLQSYSSVLMPNTDQPFRLNWATLSTGEKRSENGPD 182

Query: 182 ------------------EHIQQMVPLAK------------------------------- 214
                             E      P  K                               
Sbjct: 183 LSIFVGDLGADVTDSLLHETFASKYPSVKTAKVVIDANTGRSKGYGFVRFGDETERSQAM 242

[Close]
BLAST of Carg10588-RA vs. TrEMBL
Match: tr|A0A2P5VVE4|A0A2P5VVE4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37926 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 138/422 (32.70%), Postives = 155/422 (36.73%), Query Frame = 0 

Query: 2   QNNGSDSQPPETNHQRHQHPP--QKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXX 61
           QN+G DSQP +  +QR Q PP  Q  W+ +QY   AMVM H     QH++APPL      
Sbjct: 3   QNSGLDSQPSQEQNQRQQQPPRSQPQWVAMQYPAAAMVMQHQMMQPQHFVAPPLPPQHYM 62

Query: 62  XXXXXXPHHLPMQ-HSQPLQGSG-GENKTIWVGDLQHWMDETYLHNCFGSFGE------- 121
                  HHL +  H+Q   G G GENKT+WVGDL HWMDE YLH+CF S GE       
Sbjct: 63  PY-----HHLHLNGHAQQGSGGGSGENKTVWVGDLYHWMDENYLHSCFASTGEIASIKVI 122

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 123 RNKQTGLSEGYGFVEFFSHATAEKVLQSYSSVLMPNTDQPFRLNWATLSTGEKRSENGPD 182

Query: 182 ------------------EHIQQMVPLAK------------------------------- 214
                             E      P  K                               
Sbjct: 183 LSIFVGDLGADVTDSLLHETFASKYPSVKTAKVVIDANTGRSKGYGFVRFGDETERSQAM 242

[Close]
BLAST of Carg10588-RA vs. TrEMBL
Match: tr|A0A2R6R3E5|A0A2R6R3E5_ACTCH (Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11799 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.3e-42
Identity = 102/197 (51.78%), Postives = 113/197 (57.36%), Query Frame = 0 

Query: 80  SGGENKTIWVGDLQHWMDETYLHNCFGSFGE----EHIQQM------------------- 139
           S GENKTIW+GDLQ+WMDE YLH+CF S GE     +I +M                   
Sbjct: 74  SNGENKTIWIGDLQNWMDEDYLHSCFASTGEIYDLGYIWRMSRAGGYVSSGASAQGSQSD 133

Query: 140 --VPLAKIFVGGLDPNVNDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR--------- 199
                  IFVGGL PNV DEDLRQPFSQYGEIVSVKIPV +GCGFVQFANR         
Sbjct: 134 GDYTNTTIFVGGLGPNVKDEDLRQPFSQYGEIVSVKIPVRRGCGFVQFANRNNAEEALQK 193

Query: 200 -------------------------DFGNQWNGAYYGGHIYDGYGYGLP-PQDPSMY--- 214
                                    DFGN  +GAYYGG IYDG+GY +P P DPSMY   
Sbjct: 194 LNGTTIADQTVRLSWGRNPANKQRADFGNSLSGAYYGGQIYDGFGYAVPQPHDPSMYAAA 253

[Close]
BLAST of Carg10588-RA vs. TrEMBL
Match: tr|A0A1S3BUU0|A0A1S3BUU0_CUCME (polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.9e-41
Identity = 155/421 (36.82%), Postives = 165/421 (39.19%), Query Frame = 0 

Query: 1   MQNNGSDSQPPETNHQRHQHPPQKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXXX 60
           MQ+NGSDSQP E N QRHQ  PQ               X XXXXX        XXXXXXX
Sbjct: 1   MQSNGSDSQPQEPN-QRHQQQPQPWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXPHHLPMQHSQPLQGSGGENKTIWVGDLQHWMDETYLHNCFGSFGE---------- 120
           XXXXX   LP+QHSQPL+GSG ENKTIWVGDL HWMDE+YLH+CF S GE          
Sbjct: 61  XXXXXXXXLPIQHSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNK 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 QTGLSEGYGFVEFLSHATAEKVLQNYSGMFMPSTEQTFRLNWATFSTGDKRSDNDPDLSI 180

Query: 181 ---------------------------------------------------EHIQQMVPL 214
                                                              E  Q M  +
Sbjct: 181 FVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEM 240

[Close]
BLAST of Carg10588-RA vs. TrEMBL
Match: tr|A0A2P5RUB1|A0A2P5RUB1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD12639 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 134/421 (31.83%), Postives = 151/421 (35.87%), Query Frame = 0 

Query: 2   QNNGSDSQPPETNHQRHQHPP--QKSWMPLQYRPPAMVMXHXXXXXQHYIAPPLXXXXXX 61
           QN+G DSQP +  +QR Q PP  Q  W+ +QY   AMVM H     QH++A PL      
Sbjct: 3   QNSGLDSQPSQEQNQRQQQPPRSQPQWVAMQYPAAAMVMQHQMMQPQHFVASPLPPQHYM 62

Query: 62  XXXXXXPHHLPMQ-HSQPLQGSG-GENKTIWVGDLQHWMDETYLHNCFGSFGE------- 121
                  HHL +  H+Q   G G GENKT+WVGDL HWMDE YLH+CF S GE       
Sbjct: 63  PY-----HHLHLNGHAQQGSGGGSGENKTVWVGDLYHWMDENYLHSCFASTGEIASIKVI 122

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 123 RNKQTGLSEGYGFVEFFSHATAEKVLQSYSSILMPNTDQPFRLNWATLSTGEKRSENGPD 182

Query: 182 ------------------EHIQQMVPLAK------------------------------- 214
                             E      P  K                               
Sbjct: 183 LSIFVGDLGADVTDSLLHETFASKYPSVKAARVVIVANTGRSKGYGFVRFGDETERSQAM 242

The following BLAST results are available for this feature:
BLAST of Carg10588-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940926.12.1e-8148.57polyadenylate-binding protein RBP47C-like [Cucurbita moschata] >XP_023523672.1 p... [more]
XP_022982257.11.5e-7647.38polyadenylate-binding protein RBP47C-like [Cucurbita maxima][more]
XP_023535397.13.5e-4438.48polyadenylate-binding protein RBP47C-like [Cucurbita pepo subsp. pepo][more]
XP_022936173.11.0e-4338.00polyadenylate-binding protein RBP47C-like [Cucurbita moschata][more]
XP_022976308.11.0e-4337.53polyadenylate-binding protein RBP47C-like [Cucurbita maxima][more]
BLAST of Carg10588-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT1G47500.19.5e-2851.18RNA-binding protein 47C'[more]
AT1G47490.12.1e-2750.39RNA-binding protein 47C[more]
AT1G49600.11.6e-1947.01RNA-binding protein 47A[more]
AT3G19130.15.2e-1884.78RNA-binding protein 47B[more]
AT5G54900.11.1e-1540.94RNA-binding protein 45A[more]
BLAST of Carg10588-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SX80|R47CP_ARATH1.7e-2651.18Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'... [more]
sp|Q9SX79|RB47C_ARATH3.8e-2650.39Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C P... [more]
sp|Q9LEB3|RBP47_NICPL1.2e-1947.29Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4... [more]
sp|F4I3B3|RB47A_ARATH2.9e-1847.01Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P... [more]
sp|Q0WW84|RB47B_ARATH9.4e-1784.78Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P... [more]
BLAST of Carg10588-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1U8PBR6|A0A1U8PBR6_GOSHI7.4e-4332.54polyadenylate-binding protein RBP47C-like OS=Gossypium hirsutum OX=3635 GN=LOC10... [more]
tr|A0A2P5VVE4|A0A2P5VVE4_GOSBA2.8e-4232.70Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37926 PE=4 SV... [more]
tr|A0A2R6R3E5|A0A2R6R3E5_ACTCH6.3e-4251.78Polyadenylate-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|A0A1S3BUU0|A0A1S3BUU0_CUCME6.9e-4136.82polyadenylate-binding protein RBP47-like OS=Cucumis melo OX=3656 GN=LOC103493523... [more]
tr|A0A2P5RUB1|A0A2P5RUB1_GOSBA2.0e-4031.83Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD12639 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg10588Carg10588gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10588-RA.CDS.5Carg10588-RA.CDS.5CDS
Carg10588-RA.CDS.4Carg10588-RA.CDS.4CDS
Carg10588-RA.CDS.3Carg10588-RA.CDS.3CDS
Carg10588-RA.CDS.2Carg10588-RA.CDS.2CDS
Carg10588-RA.CDS.1Carg10588-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10588-RA.five_prime_UTR.1Carg10588-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg10588-RA.exon.5Carg10588-RA.exon.5exon
Carg10588-RA.exon.4Carg10588-RA.exon.4exon
Carg10588-RA.exon.3Carg10588-RA.exon.3exon
Carg10588-RA.exon.2Carg10588-RA.exon.2exon
Carg10588-RA.exon.1Carg10588-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg10588-RACarg10588-RA-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 121..191
e-value: 6.6E-9
score: 45.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 122..166
e-value: 9.7E-13
score: 47.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 120..179
score: 13.089
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 112..167
e-value: 5.8E-15
score: 56.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 166..213
NoneNo IPR availablePANTHERPTHR43955:SF5POLYADENYLATE-BINDING PROTEIN RBP47C-RELATEDcoord: 7..110
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 121..166
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 7..110
NoneNo IPR availablePANTHERPTHR43955:SF5POLYADENYLATE-BINDING PROTEIN RBP47C-RELATEDcoord: 166..213
NoneNo IPR availablePANTHERPTHR43955:SF5POLYADENYLATE-BINDING PROTEIN RBP47C-RELATEDcoord: 121..166
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 113..166
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 55..110