Carg10307 (gene) Silver-seed gourd

Overview
NameCarg10307
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description31 kDa ribonucleoprotein, chloroplastic
LocationCucurbita_argyrosperma_scaffold_047 : 335745 .. 337358 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTCTCTTCCCCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTATGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCAGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGGGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTGAGATTCCGGAGTTCGGTGAATTGAATGTTTTTTTGTTTATGGATTTAGGGTTTAAGCTCTTAATCTGGTGCTTGTGAGGACTGTAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTCGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTTTGATCTTCAATATCTTCATAAATTCAAACCTTATTTGATTATCATGAAACCTTCTCTTCATTCCTACTTTTCAGTGGAAAATTCAGAAGAGTTTAAGTGAACTGTTTTTCATGAATCTTAGTTAGGGTCTGTATGGGTCTAGATTGATTTGTTTGAGTGGCTCTGTCTCTTTCCTGGCTAAGGCTGATCTTGTTCTCGGGGTTTGCCATTGATTTGTTTTGAGCTCAAAGTTCCTATAAAGGAAGGCCATGTCCTTGTGTAAACCTATAGTCTCGGCTGTTACTAGAGTATCTCAAACATATCAATTGGTTCTTTTTTTCCTTTGGTTGAGCTGCCCCTTCATTGTTGCTTGCTTCTTGAAATTTTAATTGATTTTGTGGGTTTATAGGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTATACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTATGAAAATTGCAGTTTCTTTACGGGAATCAGTTTAGAATCCGAACTTGATAACATAACACCCAGTTACTTGAATCTTGTCAACTCCTAACAAAACATTCTGAAATTTGAAATATGCAGAGTGTAGATGGAAGGGCAATCAGAGTGAATGTTGCAGAGGAAAAACCAAGGCGCAATTTCTGA

mRNA sequence

ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTCTCTTCCCCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTATGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCAGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGGGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTCGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTATACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTGTAGATGGAAGGGCAATCAGAGTGAATGTTGCAGAGGAAAAACCAAGGCGCAATTTCTGA

Coding sequence (CDS)

ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTCTCTTCCCCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTCATCGCTAGTTGCCTATGTAGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCAGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGGGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTTGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTCGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTATACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTGTAGATGGAAGGGCAATCAGAGTGAATGTTGCAGAGGAAAAACCAAGGCGCAATTTCTGA

Protein sequence

MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Homology
[Close]
BLAST of Carg10307 vs. NCBI nr
Match: XP_023515898.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 575.1 bits (1481), Expect = 1.6e-160
Identity = 319/335 (95.22%), Postives = 319/335 (95.22%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLF CRPPHSF             LSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFXXXXXXXXXXXXXLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHLSSLVA VAQSSEWGQEDDTITIDPKL GDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLGGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]
BLAST of Carg10307 vs. NCBI nr
Match: XP_022921514.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 574.3 bits (1479), Expect = 2.7e-160
Identity = 319/335 (95.22%), Postives = 319/335 (95.22%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLF CRPPHSF             LSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFXXXXXXXXXXXXXLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHLSSLVA VAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGR LVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRPLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]
BLAST of Carg10307 vs. NCBI nr
Match: XP_022987125.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 574.3 bits (1479), Expect = 2.7e-160
Identity = 319/335 (95.22%), Postives = 319/335 (95.22%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MASSSATSILKPLSKADSCLLSLPSLF CRPPHSF             LSSSHCSSLFSS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFXXXXXXXXXXXXXLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120
           SKKKTHL SLVA VAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW
Sbjct: 61  SKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180
           EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA
Sbjct: 121 EXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240
           GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]
BLAST of Carg10307 vs. NCBI nr
Match: XP_022134798.1 (28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 464.9 bits (1195), Expect = 2.3e-127
Identity = 268/338 (79.29%), Postives = 291/338 (86.09%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60
           MAS+SATSILKPLSKADSCLLSLPS+F CRPPHSFLSFPSK     FHLSSS  SS FS 
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIR--FHLSSSSHSSPFSL 60

Query: 61  SKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGD--EDGEEGPHWENQELSENESRIS 120
           SKKK H SSLV++VAQ+S+W QEDDTITIDPKL GD  E+ E+GPHWENQELSE ESRIS
Sbjct: 61  SKKKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRIS 120

Query: 121 DWE-XXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 180
           DWE XXXXXXXXXXXXXXXXX                  AKL+VGNL YDVDSQKLAM+F
Sbjct: 121 DWEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLFVGNLPYDVDSQKLAMIF 180

Query: 181 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 240
            KAGTVEIAEVIY+R++D+SRGFGFVTMS+VEEAEKAVDTFNRYE  GR L VNKAA RG
Sbjct: 181 GKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPRG 240

Query: 241 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           +RPER PRTFQ +FRIYVGNL W+VD+ARLEQVFSEHGKVV+ARVLYDRD+GRSRGFGFV
Sbjct: 241 ARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           TMADETGMNDAIAALDGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]
BLAST of Carg10307 vs. NCBI nr
Match: XP_004138078.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 439.1 bits (1128), Expect = 1.3e-119
Identity = 260/338 (76.92%), Postives = 279/338 (82.54%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHC-SSLFS 60
           MASSSATS+ KPLSK DSC LSLPSLF  RPPH            PFHLSSS   SS FS
Sbjct: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPH--XXXXXXXXXIPFHLSSSSSYSSGFS 60

Query: 61  SSKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDG--EEGPHWENQELSENESRI 120
            SKKK HL S    VAQ+S+W QEDDTITIDPKL  DE+G  E GPHWEN+ELSE ESRI
Sbjct: 61  PSKKKPHLPS----VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRI 120

Query: 121 SDWEXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 180
           S   XXXXXXXXXXXXXXXXX         GP EEPNEDAKL+VGNL YD+DS+KLAMLF
Sbjct: 121 S--XXXXXXXXXXXXXXXXXXXXXXXXXXXGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 180

Query: 181 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 240
           EKAGTVEIAEVIY+R++DRSRGFGFVTMS+VEEAEKAVDTFNRY+  GR L VNKAA RG
Sbjct: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRG 240

Query: 241 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           SR ER+PR FQP FRIYVGNL W+VD+ RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFV
Sbjct: 241 SRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           TMADETGMNDAIAALDGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 330

[Close]
BLAST of Carg10307 vs. TAIR10
Match: AT4G24770.1 (31-kDa RNA binding protein)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-78
Identity = 192/338 (56.80%), Postives = 235/338 (69.53%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKAD---SCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSL 60
           MASS  TS LKPL+ AD   S + S PS+          S      T   +L  S  S +
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSF-SRV 60

Query: 61  FSSSKKKTHL--SSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENES 120
             S K KTHL  S  V++VAQ+S+W +E           G E        EN   S++  
Sbjct: 61  SLSLKTKTHLKKSPFVSFVAQTSDWAEE-----------GGEGSVAVEETENSLESQDXX 120

Query: 121 RISDWEXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAM 180
                 XXXXXXXXXXXXXXXXX             EP+E+AKL+VGNL+YDV+SQ LAM
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFPEPSEEAKLFVGNLAYDVNSQALAM 180

Query: 181 LFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAA 240
           LFE+AGTVEIAEVIY+R++D+SRGFGFVTMSSV+EAE AV+ FNRY+  GR L VNKAA 
Sbjct: 181 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 240

Query: 241 RGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFG 300
           RGSRPER PR ++PAFR+YVGNL W+VD+ RLEQ+FSEHGKVV+ARV+YDR++GRSRGFG
Sbjct: 241 RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFG 300

Query: 301 FVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
           FVTM+D   +N+AI+ALDGQ+++GRAIRVNVAEE+P R
Sbjct: 301 FVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]
BLAST of Carg10307 vs. TAIR10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B)

HSP 1 Score: 268.5 bits (685), Expect = 5.7e-72
Identity = 167/336 (49.70%), Postives = 213/336 (63.39%), Query Frame = 0 

Query: 1   MASSSATSILKPL---SKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSL 60
           M SS  T  LK L   + + S L  +PS+F      S   F    ++ P +L      +L
Sbjct: 1   MTSSVLTPSLKLLAMTNSSSSTLFCIPSIFNISSSESH-RFNFSLSSRPVNL------TL 60

Query: 61  FSSSKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRI 120
              SK   + S +V +V+Q+S W +E++           EDG  G       ++ +ES  
Sbjct: 61  SLKSKTLRNSSPVVTFVSQTSNWAEEEE----------GEDGSIG----GTSVTVDES-- 120

Query: 121 SDWEXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 180
                                      E+     EP E+AKL+VGNL YDVDSQ LAMLF
Sbjct: 121 ------------------------FESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLF 180

Query: 181 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 240
           E+AGTVEI+EVIY+R +D+SRGFGFVTMS+VEEAEKAV+ FN +E  GR L VN+AA RG
Sbjct: 181 EQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRG 240

Query: 241 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           SRPERQPR +  AFRIYVGNL W+VDS RLE++FSEHGKVVDARV+ DR++GRSRGFGFV
Sbjct: 241 SRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFV 289

Query: 301 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
            M++E  +N AIAALDGQ+++GRAI+VNVAEE+ RR
Sbjct: 301 QMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]
BLAST of Carg10307 vs. TAIR10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-47
Identity = 103/197 (52.28%), Postives = 124/197 (62.94%), Query Frame = 0 

Query: 156 DAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAV 215
           D KL+VGNL ++VDS +LA LFE AG VE+ EVIYD+ + RSRGFGFVTMSSV E E A 
Sbjct: 90  DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149

Query: 216 DTFNRYEFLGRTLVVNKAAARGSRPE---RQPRT----------------FQPAFRIYVG 275
             FN YE  GR L VN       R +   R PR+                     R+YVG
Sbjct: 150 QQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSXXXXXXXXXXXXXXXXXRVYVG 209

Query: 276 NLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQS 334
           NL+W VD   LE +FSE GKVV+ARV+YDRDSGRS+GFGFVT      + +AI +LDG  
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269

[Close]
BLAST of Carg10307 vs. TAIR10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-38
Identity = 104/276 (37.68%), Postives = 132/276 (47.83%), Query Frame = 0 

Query: 145 EEEGPLEEP--NEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGF 204
           ++  P+E    + D KL+VGNLS++VDS +LA LFE AG VE+ EVIYD+ + RSRGFGF
Sbjct: 85  DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144

Query: 205 VTMSSVEEAEKAVDTFNRY---------------------EFLGRTLVVNKAAARGSRPE 264
           VTMS+  E E A   FN Y                     EF GR L VN       R E
Sbjct: 145 VTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKREE 204

Query: 265 ---RQPRT---------------------------------------------------- 324
              R PR+                                                    
Sbjct: 205 SFSRGPRSGGYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264

Query: 325 ---------FQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 334
                         R+YVGNL+W VD   LE +F+E GKVV+ARV+YDRDSGRS+GFGFV
Sbjct: 265 XXXXXXXXXXXXXXRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 324

[Close]
BLAST of Carg10307 vs. TAIR10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-38
Identity = 79/175 (45.14%), Postives = 113/175 (64.57%), Query Frame = 0 

Query: 156 DAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAV 215
           + KLY GNL Y+VDS  LA + +     E+ EV+Y+R + +SRGF FVTMS+VE+    +
Sbjct: 84  NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143

Query: 216 DTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHG 275
           D  +  E+LGR L VN   A   +P ++P   +   +++VGNL+W V S  L   F E G
Sbjct: 144 DNLDGTEYLGRALKVN--FADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECG 203

Query: 276 KVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEK 331
            VV ARV++D D+GRSRG+GFV  + +  M  A+ +LDG  ++GRAIRVN+A+ K
Sbjct: 204 DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256

[Close]
BLAST of Carg10307 vs. Swiss-Prot
Match: sp|Q04836|CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.5e-77
Identity = 192/338 (56.80%), Postives = 235/338 (69.53%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKAD---SCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSL 60
           MASS  TS LKPL+ AD   S + S PS+          S      T   +L  S  S +
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSF-SRV 60

Query: 61  FSSSKKKTHL--SSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENES 120
             S K KTHL  S  V++VAQ+S+W +E           G E        EN   S++  
Sbjct: 61  SLSLKTKTHLKKSPFVSFVAQTSDWAEE-----------GGEGSVAVEETENSLESQDXX 120

Query: 121 RISDWEXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAM 180
                 XXXXXXXXXXXXXXXXX             EP+E+AKL+VGNL+YDV+SQ LAM
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFPEPSEEAKLFVGNLAYDVNSQALAM 180

Query: 181 LFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAA 240
           LFE+AGTVEIAEVIY+R++D+SRGFGFVTMSSV+EAE AV+ FNRY+  GR L VNKAA 
Sbjct: 181 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 240

Query: 241 RGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFG 300
           RGSRPER PR ++PAFR+YVGNL W+VD+ RLEQ+FSEHGKVV+ARV+YDR++GRSRGFG
Sbjct: 241 RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFG 300

Query: 301 FVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
           FVTM+D   +N+AI+ALDGQ+++GRAIRVNVAEE+P R
Sbjct: 301 FVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]
BLAST of Carg10307 vs. Swiss-Prot
Match: sp|P19682|ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.1e-75
Identity = 164/319 (51.41%), Postives = 213/319 (66.77%), Query Frame = 0 

Query: 17  DSCLLSLPSLFPCRPPHSFLSFPSKFT-TAPFHLSSSHCSSLFSSSKKKTHLSSLVAYVA 76
           + CL+SLP  F      S  S+P   T   P  LSSS   +L S +K+ T   + V+ ++
Sbjct: 4   NGCLISLPPFF--TTTKSISSYPFLSTQLKPISLSSS-LPTLLSLNKRTTQFPTFVSVLS 63

Query: 77  QSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDWEXXXXXXXXXXXXXX 136
                 ++D+T+ +D +    E G + P +                              
Sbjct: 64  ------EDDNTLVLDDQ----EQGGDFPSF------------------------------ 123

Query: 137 XXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSD 196
              V E G+ EE   +EP+EDAKL+VGNL YD+DS+ LA LF++AG VEIAEVIY+R++D
Sbjct: 124 ---VGEAGETEE--YQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETD 183

Query: 197 RSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYV 256
           RSRGFGFVTMS+VEEA+KAV+ +++Y+  GR L VNKAA RGSRPER PRTFQP +RIYV
Sbjct: 184 RSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYV 243

Query: 257 GNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ 316
           GN+ W++D ARLEQVFSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AIA LDGQ
Sbjct: 244 GNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQ 274

Query: 317 SVDGRAIRVNVAEEKPRRN 335
           ++DGR IRVN AEE+PRRN
Sbjct: 304 TLDGRTIRVNAAEERPRRN 274

[Close]
BLAST of Carg10307 vs. Swiss-Prot
Match: sp|P19683|ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 6.8e-75
Identity = 174/344 (50.58%), Postives = 220/344 (63.95%), Query Frame = 0 

Query: 3   SSSATSILKPLSKA-DSCLLSLPSLFPCRPPHSFLSFPSKFTTAP----FHLSSSHCSSL 62
           S +   I+KP S A +SCL+SLP LF         ++P    T       HLS ++ S  
Sbjct: 2   SCATKPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTY-SPC 61

Query: 63  FSSSKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRI 122
             S KKKT +S+L           +E++T+ +D +  G E G+      + E +E E  +
Sbjct: 62  ILSPKKKTSVSAL----------QEEENTLILDGQ--GQESGDLFNFEPSGEETEEEGFV 121

Query: 123 SDWEXXXXXXXXXXXXXXXXXVLELGDEEE-------GPLEEPNEDAKLYVGNLSYDVDS 182
                                V + G+ +E           EP EDAKL+VGNL YDVDS
Sbjct: 122 E-------------------AVGDAGESDEVXXXXXXXXXXEPPEDAKLFVGNLPYDVDS 181

Query: 183 QKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVV 242
           + LA LFE+AG VEIAEVIY+R +D+SRGFGFVTMS+VEEAEKAV+ +NRY+  GR L V
Sbjct: 182 EGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV 241

Query: 243 NKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGR 302
           NKAA RG RPER PRTF+ ++RIYVGN+ W +D ARLEQ+FSEHGKVV ARV+YDR++GR
Sbjct: 242 NKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGR 301

Query: 303 SRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRN 335
           SRGFGFVTMA E  M+DAIA LDGQS+DGR IRVNVAE++ RRN
Sbjct: 302 SRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313

[Close]
BLAST of Carg10307 vs. Swiss-Prot
Match: sp|P28644|ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.9e-72
Identity = 153/263 (58.17%), Postives = 188/263 (71.48%), Query Frame = 0 

Query: 74  VAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDWEXXXXXXXXXXXX 133
           VAQ+SEW QE  T  +   L G+ D E    W       +E+++SD              
Sbjct: 2   VAQTSEWEQEGSTNAV---LEGESDPEGAVSW------GSETQVSD-------------- 61

Query: 134 XXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQ 193
                  E G E      EP E+AKL+VGNL YDVDS+KLA +F+ AG VEIAEVIY+R+
Sbjct: 62  -------EGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRE 121

Query: 194 SDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPR-TFQPAFR 253
           +DRSRGFGFVTMS+VEEAEKAV+  N Y+  GR L VNKAA RGS PER PR  F+P+ R
Sbjct: 122 TDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCR 181

Query: 254 IYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 313
           +YVGNL W+VD++RLEQ+FSEHGKVV ARV+ DR++GRSRGFGFVTM+ E+ +NDAIAAL
Sbjct: 182 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 233

Query: 314 DGQSVDGRAIRVNVAEEKPRRNF 336
           DGQ++DGRA+RVNVAEE+PRR F
Sbjct: 242 DGQTLDGRAVRVNVAEERPRRAF 233

[Close]
BLAST of Carg10307 vs. Swiss-Prot
Match: sp|Q9FGS0|CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.0e-70
Identity = 167/336 (49.70%), Postives = 213/336 (63.39%), Query Frame = 0 

Query: 1   MASSSATSILKPL---SKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSL 60
           M SS  T  LK L   + + S L  +PS+F      S   F    ++ P +L      +L
Sbjct: 1   MTSSVLTPSLKLLAMTNSSSSTLFCIPSIFNISSSESH-RFNFSLSSRPVNL------TL 60

Query: 61  FSSSKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRI 120
              SK   + S +V +V+Q+S W +E++           EDG  G       ++ +ES  
Sbjct: 61  SLKSKTLRNSSPVVTFVSQTSNWAEEEE----------GEDGSIG----GTSVTVDES-- 120

Query: 121 SDWEXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 180
                                      E+     EP E+AKL+VGNL YDVDSQ LAMLF
Sbjct: 121 ------------------------FESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLF 180

Query: 181 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 240
           E+AGTVEI+EVIY+R +D+SRGFGFVTMS+VEEAEKAV+ FN +E  GR L VN+AA RG
Sbjct: 181 EQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRG 240

Query: 241 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           SRPERQPR +  AFRIYVGNL W+VDS RLE++FSEHGKVVDARV+ DR++GRSRGFGFV
Sbjct: 241 SRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFV 289

Query: 301 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRR 334
            M++E  +N AIAALDGQ+++GRAI+VNVAEE+ RR
Sbjct: 301 QMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]
BLAST of Carg10307 vs. TrEMBL
Match: tr|A0A0A0LNS8|A0A0A0LNS8_CUCSA (Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 8.8e-120
Identity = 260/338 (76.92%), Postives = 279/338 (82.54%), Query Frame = 0 

Query: 1   MASSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHC-SSLFS 60
           MASSSATS+ KPLSK DSC LSLPSLF  RPPH            PFHLSSS   SS FS
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPH--XXXXXXXXXIPFHLSSSSSYSSGFS 133

Query: 61  SSKKKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDG--EEGPHWENQELSENESRI 120
            SKKK HL S    VAQ+S+W QEDDTITIDPKL  DE+G  E GPHWEN+ELSE ESRI
Sbjct: 134 PSKKKPHLPS----VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRI 193

Query: 121 SDWEXXXXXXXXXXXXXXXXXVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLF 180
           S   XXXXXXXXXXXXXXXXX         GP EEPNEDAKL+VGNL YD+DS+KLAMLF
Sbjct: 194 S--XXXXXXXXXXXXXXXXXXXXXXXXXXXGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 253

Query: 181 EKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARG 240
           EKAGTVEIAEVIY+R++DRSRGFGFVTMS+VEEAEKAVDTFNRY+  GR L VNKAA RG
Sbjct: 254 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRG 313

Query: 241 SRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           SR ER+PR FQP FRIYVGNL W+VD+ RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFV
Sbjct: 314 SRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV 373

Query: 301 TMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           TMADETGMNDAIAALDGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 374 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 403

[Close]
BLAST of Carg10307 vs. TrEMBL
Match: tr|A0A1S3CLL5|A0A1S3CLL5_CUCME (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502359 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.4e-101
Identity = 209/251 (83.27%), Postives = 224/251 (89.24%), Query Frame = 0 

Query: 87  ITIDPKLSGDEDGEE--GPHWENQELSENESRISDWEXXXXXXXXXXXXXXXXXVLELGD 146
           +TIDPKL  DED EE  GPHWEN+ELSE ESRISDWE  XXXXXXXXXXXXXXX      
Sbjct: 1   MTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWE--XXXXXXXXXXXXXXXXXXXXX 60

Query: 147 EEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVT 206
              GP EEPNEDAKL+VGNL YD+DS+KLAMLFEKAGTVEIAEVIY+R++DRSRGFGFVT
Sbjct: 61  XXXGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVT 120

Query: 207 MSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDS 266
           MS+VEEAEKAVDTFNRYE  GR L VNKAA RG+R ERQPR FQPAFRIYVGNL W+VD+
Sbjct: 121 MSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPRPFQPAFRIYVGNLPWDVDN 180

Query: 267 ARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRV 326
           ARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQS++GRAIRV
Sbjct: 181 ARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRV 240

Query: 327 NVAEEKPRRNF 336
           NVAEE+PRRNF
Sbjct: 241 NVAEERPRRNF 249

[Close]
BLAST of Carg10307 vs. TrEMBL
Match: tr|A0A2C9VS90|A0A2C9VS90_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G112000 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.0e-96
Identity = 209/336 (62.20%), Postives = 251/336 (74.70%), Query Frame = 0 

Query: 3   SSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSK 62
           S++AT   KPLS ADSCLLSLPS+F  +PP+  LS P K      HLS S  S    S K
Sbjct: 2   SATATPTFKPLSMADSCLLSLPSIFASKPPYQCLSIPPK--PIKLHLSYSSHSLSSLSLK 61

Query: 63  KKTHLSSLVAYVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDWEX 122
            KTH SS +++VAQ+S+W Q ++    D  ++  E  +E   WENQ   + E+++SDWE 
Sbjct: 62  PKTHFSSFISFVAQTSDWTQREE--EGDTTITLSESEQEEATWENQPSGDVEAQVSDWES 121

Query: 123 XXXXXXXXXXXXXXXXVLELGDEEEGP---LEEPNEDAKLYVGNLSYDVDSQKLAMLFEK 182
                 XXXXXXXXXX                EP EDAK++VGNL YDVDSQKLAMLFE+
Sbjct: 122 NGEDEVXXXXXXXXXXXXXXXXXXXXXXXGFVEPPEDAKIFVGNLPYDVDSQKLAMLFEQ 181

Query: 183 AGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSR 242
           AGTVEIAEVIY+R++D SRGFGFVTMS+VEEAEKAVD F+RY+  GR L VNKAA RGSR
Sbjct: 182 AGTVEIAEVIYNRETDSSRGFGFVTMSTVEEAEKAVDMFHRYDLNGRFLTVNKAAPRGSR 241

Query: 243 PERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTM 302
           PER PR ++ A+RIYVGNL W+VD ARLEQVFSEHGKVV+ARV+YDR+SGRSRGFGFVTM
Sbjct: 242 PERPPRVYESAYRIYVGNLPWDVDDARLEQVFSEHGKVVNARVVYDRESGRSRGFGFVTM 301

Query: 303 ADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           + ET +NDAIAALDG+S++GRAIRVNVAE++PRRNF
Sbjct: 302 STETELNDAIAALDGRSLEGRAIRVNVAEDRPRRNF 333

[Close]
BLAST of Carg10307 vs. TrEMBL
Match: tr|A0A2P5F7B2|A0A2P5F7B2_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_106490 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95
Identity = 199/349 (57.02%), Postives = 247/349 (70.77%), Query Frame = 0 

Query: 3   SSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSK 62
           +S+  S+ K L+ +DSC LSLPSLF  + P+ F++ PSK      H S ++ SSLFS  K
Sbjct: 2   TSATASLSKTLAVSDSCRLSLPSLFTTKAPYPFIAIPSK-PLRKLHFSCAYSSSLFSIKK 61

Query: 63  KKTHLSSLVAYVAQSSEWGQE--DDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 122
           K++H SS+VA+VAQ+S+W Q+  D T+TID                 +++SE E+ +SDW
Sbjct: 62  KRSHSSSMVAFVAQASDWAQQEGDSTVTID----------------EEDVSETEAGLSDW 121

Query: 123 EXXXXXXXXXXXXXXXXXVLELGDEEEGPL--------------EEPNEDAKLYVGNLSY 182
           E                 V   G +E G                EEP EDAK++VGNL Y
Sbjct: 122 E--------GEAEGEDTAVEGEGSDEAGVFEXXXXXXXXXXYVGEEPPEDAKIFVGNLPY 181

Query: 183 DVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGR 242
           DVDSQKLAMLFEKAG VEI+EVIY+R++D+SRGFGFVTMS+VEEAEKAV+ FNRY+  GR
Sbjct: 182 DVDSQKLAMLFEKAGIVEISEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFNRYDLGGR 241

Query: 243 TLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDR 302
            L VNKA+ RG R ER PR F+P FRIYVGNL W+VD+ RLEQVFSEHGKVV+ARV+YDR
Sbjct: 242 FLTVNKASPRGVRAERPPRVFEPGFRIYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDR 301

Query: 303 DSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           ++GRSRGFGFVTM+ ET MNDAIAALDGQ++DGRAIRVNVAEE+PRR+F
Sbjct: 302 ETGRSRGFGFVTMSSETEMNDAIAALDGQTLDGRAIRVNVAEERPRRSF 325

[Close]
BLAST of Carg10307 vs. TrEMBL
Match: tr|A0A2P5ADS3|A0A2P5ADS3_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_342420 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 198/349 (56.73%), Postives = 244/349 (69.91%), Query Frame = 0 

Query: 3   SSSATSILKPLSKADSCLLSLPSLFPCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSK 62
           +S+  S+ K L+ +DSC LSLPSLF  + P+ FL+ PSK      H S ++ SSLFS  K
Sbjct: 2   TSATASLSKTLALSDSCRLSLPSLFTTKAPYPFLAIPSK-PLRKLHFSCAYSSSLFSIKK 61

Query: 63  KKTHLSSLVAYVAQSSEWGQE--DDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 122
           K++H SS VA+VAQ+S+W Q+  D T+TID                 +++SE E+ +SDW
Sbjct: 62  KRSHSSSTVAFVAQASDWAQQEGDSTVTID----------------EEDVSETEAGLSDW 121

Query: 123 EXXXXXXXXXXXXXXXXXVLELGDEEEGPL--------------EEPNEDAKLYVGNLSY 182
           E                 V   G +E G                EEP EDAK++VGNL Y
Sbjct: 122 E--------GEAEGEDAAVEXXGSDEAGVFEEXXXXXXDGGYVGEEPPEDAKIFVGNLPY 181

Query: 183 DVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGR 242
           DVDSQKLAMLFEKAG VEI+EVIY+R++D+SRGFGFVTMS+VEEAEK V+ FNRY+  GR
Sbjct: 182 DVDSQKLAMLFEKAGIVEISEVIYNRETDQSRGFGFVTMSTVEEAEKVVEMFNRYDLGGR 241

Query: 243 TLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDR 302
            L VNKA+ RG   ER PR F+P FRIYVGNL W+VD+ RLEQVFSEHGKVV+ARV+YDR
Sbjct: 242 LLTVNKASPRGVLAERPPRVFEPGFRIYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDR 301

Query: 303 DSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 336
           ++GRSRGFGFVTM+ ET MNDAIAALDGQ++DGRAIRVNVAEE+PRR+F
Sbjct: 302 ETGRSRGFGFVTMSSETEMNDAIAALDGQTLDGRAIRVNVAEERPRRSF 325

The following BLAST results are available for this feature:
BLAST of Carg10307 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023515898.11.6e-16095.2228 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022921514.12.7e-16095.2228 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata][more]
XP_022987125.12.7e-16095.2228 kDa ribonucleoprotein, chloroplastic-like [Cucurbita maxima][more]
XP_022134798.12.3e-12779.2928 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia][more]
XP_004138078.11.3e-11976.92PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus][more]
BLAST of Carg10307 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24770.11.4e-7856.8031-kDa RNA binding protein[more]
AT5G50250.15.7e-7249.70chloroplast RNA-binding protein 31B[more]
AT2G37220.12.8e-4752.28RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G53460.41.8e-3837.68chloroplast RNA-binding protein 29[more]
AT1G60000.19.1e-3845.14RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg10307 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q04836|CP31A_ARATH2.5e-7756.8031 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A... [more]
sp|P19682|ROC3_NICSY3.1e-7551.4128 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=... [more]
sp|P19683|ROC4_NICSY6.8e-7550.5831 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=... [more]
sp|P28644|ROC1_SPIOL1.9e-7258.1728 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1[more]
sp|Q9FGS0|CP31B_ARATH1.0e-7049.70RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31... [more]
BLAST of Carg10307 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNS8|A0A0A0LNS8_CUCSA8.8e-12076.92Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1[more]
tr|A0A1S3CLL5|A0A1S3CLL5_CUCME2.4e-10183.2731 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502359 ... [more]
tr|A0A2C9VS90|A0A2C9VS90_MANES4.0e-9662.20Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G112000 PE=4 SV=... [more]
tr|A0A2P5F7B2|A0A2P5F7B2_9ROSA1.5e-9557.02Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_106490 P... [more]
tr|A0A2P5ADS3|A0A2P5ADS3_PARAD1.3e-9456.73Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_3424... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10307-RACarg10307-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 158..231
e-value: 2.2E-25
score: 100.3
coord: 252..325
e-value: 2.8E-27
score: 106.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 159..228
e-value: 9.3E-20
score: 70.1
coord: 253..323
e-value: 1.4E-19
score: 69.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..235
score: 17.984
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 251..329
score: 19.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 241..334
e-value: 1.7E-27
score: 98.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 91..240
e-value: 1.3E-27
score: 98.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..152
NoneNo IPR availablePANTHERPTHR44202FAMILY NOT NAMEDcoord: 3..334
NoneNo IPR availablePANTHERPTHR44202:SF531 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC-RELATEDcoord: 3..334
NoneNo IPR availableCDDcd12399RRM_HP0827_likecoord: 158..233
e-value: 1.69682E-33
score: 118.87
NoneNo IPR availableCDDcd12399RRM_HP0827_likecoord: 252..328
e-value: 5.74918E-32
score: 114.633
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 153..246
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 245..333

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10307Cla019239Watermelon (97103) v1carwmB0356
Carg10307Csa1G002890Cucumber (Chinese Long) v2carcuB0391
Carg10307MELO3C026246Melon (DHL92) v3.5.1carmeB0369
Carg10307ClCG06G017510Watermelon (Charleston Gray)carwcgB0357
Carg10307CSPI01G00890Wild cucumber (PI 183967)carcpiB0396
Carg10307Cucsa.196330Cucumber (Gy14) v1carcgyB0423
Carg10307CmaCh11G000620Cucurbita maxima (Rimu)carcmaB0511
Carg10307CmaCh10G000830Cucurbita maxima (Rimu)carcmaB0510
Carg10307CmoCh11G000640Cucurbita moschata (Rifu)carcmoB0494
Carg10307CmoCh10G000850Cucurbita moschata (Rifu)carcmoB0493
Carg10307Lsi06G016030Bottle gourd (USVL1VR-Ls)carlsiB331
Carg10307Cp4.1LG18g08630Cucurbita pepo (Zucchini)carcpeB0508
Carg10307Cp4.1LG04g15880Cucurbita pepo (Zucchini)carcpeB0514
Carg10307CsGy1G000930Cucumber (Gy14) v2carcgybB0371
Carg10307MELO3C026246.2Melon (DHL92) v3.6.1carmedB0375
Carg10307CsaV3_1G000940Cucumber (Chinese Long) v3carcucB0395
Carg10307Cla97C06G127220Watermelon (97103) v2carwmbB0382
Carg10307Bhi02G000444Wax gourdcarwgoB0447
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10307Carg20194Silver-seed gourdcarcarB396
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10307Silver-seed gourdcarcarB387
Carg10307Silver-seed gourdcarcarB388
Carg10307Silver-seed gourdcarcarB393
Carg10307Cucurbita maxima (Rimu)carcmaB0513
Carg10307Cucurbita moschata (Rifu)carcmoB0495
Carg10307Cucurbita moschata (Rifu)carcmoB0498
Carg10307Cucurbita moschata (Rifu)carcmoB0501
Carg10307Cucurbita pepo (Zucchini)carcpeB0509
Carg10307Cucurbita pepo (Zucchini)carcpeB0513
Carg10307Watermelon (97103) v1carwmB0353
Carg10307Watermelon (97103) v2carwmbB0383
Carg10307Wax gourdcarwgoB0443