CSPI01G00890 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G00890
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ribonucleoprotein
Location	Chr1 : 534679 .. 536868 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAAAGAAGAAAGGCCATCTCTTTCTTCCCTGCTCCTTATCCTCAATTCCTCACCCCTCACCTCTTTGGGTGTTAAAGCCTTGTCCTCTAAAACCCTTCTTCTTCTTCTTCCTCTTCTATCTCTTCTATCTCTTCCTTTCGATTCAGTAATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCCGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTGAGCTTTAGTTACACTATTGCTGTCTGTTCTGTTTATGGATTTGGTTTAAGCTTTTAATCTGCTTGTGATTTGTAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTCTGTAGACAAGATTCAGCCATATTTGAGTATCATGAATGAAACCTTATCTTCATTCTTGCTTTACAATGGAAGCATTTACTGCCAGTATATCTTTGCATTTAACCATTTCATTTTATTCTGAAGAGTTTAAATGGTCTGGTTTTCATGAATCTGAGGACTTGTTAGTGTAGGACTTAGCCATTAGGACGAAAGATGAATTTGTTCAATTTTCTTTCCGTGTGTAATTTTGAAATAAGTTATTTTTTAGTGTGTGGCTACCAGCTTTTAAAGCTTATTTTCTCTAGTCAATCCTTACATATCCATAGCTGTAATGATTGTTTGTTTGAATGTTTGATGATGAGATTGATTTTTCTATCTGGATAAGCTCTAGAGGCCATGTCCTTGTGTAGAATAGAGTATTTCCAATATATGTAATTGTTTGTTTTCTTTGTTTGAGATATCCCTTCACTTTTACTTGGTACTTTGTTTAAATTTTTCCATTCTCAGTTCTACCGAAAAATTTATGGGAATAAAATGTGCTTTTCTGGGTTTATAGGATTTATCTGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTACAAAAACTTGAGTTTTCCTAATCACCTCATTGTCAAATTCAAATTGGTTTAACACTTCCTTCATGCCTCCAATAAGGAGAAGAGATTTACCAACTGCTTACAAAACATCTTGAAATTTGAAATGTGCAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGAGCCTAACCATGATGAATCCAAAAAAAAGCCCTTTTCTTCTTCTATTGTTCTATGTTCCTTTTTTTTCCTTTTTGTTTTCCCAGAAAGTATAGGTGAGTTTTGTAGTGCCATTGTTTAGCCACCTTATTACAGTGTAATTTTATTTCTTTTATGCTTCTAAAATTTCAAGTTTTCTATTATTTTGGATAATGTACGATTTCCAAGTTTCGTGCGATACCCTTCTTTAGTCCTTTTGATTTATCAATTAGAATTGTGTCAATGTTTTGATATGAATGGAGCAAATTGATTGAAA

mRNA sequence

ATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCCGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCTGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGA

Coding sequence (CDS)

ATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCCGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCTGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGA

Homology

[Close]

BLAST of CSPI01G00890 vs. Swiss-Prot
Match: CP31A_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-85
Identity = 191/347 (55.04%), Postives = 236/347 (68.01%), Query Frame = 1


Query: 1   MASSSATSLFKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MASS  TS  KPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPH 120
           F    LS  +      +  KK P +  VAQTSDWA+E    ++   ++  EN        
Sbjct: 61  FSRVSLSLKTK-----THLKKSPFVSFVAQTSDWAEEGGEGSV--AVEETENS------- 120

Query: 121 WENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPY 180
            E++++SE +    D        G E+E  GD  E    E+  + EP+E+AKLFVGNL Y
Sbjct: 121 LESQDVSEGDESEGDASEGDVSEGDESE--GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 180

Query: 181 DIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGR 240
           D++S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AV+ FNRYDL+GR
Sbjct: 181 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 240

Query: 241 LLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDR 300
           LLTVNKAAPRGSR ER PR ++P FR+YVGNLPWDVDNGRLEQLFSEHGKVV+ARV+YDR
Sbjct: 241 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 300

Query: 301 DSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           ++GRSRGFGFVTM+D   +N+AI+ALDGQ+L+GRAIRVNVAEERP R
Sbjct: 301 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of CSPI01G00890 vs. Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.1e-83
Identity = 155/205 (75.61%), Postives = 178/205 (86.83%), Query Frame = 1


Query: 127 EAEVGGDEEE--DEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVI 186
           + E GGD      E GE   Y+EP+EDAKLFVGNLPYDIDSE LA LF++AG VEIAEVI
Sbjct: 70  DQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVI 129

Query: 187 YNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQP 246
           YNRETDRSRGFGFVTMSTVEEA+KAV+ +++YDL+GRLLTVNKAAPRGSR ER PR FQP
Sbjct: 130 YNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP 189

Query: 247 TFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAI 306
           T+RIYVGN+PWD+D+ RLEQ+FSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AI
Sbjct: 190 TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249

Query: 307 AALDGQSLDGRAIRVNVAEERPRRN 330
           A LDGQ+LDGR IRVN AEERPRRN
Sbjct: 250 ANLDGQTLDGRTIRVNAAEERPRRN 274

[Close]

BLAST of CSPI01G00890 vs. Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.6e-82
Identity = 183/328 (55.79%), Postives = 225/328 (68.60%), Query Frame = 1


Query: 11  KPLSKP-----DSCFLSLPSLFTGRPPHTFLSFP---SKFIPFHLSS-SSSYSSGFSPSK 70
           KP+ KP     +SC +SLP LF         ++P   +   P  L   S +YS      K
Sbjct: 6   KPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCILSPK 65

Query: 71  KKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEG 130
           KK  + ++ +      E++T+ +D +       G+E G  +  E   E        E  G
Sbjct: 66  KKTSVSALQE------EENTLILDGQ-------GQESGDLFNFEPSGEETEEEGFVEAVG 125

Query: 131 EDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIA 190
           + G S+ EV  DEEE+E      ++EP EDAKLFVGNLPYD+DSE LA LFE+AG VEIA
Sbjct: 126 DAGESD-EVEADEEEEE------FQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIA 185

Query: 191 EVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRP 250
           EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ +NRYD++GRLLTVNKAA RG R ER PR 
Sbjct: 186 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRT 245

Query: 251 FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMN 310
           F+ ++RIYVGN+PW +D+ RLEQLFSEHGKVV ARV+YDR++GRSRGFGFVTMA E  M+
Sbjct: 246 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 305

Query: 311 DAIAALDGQSLDGRAIRVNVAEERPRRN 330
           DAIA LDGQSLDGR IRVNVAE+R RRN
Sbjct: 306 DAIANLDGQSLDGRTIRVNVAEDRSRRN 313

[Close]

BLAST of CSPI01G00890 vs. Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 7.6e-79
Identity = 168/263 (63.88%), Postives = 193/263 (73.38%), Query Frame = 1


Query: 69  VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEA 128
           VAQTS+W QE  T  +   L+ + +   EG   W                      GSE 
Sbjct: 2   VAQTSEWEQEGSTNAV---LEGESD--PEGAVSW----------------------GSET 61

Query: 129 EVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRE 188
           +V   +E   EG QG + EP E+AKLFVGNLPYD+DSEKLA +F+ AG VEIAEVIYNRE
Sbjct: 62  QVS--DEGGVEGGQG-FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRE 121

Query: 189 TDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR-PFQPTFR 248
           TDRSRGFGFVTMSTVEEAEKAV+  N YD+ GR LTVNKAAPRGS  ER PR  F+P+ R
Sbjct: 122 TDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCR 181

Query: 249 IYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 308
           +YVGNLPWDVD  RLEQLFSEHGKVV ARV+ DR++GRSRGFGFVTM+ E+ +NDAIAAL
Sbjct: 182 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 233

Query: 309 DGQSLDGRAIRVNVAEERPRRNF 331
           DGQ+LDGRA+RVNVAEERPRR F
Sbjct: 242 DGQTLDGRAVRVNVAEERPRRAF 233

[Close]

BLAST of CSPI01G00890 vs. Swiss-Prot
Match: CP31B_ARATH (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.2e-76
Identity = 165/288 (57.29%), Postives = 203/288 (70.49%), Query Frame = 1


Query: 45  FHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWEN 104
           F++SSS S+   FS S +  +L    ++         +T   +  N           W  
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----------WAE 89

Query: 105 EELSETESRISDWEGEGEDGGSEAEVGGDE---EEDEEGEQGP-YEEPNEDAKLFVGNLP 164
           EE             EGEDG     +GG     +E  E E G  + EP E+AKLFVGNLP
Sbjct: 90  EE-------------EGEDGS----IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLP 149

Query: 165 YDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSG 224
           YD+DS+ LAMLFE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ FN ++++G
Sbjct: 150 YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 209

Query: 225 RLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYD 284
           R LTVN+AAPRGSR ER+PR +   FRIYVGNLPWDVD+GRLE+LFSEHGKVVDARV+ D
Sbjct: 210 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 269

Query: 285 RDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           R++GRSRGFGFV M++E  +N AIAALDGQ+L+GRAI+VNVAEER RR
Sbjct: 270 RETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of CSPI01G00890 vs. TrEMBL
Match: A0A0A0LNS8_CUCSA (Ribonucleoprotein OS=Cucumis sativus GN=Csa_1G002890 PE=4 SV=1)

HSP 1 Score: 648.7 bits (1672), Expect = 3.9e-183
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 1


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 133

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 134 KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 193

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 194 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 253

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 254 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 313

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 314 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 373

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 374 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 403

[Close]

BLAST of CSPI01G00890 vs. TrEMBL
Match: A0A067K455_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11382 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 7.8e-107
Identity = 222/340 (65.29%), Postives = 256/340 (75.29%), Query Frame = 1


Query: 3   SSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKK 62
           S++A+  FKPLS  DSC LSLPS+FT + P+  LS P + I  HLS  S   S  S  K 
Sbjct: 2   SATASPTFKPLSMADSCLLSLPSIFTAKRPYQCLSIPPRPIKLHLSHPSHSLSVLS-LKP 61

Query: 63  KPH----LPSVAQTSDWAQ---EDDTITIDPKLDNDENGGEEGGPHWENEELSETESRIS 122
           K H    +P VAQTSDWAQ   ED+T     + + +E+        WEN+E    E+R+S
Sbjct: 62  KTHFSSLIPFVAQTSDWAQQGEEDETTITITESEQEEST-------WENQESDGAEARVS 121

Query: 123 DWEGEGED-----GGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAM 182
           DWE EGED     GG E E G +E   E      + EP EDAK+FVGNLPYD+DSEKLAM
Sbjct: 122 DWESEGEDAAAVAGGDEGESGEEESFQEPEADEGFVEPPEDAKIFVGNLPYDVDSEKLAM 181

Query: 183 LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAP 242
           LFE+AGTVEIAEVIYNRE D SRGFGFVTMSTVEEAEKAV+ F+RYDLSGRLLTVNKA+P
Sbjct: 182 LFEQAGTVEIAEVIYNRENDSSRGFGFVTMSTVEEAEKAVEMFHRYDLSGRLLTVNKASP 241

Query: 243 RGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFG 302
           RGSR ER PR ++P FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARV+YDR++GRSRGFG
Sbjct: 242 RGSRPERPPRTYEPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVVYDRETGRSRGFG 301

Query: 303 FVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           FVTMA ET ++DAIAALDG+SLDGRAIRVNVAE RPRRNF
Sbjct: 302 FVTMASETELHDAIAALDGRSLDGRAIRVNVAEGRPRRNF 333

[Close]

BLAST of CSPI01G00890 vs. TrEMBL
Match: B9RAR1_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1508030 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 3.3e-105
Identity = 217/324 (66.98%), Postives = 257/324 (79.32%), Query Frame = 1


Query: 10  FKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSV 69
           FKPLS  DSC LSLPS+FT +PP+  LS PS+  P  L  + SYSS  S +     +P V
Sbjct: 4   FKPLSMADSCLLSLPSIFTSKPPYLSLSVPSR-PPIKLHITQSYSSLKSKTHFSSLVPLV 63

Query: 70  AQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEEL-SETESRISDWEGEGEDGGSEA 129
           AQTSDWAQ+++    D  +   E+  E+    WE +E  +ETE+R+SDW+ EGE    + 
Sbjct: 64  AQTSDWAQQEEN---DATVTLAESEQEQ---EWEGQESETETEARVSDWDSEGESAAVDG 123

Query: 130 EVGGDEEEDEEGEQGP--YEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYN 189
           + G +EEE  EG +    +EEP EDAK+FVGNLPYD+DS+KLAMLFE+AGTVEIAEVIYN
Sbjct: 124 Q-GEEEEEVFEGSEPEEAFEEPPEDAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYN 183

Query: 190 RETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTF 249
           RETD SRGFGFV+MSTVEEAEKAV+ F+R+DL GRLLTVNKAAPRGSR ER PR F+P +
Sbjct: 184 RETDTSRGFGFVSMSTVEEAEKAVEMFHRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGY 243

Query: 250 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 309
           RIYVGNLPWDVDN RLEQ+FSEHGKVVDARV+YDRD+GRSRGFGFVTM+ ET +NDAIAA
Sbjct: 244 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAA 303

Query: 310 LDGQSLDGRAIRVNVAEERPRRNF 331
           LDG+SLDGRAIRVNVAE+RPRRNF
Sbjct: 304 LDGRSLDGRAIRVNVAEQRPRRNF 319

[Close]

BLAST of CSPI01G00890 vs. TrEMBL
Match: A0A059CXZ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00177 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 6.2e-104
Identity = 222/345 (64.35%), Postives = 256/345 (74.20%), Query Frame = 1


Query: 3   SSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKK 62
           SS+   +FKPLS  DSC  SL +  +    H +LS P + +  HLS SSS SS F+ S  
Sbjct: 2   SSATAPVFKPLSITDSCPPSLFASPSSESSHPYLSIPPRPLKIHLSCSSSSSSCFAQSAL 61

Query: 63  KPH----------LPSVAQTSDWAQEDDTITIDPKLDND-------ENGGEEGGP-HWEN 122
            PH          +  VAQTSDWAQ+D+  T+   LD +       E   EEGG   W N
Sbjct: 62  APHPLRKTHHPNFVAFVAQTSDWAQQDEDNTVTTTLDQEQEQEQVQEKEQEEGGESEWGN 121

Query: 123 EELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDID 182
           +E   TE+R+SDWEG    GG   E G  EE + EGE   + EP EDAKLFVGNLPYD+D
Sbjct: 122 QE---TEARVSDWEG----GGESNEDGAVEEGEGEGEGETFVEPPEDAKLFVGNLPYDVD 181

Query: 183 SEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLT 242
           S+KLAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVD F++YD+SGR LT
Sbjct: 182 SQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDIFHQYDMSGRFLT 241

Query: 243 VNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSG 302
           VNKAAPRGSR ER  R F+ +FRIYVGNLPWDVDNGRLEQ+FSEHGKVV+ARV+YDR++G
Sbjct: 242 VNKAAPRGSRPERPVRTFEASFRIYVGNLPWDVDNGRLEQVFSEHGKVVNARVVYDRETG 301

Query: 303 RSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRN 330
           RSRGFGFVTMA ET MNDAIAALDGQSL+GRAIRVNVAEER RR+
Sbjct: 302 RSRGFGFVTMASETEMNDAIAALDGQSLEGRAIRVNVAEERSRRS 339

[Close]

BLAST of CSPI01G00890 vs. TrEMBL
Match: V4TIN7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020731mg PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.3e-101
Identity = 219/342 (64.04%), Postives = 254/342 (74.27%), Query Frame = 1


Query: 3   SSSATSLFKPLSK--PDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFS-P 62
           SSS  S+ KPLS     +  LS PS+F   P  +    P   I  HLS SS  S GFS  
Sbjct: 2   SSSTASVLKPLSSMADSTSLLSPPSIFARNPYFSIHPRPRP-IKLHLSDSSLSSKGFSFK 61

Query: 63  SKKKPHLPS----VAQTSDWAQED---DTITIDPKLDNDENGGEEGGPHWENEELSETES 122
            KK  H  S    VAQTSDWA ++   D  TI  + + +ENG EE  P+WEN+   ETE 
Sbjct: 62  LKKTTHFSSFTTFVAQTSDWADQEEDKDNTTITLEQEQEENGEEE--PNWENQGADETEG 121

Query: 123 RISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEE-----PNEDAKLFVGNLPYDIDSEK 182
            +SDW   GE  G +  V   E ++E GE+G +EE     P EDAKLFVGNLPYD+DSEK
Sbjct: 122 NLSDW---GEPEGEDTVVEAGERQEESGEEGVFEEEEFVEPPEDAKLFVGNLPYDVDSEK 181

Query: 183 LAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNK 242
           LAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV+ F+RYD+ GRLLTVNK
Sbjct: 182 LAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNK 241

Query: 243 AAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSR 302
           AAPRG++ ER PR F+P FRIYVGNLPW+VDN RLEQ+FSEHGKVV+ARV+YDR++GRSR
Sbjct: 242 AAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSR 301

Query: 303 GFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRN 330
           GFGFVTM+ ET +NDAIAALDGQ+LDGRAIRVNVAE+R RR+
Sbjct: 302 GFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 337

[Close]

BLAST of CSPI01G00890 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 317.4 bits (812), Expect = 1.1e-86
Identity = 191/347 (55.04%), Postives = 236/347 (68.01%), Query Frame = 1


Query: 1   MASSSATSLFKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MASS  TS  KPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPH 120
           F    LS  +      +  KK P +  VAQTSDWA+E    ++   ++  EN        
Sbjct: 61  FSRVSLSLKTK-----THLKKSPFVSFVAQTSDWAEEGGEGSV--AVEETENS------- 120

Query: 121 WENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPY 180
            E++++SE +    D        G E+E  GD  E    E+  + EP+E+AKLFVGNL Y
Sbjct: 121 LESQDVSEGDESEGDASEGDVSEGDESE--GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 180

Query: 181 DIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGR 240
           D++S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AV+ FNRYDL+GR
Sbjct: 181 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 240

Query: 241 LLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDR 300
           LLTVNKAAPRGSR ER PR ++P FR+YVGNLPWDVDNGRLEQLFSEHGKVV+ARV+YDR
Sbjct: 241 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 300

Query: 301 DSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           ++GRSRGFGFVTM+D   +N+AI+ALDGQ+L+GRAIRVNVAEERP R
Sbjct: 301 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of CSPI01G00890 vs. TAIR10
Match: AT5G50250.1 (AT5G50250.1 chloroplast RNA-binding protein 31B)

HSP 1 Score: 288.1 bits (736), Expect = 6.8e-78
Identity = 165/288 (57.29%), Postives = 203/288 (70.49%), Query Frame = 1


Query: 45  FHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWEN 104
           F++SSS S+   FS S +  +L    ++         +T   +  N           W  
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----------WAE 89

Query: 105 EELSETESRISDWEGEGEDGGSEAEVGGDE---EEDEEGEQGP-YEEPNEDAKLFVGNLP 164
           EE             EGEDG     +GG     +E  E E G  + EP E+AKLFVGNLP
Sbjct: 90  EE-------------EGEDGS----IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLP 149

Query: 165 YDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSG 224
           YD+DS+ LAMLFE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ FN ++++G
Sbjct: 150 YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 209

Query: 225 RLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYD 284
           R LTVN+AAPRGSR ER+PR +   FRIYVGNLPWDVD+GRLE+LFSEHGKVVDARV+ D
Sbjct: 210 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 269

Query: 285 RDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           R++GRSRGFGFV M++E  +N AIAALDGQ+L+GRAI+VNVAEER RR
Sbjct: 270 RETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of CSPI01G00890 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 195.3 bits (495), Expect = 6.0e-50
Identity = 115/224 (51.34%), Postives = 140/224 (62.50%), Query Frame = 1


Query: 126 SEAEVGGDEEEDEEGEQGPYEEPN--EDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           SE EV    EED   +  P +E +   D KLFVGNLP+++DS +LA LFE AG VE+ EV
Sbjct: 67  SEFEV----EEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 126

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQ 245
           IY++ T RSRGFGFVTMS+V E E A   FN Y+L GR L VN   P   R++   R  +
Sbjct: 127 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 186

Query: 246 PTF-------------------RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSG 305
            +F                   R+YVGNL W VD+  LE LFSE GKVV+ARV+YDRDSG
Sbjct: 187 SSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSG 246

Query: 306 RSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           RS+GFGFVT      + +AI +LDG  LDGR IRV+ AE RP R
Sbjct: 247 RSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286

[Close]

BLAST of CSPI01G00890 vs. TAIR10
Match: AT3G52380.1 (AT3G52380.1 chloroplast RNA-binding protein 33)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-37
Identity = 89/231 (38.53%), Postives = 141/231 (61.04%), Query Frame = 1


Query: 108 SETESRISDWEGEGE-DGGSEAEVGGDEEEDE-EGEQGPYEEPNEDAKLFVGNLPYDIDS 167
           +ETE+  +D E +   +   E E  GDE E+E E E+   +   E+ +L+VGNLPY I S
Sbjct: 70  AETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITS 129

Query: 168 EKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTV 227
            +L+ +F +AGTV   +++Y++ TDRSRGFGFVTM ++EEA++A+  FN   + GR + V
Sbjct: 130 SELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189

Query: 228 N-KAAPRGSRQEREPRPFQPTFR--------IYVGNLPWDVDNGRLEQLFSEHGKVVDAR 287
           N    PRG   E      +   R        +Y GNL W++ +  L+  F +   V+ A+
Sbjct: 190 NFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAK 249

Query: 288 VLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPR 328
           V+Y+R++GRSRGFGF++      +  A+A ++G  ++GRA+R+N+A ER +
Sbjct: 250 VIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

[Close]

BLAST of CSPI01G00890 vs. TAIR10
Match: AT1G60000.1 (AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.8 bits (377), Expect = 2.9e-36
Identity = 82/192 (42.71%), Postives = 118/192 (61.46%), Query Frame = 1


Query: 133 DEEEDEEGEQGPYEEPNE-DAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDR 192
           +EEE ++G     + P   + KL+ GNLPY++DS  LA + +     E+ EV+YNR+T +
Sbjct: 65  EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124

Query: 193 SRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVG 252
           SRGF FVTMS VE+    +D  +  +  GR L VN A     +  +EP   +   +++VG
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK--PKPNKEPLYPETEHKLFVG 184

Query: 253 NLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQS 312
           NL W V +  L   F E G VV ARV++D D+GRSRG+GFV  + +  M  A+ +LDG  
Sbjct: 185 NLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 244

Query: 313 LDGRAIRVNVAE 324
           L+GRAIRVN+A+
Sbjct: 245 LEGRAIRVNLAQ 254

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: gi|449440612|ref|XP_004138078.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 648.7 bits (1672), Expect = 5.6e-183
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 1


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 330

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: gi|700208424|gb|KGN63520.1| (Ribonucleoprotein [Cucumis sativus])

HSP 1 Score: 648.7 bits (1672), Expect = 5.6e-183
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 1


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 133

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 134 KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 193

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 194 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 253

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 254 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 313

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 314 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 373

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 374 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 403

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: gi|659129034|ref|XP_008464495.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 473.0 bits (1216), Expect = 4.2e-130
Identity = 237/249 (95.18%), Postives = 245/249 (98.39%), Query Frame = 1


Query: 82  ITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGE 141
           +TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEE+EEGE
Sbjct: 1   MTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEEEEGE 60

Query: 142 QGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMS 201
           QGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMS
Sbjct: 61  QGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMS 120

Query: 202 TVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGR 261
           TVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+PRPFQP FRIYVGNLPWDVDN R
Sbjct: 121 TVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPRPFQPAFRIYVGNLPWDVDNAR 180

Query: 262 LEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNV 321
           LEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSL+GRAIRVNV
Sbjct: 181 LEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNV 240

Query: 322 AEERPRRNF 331
           AEERPRRNF
Sbjct: 241 AEERPRRNF 249

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: gi|802649492|ref|XP_012079947.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas])

HSP 1 Score: 395.2 bits (1014), Expect = 1.1e-106
Identity = 222/340 (65.29%), Postives = 256/340 (75.29%), Query Frame = 1


Query: 3   SSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKK 62
           S++A+  FKPLS  DSC LSLPS+FT + P+  LS P + I  HLS  S   S  S  K 
Sbjct: 2   SATASPTFKPLSMADSCLLSLPSIFTAKRPYQCLSIPPRPIKLHLSHPSHSLSVLS-LKP 61

Query: 63  KPH----LPSVAQTSDWAQ---EDDTITIDPKLDNDENGGEEGGPHWENEELSETESRIS 122
           K H    +P VAQTSDWAQ   ED+T     + + +E+        WEN+E    E+R+S
Sbjct: 62  KTHFSSLIPFVAQTSDWAQQGEEDETTITITESEQEEST-------WENQESDGAEARVS 121

Query: 123 DWEGEGED-----GGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAM 182
           DWE EGED     GG E E G +E   E      + EP EDAK+FVGNLPYD+DSEKLAM
Sbjct: 122 DWESEGEDAAAVAGGDEGESGEEESFQEPEADEGFVEPPEDAKIFVGNLPYDVDSEKLAM 181

Query: 183 LFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAP 242
           LFE+AGTVEIAEVIYNRE D SRGFGFVTMSTVEEAEKAV+ F+RYDLSGRLLTVNKA+P
Sbjct: 182 LFEQAGTVEIAEVIYNRENDSSRGFGFVTMSTVEEAEKAVEMFHRYDLSGRLLTVNKASP 241

Query: 243 RGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFG 302
           RGSR ER PR ++P FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARV+YDR++GRSRGFG
Sbjct: 242 RGSRPERPPRTYEPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVVYDRETGRSRGFG 301

Query: 303 FVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           FVTMA ET ++DAIAALDG+SLDGRAIRVNVAE RPRRNF
Sbjct: 302 FVTMASETELHDAIAALDGRSLDGRAIRVNVAEGRPRRNF 333

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: gi|255540443|ref|XP_002511286.1| (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Ricinus communis])

HSP 1 Score: 389.8 bits (1000), Expect = 4.7e-105
Identity = 217/324 (66.98%), Postives = 257/324 (79.32%), Query Frame = 1


Query: 10  FKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSV 69
           FKPLS  DSC LSLPS+FT +PP+  LS PS+  P  L  + SYSS  S +     +P V
Sbjct: 4   FKPLSMADSCLLSLPSIFTSKPPYLSLSVPSR-PPIKLHITQSYSSLKSKTHFSSLVPLV 63

Query: 70  AQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEEL-SETESRISDWEGEGEDGGSEA 129
           AQTSDWAQ+++    D  +   E+  E+    WE +E  +ETE+R+SDW+ EGE    + 
Sbjct: 64  AQTSDWAQQEEN---DATVTLAESEQEQ---EWEGQESETETEARVSDWDSEGESAAVDG 123

Query: 130 EVGGDEEEDEEGEQGP--YEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYN 189
           + G +EEE  EG +    +EEP EDAK+FVGNLPYD+DS+KLAMLFE+AGTVEIAEVIYN
Sbjct: 124 Q-GEEEEEVFEGSEPEEAFEEPPEDAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYN 183

Query: 190 RETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTF 249
           RETD SRGFGFV+MSTVEEAEKAV+ F+R+DL GRLLTVNKAAPRGSR ER PR F+P +
Sbjct: 184 RETDTSRGFGFVSMSTVEEAEKAVEMFHRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGY 243

Query: 250 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 309
           RIYVGNLPWDVDN RLEQ+FSEHGKVVDARV+YDRD+GRSRGFGFVTM+ ET +NDAIAA
Sbjct: 244 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAA 303

Query: 310 LDGQSLDGRAIRVNVAEERPRRNF 331
           LDG+SLDGRAIRVNVAE+RPRRNF
Sbjct: 304 LDGRSLDGRAIRVNVAEQRPRRNF 319

The following BLAST results are available for this feature:

BLAST of CSPI01G00890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CP31A_ARATH	1.9e-85	55.04	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV...	[more]
ROC3_NICSY	5.1e-83	75.61	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	[more]
ROC4_NICSY	5.6e-82	55.79	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	[more]
ROC1_SPIOL	7.6e-79	63.88	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1	[more]
CP31B_ARATH	1.2e-76	57.29	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 S...	[more]

BLAST of CSPI01G00890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNS8_CUCSA	3.9e-183	100.00	Ribonucleoprotein OS=Cucumis sativus GN=Csa_1G002890 PE=4 SV=1	[more]
A0A067K455_JATCU	7.8e-107	65.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11382 PE=4 SV=1	[more]
B9RAR1_RICCO	3.3e-105	66.98	Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1508030 PE=...	[more]
A0A059CXZ6_EUCGR	6.2e-104	64.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00177 PE=4 SV=1	[more]
V4TIN7_9ROSI	1.3e-101	64.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020731mg PE=4 SV=1	[more]

BLAST of CSPI01G00890 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24770.1	1.1e-86	55.04	31-kDa RNA binding protein	[more]
AT5G50250.1	6.8e-78	57.29	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	6.0e-50	51.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.5e-37	38.53	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	2.9e-36	42.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CSPI01G00890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440612\|ref\|XP_004138078.1\|	5.6e-183	100.00	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus]	[more]
gi\|700208424\|gb\|KGN63520.1\|	5.6e-183	100.00	Ribonucleoprotein [Cucumis sativus]	[more]
gi\|659129034\|ref\|XP_008464495.1\|	4.2e-130	95.18	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
gi\|802649492\|ref\|XP_012079947.1\|	1.1e-106	65.29	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]	[more]
gi\|255540443\|ref\|XP_002511286.1\|	4.7e-105	66.98	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045087	innate immune response
biological_process	GO:0043489	RNA stabilization
biological_process	GO:0006396	RNA processing
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009631	cold acclimation
biological_process	GO:0030154	cell differentiation
biological_process	GO:0016553	base conversion or substitution editing
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0008266	poly(U) RNA binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G00890.1	CSPI01G00890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 248..318 score: 5.8E-21coord: 154..223 score: 2.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 153..226 score: 1.4E-25coord: 247..320 score: 1.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 246..324 score: 20.201coord: 152..230 score: 18
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 134..235 score: 4.2E-29coord: 236..329 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 147..240 score: 3.49E-27coord: 240..328 score: 2.15
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 118..328 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G00890	Cla019239	Watermelon (97103) v1	cpiwmB099
CSPI01G00890	Csa1G002890	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G00890	MELO3C026246	Melon (DHL92) v3.5.1	cpimeB055
CSPI01G00890	ClCG06G017510	Watermelon (Charleston Gray)	cpiwcgB083
CSPI01G00890	Lsi06G016030	Bottle gourd (USVL1VR-Ls)	cpilsiB070
CSPI01G00890	MELO3C026246.2	Melon (DHL92) v3.6.1	cpimedB049
CSPI01G00890	CsaV3_1G000940	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G00890	Cla97C06G127220	Watermelon (97103) v2	cpiwmbB079
CSPI01G00890	Bhi02G000444	Wax gourd	cpiwgoB080
CSPI01G00890	Cucsa.196330	Cucumber (Gy14) v1	cgycpiB310
CSPI01G00890	CmaCh10G000830	Cucurbita maxima (Rimu)	cmacpiB049
CSPI01G00890	CmaCh11G000620	Cucurbita maxima (Rimu)	cmacpiB085
CSPI01G00890	CmoCh10G000850	Cucurbita moschata (Rifu)	cmocpiB040
CSPI01G00890	CmoCh11G000640	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G00890	Cp4.1LG04g15880	Cucurbita pepo (Zucchini)	cpecpiB656
CSPI01G00890	CsGy1G000930	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G00890	Carg20194	Silver-seed gourd	carcpiB1083
CSPI01G00890	Carg10307	Silver-seed gourd	carcpiB0396

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G00890	Cucumber (Chinese Long) v2	cpicuB024
CSPI01G00890	Melon (DHL92) v3.5.1	cpimeB015
CSPI01G00890	Watermelon (Charleston Gray)	cpiwcgB002
CSPI01G00890	Watermelon (Charleston Gray)	cpiwcgB093
CSPI01G00890	Watermelon (97103) v1	cpiwmB002
CSPI01G00890	Cucurbita pepo (Zucchini)	cpecpiB361
CSPI01G00890	Melon (DHL92) v3.6.1	cpimedB014
CSPI01G00890	Silver-seed gourd	carcpiB0399
CSPI01G00890	Cucumber (Chinese Long) v3	cpicucB028
CSPI01G00890	Watermelon (97103) v2	cpiwmbB091
CSPI01G00890	Wax gourd	cpiwgoB009
CSPI01G00890	Wild cucumber (PI 183967)	cpicpiB032
CSPI01G00890	Wild cucumber (PI 183967)	cpicpiB014
CSPI01G00890	Cucurbita maxima (Rimu)	cmacpiB109
CSPI01G00890	Cucurbita maxima (Rimu)	cmacpiB227
CSPI01G00890	Cucurbita maxima (Rimu)	cmacpiB238
CSPI01G00890	Cucurbita moschata (Rifu)	cmocpiB088
CSPI01G00890	Cucurbita moschata (Rifu)	cmocpiB213
CSPI01G00890	Cucurbita moschata (Rifu)	cmocpiB226