Carg10259 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10259
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAC domain protein,
Location	Cucurbita_argyrosperma_scaffold_047 : 128982 .. 129723 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGATTGCCTCCTGGGTTTCGGTTTGAGCCGACGGAAGAAGAGCTGGTGTTTGAGTATCTAAAGTGCAAGGTATTCTCCTTTGCCTTGCCTGCTTCTATCATTCCAGAGATCACCACTAGTGTTTGCAACTTGGATCCTTGGGATATTCCAGGTAACTGATTCTGCTTTAAGTTTTCAAGTAATGTGGGATTGGTTTGGTCTGAATTTAGGTTGCTTTGACTTTGTGCTAGGAGGCGGCGGGGGTTGGGAGGAAGATACATACCTGTTCAGCAAGAACCAGGAGTGTGATCGAAGAGTTCGATGGAGTCCGAGTGGGTACTGGAAGGCCAAGGGGTCGGAGAGGAAGATAGTGAGTTCGAGTAGTGACGCAGTGGGACTGGTGGGGATGAGGAAGACTCTGCTTTTCTGGATGGGGAGCAGCAGTAGTAGGAAGACGGGGTGGGTGATGCATGAATACCGCCTGCTTTTGAGCCCTTCACAAACGCCTACGCCTACGCCTCCCAGTGCAGTAATTAATAACAATGAGAAGTGGGTTGTGTGCCGCATCTTCTGCAACAACTCGGGGATCAAGAATGACCTCCATTTCCATCCCCTCCAATATCCTGTTTCTGCTTCTACAAACGACGACACCAACGCCCTCTCCGACGATTCTGTTTCCTCCACCGCCTCATCCTCCTCCTTTTCCGCCACTACTACAATGCCCTTTCCCAACCACCATTCTTCTGCCTCTAATTAA

mRNA sequence

ATGAGGGGATTGCCTCCTGGGTTTCGGTTTGAGCCGACGGAAGAAGAGCTGGTGTTTGAGTATCTAAAGTGCAAGGTATTCTCCTTTGCCTTGCCTGCTTCTATCATTCCAGAGATCACCACTAGTGTTTGCAACTTGGATCCTTGGGATATTCCAGGAGGCGGCGGGGGTTGGGAGGAAGATACATACCTGTTCAGCAAGAACCAGGAGTGTGATCGAAGAGTTCGATGGAGTCCGAGTGGGTACTGGAAGGCCAAGGGGTCGGAGAGGAAGATAGTGAGTTCGAGTAGTGACGCAGTGGGACTGGTGGGGATGAGGAAGACTCTGCTTTTCTGGATGGGGAGCAGCAGTAGTAGGAAGACGGGGTGGGTGATGCATGAATACCGCCTGCTTTTGAGCCCTTCACAAACGCCTACGCCTACGCCTCCCAGTGCAGTAATTAATAACAATGAGAAGTGGGTTGTGTGCCGCATCTTCTGCAACAACTCGGGGATCAAGAATGACCTCCATTTCCATCCCCTCCAATATCCTGTTTCTGCTTCTACAAACGACGACACCAACGCCCTCTCCGACGATTCTGTTTCCTCCACCGCCTCATCCTCCTCCTTTTCCGCCACTACTACAATGCCCTTTCCCAACCACCATTCTTCTGCCTCTAATTAA

Coding sequence (CDS)

ATGAGGGGATTGCCTCCTGGGTTTCGGTTTGAGCCGACGGAAGAAGAGCTGGTGTTTGAGTATCTAAAGTGCAAGGTATTCTCCTTTGCCTTGCCTGCTTCTATCATTCCAGAGATCACCACTAGTGTTTGCAACTTGGATCCTTGGGATATTCCAGGAGGCGGCGGGGGTTGGGAGGAAGATACATACCTGTTCAGCAAGAACCAGGAGTGTGATCGAAGAGTTCGATGGAGTCCGAGTGGGTACTGGAAGGCCAAGGGGTCGGAGAGGAAGATAGTGAGTTCGAGTAGTGACGCAGTGGGACTGGTGGGGATGAGGAAGACTCTGCTTTTCTGGATGGGGAGCAGCAGTAGTAGGAAGACGGGGTGGGTGATGCATGAATACCGCCTGCTTTTGAGCCCTTCACAAACGCCTACGCCTACGCCTCCCAGTGCAGTAATTAATAACAATGAGAAGTGGGTTGTGTGCCGCATCTTCTGCAACAACTCGGGGATCAAGAATGACCTCCATTTCCATCCCCTCCAATATCCTGTTTCTGCTTCTACAAACGACGACACCAACGCCCTCTCCGACGATTCTGTTTCCTCCACCGCCTCATCCTCCTCCTTTTCCGCCACTACTACAATGCCCTTTCCCAACCACCATTCTTCTGCCTCTAATTAA

Protein sequence

MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSSSSRKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPVSASTNDDTNALSDDSVSSTASSSSFSATTTMPFPNHHSSASN

Homology

[Close]

BLAST of Carg10259 vs. NCBI nr
Match: XP_023516924.1 (NAC domain-containing protein 83-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.6 bits (1054), Expect = 3.3e-111
Identity = 212/220 (96.36%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           MRGLPPGFRFEPTEEELVFEYLKCKVFSF LPASIIPEITTSVCNLDPWDIPGGGG W+E
Sbjct: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFPLPASIIPEITTSVCNLDPWDIPGGGGNWQE 60

Query: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSSSSRK 120
           DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTL+FWMGSSSSRK
Sbjct: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLVFWMGSSSSRK 120

Query: 121 TGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180
           TGWVMHEYRLLLSPSQ  TPTPPS VINN EKWVVCRIFCNNSGIKNDLHFHPLQYPVSA
Sbjct: 121 TGWVMHEYRLLLSPSQ--TPTPPSVVINNMEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180

Query: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 221
           STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN
Sbjct: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 218

[Close]

BLAST of Carg10259 vs. NCBI nr
Match: XP_022988606.1 (NAC domain-containing protein 83-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 406.4 bits (1043), Expect = 6.3e-110
Identity = 210/220 (95.45%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPE TTSVCNLDPWDIPGGGGGWEE
Sbjct: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPETTTSVCNLDPWDIPGGGGGWEE 60

Query: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSSSSRK 120
           D YLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTL+FWMGSSSSRK
Sbjct: 61  DAYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLVFWMGSSSSRK 120

Query: 121 TGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180
           TGWVMHEYRLLLSP+Q   PTPPS VINN EKWVVCRI CNNSGIKNDLHFHPLQYPVSA
Sbjct: 121 TGWVMHEYRLLLSPTQ--APTPPSVVINNMEKWVVCRIVCNNSGIKNDLHFHPLQYPVSA 180

Query: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 221
           STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN
Sbjct: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 218

[Close]

BLAST of Carg10259 vs. NCBI nr
Match: XP_023516925.1 (NAC domain-containing protein 83-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.7 bits (1036), Expect = 4.1e-109
Identity = 211/220 (95.91%), Postives = 213/220 (96.82%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           MRGLPPGFRFEPTEEELVFEYLKCKVFSF LPASIIPEITTSVCNLDPWDIP GGG W+E
Sbjct: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFPLPASIIPEITTSVCNLDPWDIP-GGGNWQE 60

Query: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSSSSRK 120
           DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTL+FWMGSSSSRK
Sbjct: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLVFWMGSSSSRK 120

Query: 121 TGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180
           TGWVMHEYRLLLSPSQ  TPTPPS VINN EKWVVCRIFCNNSGIKNDLHFHPLQYPVSA
Sbjct: 121 TGWVMHEYRLLLSPSQ--TPTPPSVVINNMEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180

Query: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 221
           STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN
Sbjct: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 217

[Close]

BLAST of Carg10259 vs. NCBI nr
Match: XP_022988607.1 (NAC domain-containing protein 83-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 399.4 bits (1025), Expect = 7.7e-108
Identity = 209/220 (95.00%), Postives = 211/220 (95.91%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPE TTSVCNLDPWDIP GGGGWEE
Sbjct: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPETTTSVCNLDPWDIP-GGGGWEE 60

Query: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSSSSRK 120
           D YLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTL+FWMGSSSSRK
Sbjct: 61  DAYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLVFWMGSSSSRK 120

Query: 121 TGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180
           TGWVMHEYRLLLSP+Q   PTPPS VINN EKWVVCRI CNNSGIKNDLHFHPLQYPVSA
Sbjct: 121 TGWVMHEYRLLLSPTQ--APTPPSVVINNMEKWVVCRIVCNNSGIKNDLHFHPLQYPVSA 180

Query: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 221
           STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN
Sbjct: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 217

[Close]

BLAST of Carg10259 vs. NCBI nr
Match: XP_022921430.1 (NAC domain-containing protein 83 isoform X1 [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 3.3e-103
Identity = 201/220 (91.36%), Postives = 204/220 (92.73%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGG W+E
Sbjct: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGDWQE 60

Query: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSSSSRK 120
           DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTL+FWMGSSSSRK
Sbjct: 61  DTYLFSKNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLVFWMGSSSSRK 120

Query: 121 TGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPVSA 180
           TGWVMHEYRLLLSP+Q   PTPPS VINN EKWVVCRIFCNNSGIKNDLHFHPLQ PVSA
Sbjct: 121 TGWVMHEYRLLLSPTQ--PPTPPSVVINNMEKWVVCRIFCNNSGIKNDLHFHPLQCPVSA 180

Query: 181 STNDDTNALSDDXXXXXXXXXXXXXXXXMPFPNHHSSASN 221
           STND        XXXXXXXXXXXXXXXX PFPNHHSSASN
Sbjct: 181 STNDXXXXXXXXXXXXXXXXXXXXXXXXXPFPNHHSSASN 218

[Close]

BLAST of Carg10259 vs. TAIR10
Match: AT5G13180.1 (NAC domain containing protein 83)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-32
Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV +YLK KV S  LPASIIPE    VC  DPWD+P   G  E++ Y
Sbjct: 14  LPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEF--DVCRADPWDLP---GNLEKERY 73

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K    +R  R + SGYWKA G ++++V+S  + +  VG++KTL+F+ G     
Sbjct: 74  FFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQI--VGLKKTLVFYKGKPPHG 133

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIF 160
            +T W+MHEYRL  SP  +  PT         + WV+CRIF
Sbjct: 134 SRTDWIMHEYRLSSSPPSSMGPT---------QNWVLCRIF 158

[Close]

BLAST of Carg10259 vs. TAIR10
Match: AT2G33480.1 (NAC domain containing protein 41)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-29
Identity = 71/161 (44.10%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV +YL+ KV    LPAS+IPE  T VC  DPWD+P   G  E + Y
Sbjct: 15  LPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPE--TDVCKSDPWDLP---GDCESEMY 74

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K    +R  R + SGYWKA G +++I         +VGM+KTL+F+ G   + 
Sbjct: 75  FFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKKL----VVGMKKTLVFYKGKPPNG 134

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIF 160
            +T WV+HEYRL+ S           ++   N  WV+CR+F
Sbjct: 135 TRTNWVLHEYRLVDSQQ--------DSLYGQNMNWVLCRVF 158

[Close]

BLAST of Carg10259 vs. TAIR10
Match: AT3G15510.1 (NAC domain containing protein 2)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 70/187 (37.43%), Postives = 98/187 (52.41%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV  YLK K  S  LP +II E+   +   DPW++P      E++ Y
Sbjct: 17  LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEV--DLYKFDPWELPAKASFGEQEWY 76

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K     R  R + SGYWKA G+++ ++  +SD    VG++K L+F+ G     
Sbjct: 77  FFSPRDRKYPNGARPNRAATSGYWKATGTDKPVL--ASDGNQKVGVKKALVFYSGKPPKG 136

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNN------EKWVVCRIFCNNSG---IKNDL 177
            K+ W+MHEYRL+      P   PP     N       + WV+CRI+  N+    + ND 
Sbjct: 137 VKSDWIMHEYRLI---ENKPNNRPPGCDFGNKKNSLRLDDWVLCRIYKKNNASRHVDNDK 196

[Close]

BLAST of Carg10259 vs. TAIR10
Match: AT1G61110.1 (NAC domain containing protein 25)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-26
Identity = 70/169 (41.42%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV  YLK K  S  LP SII EI   +   DPW++P      E + Y
Sbjct: 16  LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEI--DLYKFDPWELPSKASFGEHEWY 75

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K     R  R + SGYWKA G+++ I + +S     VG++K L+F+ G     
Sbjct: 76  FFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK---VGVKKALVFYGGKPPKG 135

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNN----EKWVVCRIFCNNS 164
            KT W+MHEYRL      T    P       N    + WV+CRI+  NS
Sbjct: 136 IKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNS 179

[Close]

BLAST of Carg10259 vs. TAIR10
Match: AT3G18400.1 (NAC domain containing protein 58)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 67/190 (35.26%), Postives = 94/190 (49.47%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EEL+  YL  KV         + ++  + C  +PWD+P      E++ Y
Sbjct: 5   LPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDVDLNKC--EPWDLPAKASMGEKEWY 64

Query: 64  LFSKNQECD----RRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMG-SSSS 123
            FS+         R  R + +GYWK  G +++I  S      LVGM+KTL+F+ G +   
Sbjct: 65  FFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGV----LVGMKKTLVFYKGRAPKG 124

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKNDLHFHPLQYPV 183
            K+ WVMHEYRL       PT         N E+WVVCR+F  ++  K      P     
Sbjct: 125 EKSNWVMHEYRLESKQPFNPT---------NKEEWVVCRVFEKSTAAKKAQEQQPQSSQP 179

Query: 184 SASTNDDTNA 189
           S  +  D N+
Sbjct: 185 SFGSPCDANS 179

[Close]

BLAST of Carg10259 vs. Swiss-Prot
Match: sp|Q9FY93|NAC83_ARATH (NAC domain-containing protein 83 OS=Arabidopsis thaliana OX=3702 GN=NAC083 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-31
Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV +YLK KV S  LPASIIPE    VC  DPWD+P   G  E++ Y
Sbjct: 14  LPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEF--DVCRADPWDLP---GNLEKERY 73

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K    +R  R + SGYWKA G ++++V+S  + +  VG++KTL+F+ G     
Sbjct: 74  FFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQI--VGLKKTLVFYKGKPPHG 133

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIF 160
            +T W+MHEYRL  SP  +  PT         + WV+CRIF
Sbjct: 134 SRTDWIMHEYRLSSSPPSSMGPT---------QNWVLCRIF 158

[Close]

BLAST of Carg10259 vs. Swiss-Prot
Match: sp|O22798|NAC41_ARATH (NAC domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=NAC041 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.4e-28
Identity = 71/161 (44.10%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV +YL+ KV    LPAS+IPE  T VC  DPWD+P   G  E + Y
Sbjct: 15  LPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPE--TDVCKSDPWDLP---GDCESEMY 74

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K    +R  R + SGYWKA G +++I         +VGM+KTL+F+ G   + 
Sbjct: 75  FFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKKL----VVGMKKTLVFYKGKPPNG 134

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIF 160
            +T WV+HEYRL+ S           ++   N  WV+CR+F
Sbjct: 135 TRTNWVLHEYRLVDSQQ--------DSLYGQNMNWVLCRVF 158

[Close]

BLAST of Carg10259 vs. Swiss-Prot
Match: sp|Q9LD44|NAC56_ARATH (NAC transcription factor 56 OS=Arabidopsis thaliana OX=3702 GN=NAC056 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-25
Identity = 70/187 (37.43%), Postives = 98/187 (52.41%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV  YLK K  S  LP +II E+   +   DPW++P      E++ Y
Sbjct: 17  LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEV--DLYKFDPWELPAKASFGEQEWY 76

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K     R  R + SGYWKA G+++ ++  +SD    VG++K L+F+ G     
Sbjct: 77  FFSPRDRKYPNGARPNRAATSGYWKATGTDKPVL--ASDGNQKVGVKKALVFYSGKPPKG 136

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNN------EKWVVCRIFCNNSG---IKNDL 177
            K+ W+MHEYRL+      P   PP     N       + WV+CRI+  N+    + ND 
Sbjct: 137 VKSDWIMHEYRLI---ENKPNNRPPGCDFGNKKNSLRLDDWVLCRIYKKNNASRHVDNDK 196

[Close]

BLAST of Carg10259 vs. Swiss-Prot
Match: sp|Q8GY42|NAC25_ARATH (NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.5e-25
Identity = 70/169 (41.42%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV  YLK K  S  LP SII EI   +   DPW++P      E + Y
Sbjct: 16  LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEI--DLYKFDPWELPSKASFGEHEWY 75

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K     R  R + SGYWKA G+++ I + +S     VG++K L+F+ G     
Sbjct: 76  FFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK---VGVKKALVFYGGKPPKG 135

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNN----EKWVVCRIFCNNS 164
            KT W+MHEYRL      T    P       N    + WV+CRI+  NS
Sbjct: 136 IKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNS 179

[Close]

BLAST of Carg10259 vs. Swiss-Prot
Match: sp|A0SPJ6|NAMB2_TRITD (NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum OX=4567 GN=NAM-B2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-24
Identity = 66/167 (39.52%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF PT+EELV  YLK K     LP +II E+   +   DPW++P      E++ Y
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEV--DLYKFDPWELPEKATFGEQEWY 87

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS-SSS 123
            FS    K     R  R + SGYWKA G+++ I++S       VG++K L+F+ G     
Sbjct: 88  FFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGR-EKVGVKKALVFYRGKPPKG 147

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNN------EKWVVCRIF 160
            KT W+MHEYRL  + S   T  PP     +       + WV+CRI+
Sbjct: 148 LKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIY 191

[Close]

BLAST of Carg10259 vs. TrEMBL
Match: tr|A0A1U8L6E2|A0A1U8L6E2_GOSHI (NAC domain-containing protein 83-like OS=Gossypium hirsutum OX=3635 GN=LOC107923249 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.4e-35
Identity = 82/176 (46.59%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           +R LPPGFRF+PTEEELVF+YLKCK FSF LPASIIP++  ++CN DPWD+PG  G   E
Sbjct: 9   LRKLPPGFRFQPTEEELVFQYLKCKAFSFPLPASIIPDL--NICNFDPWDLPGDLG---E 68

Query: 61  DTYLFSKNQ---ECDRRVRW-SPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS- 120
           + Y FS  +   +   R+ W + SGYWKA GS+++I+S  +    + GMRKTL+F MG  
Sbjct: 69  ERYFFSVKEAKYKIGNRINWATASGYWKATGSDKQIISRRNQ---VAGMRKTLVFHMGKP 128

Query: 121 SSSRKTGWVMHEYRLLLSP----SQTPTPTPPSAVINNNEKWVVCRIFCNNSGIKN 168
               +T W+MHEYRL+  P    +    P   + + +  EKWV+C +F   +  K+
Sbjct: 129 PHGLRTDWIMHEYRLVNVPNNDFNSANNPMMQNYLNHGMEKWVLCHVFLKRTSKKS 176

[Close]

BLAST of Carg10259 vs. TrEMBL
Match: tr|A0A0D2QLE9|A0A0D2QLE9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G043900 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.8e-35
Identity = 84/176 (47.73%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           +R LPPGFRF+PTEEELVF+YLKCK FSF LPASIIP++  ++CN DPWD+PG  G   E
Sbjct: 9   LRKLPPGFRFQPTEEELVFQYLKCKAFSFPLPASIIPDL--NICNFDPWDLPGELG---E 68

Query: 61  DTYLFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGS- 120
           + Y FS    K +  +R  R + SGYWKA GS++KI+S  +    + GMRKTL+F MG  
Sbjct: 69  ERYFFSMKEAKYKTGNRINRATASGYWKATGSDKKIISRRNQ---VAGMRKTLVFHMGKP 128

Query: 121 SSSRKTGWVMHEYRLLLSPSQ----TPTPTPPSAVINNNEKWVVCRIFCNNSGIKN 168
               +T W+MHEYRL+  P+        P   + + +  EKWV+C +F   +  K+
Sbjct: 129 PHGLRTDWIMHEYRLVNVPNNDFNLANNPMMQNYLNHEMEKWVLCHVFLKKTSKKS 176

[Close]

BLAST of Carg10259 vs. TrEMBL
Match: tr|A0A2K1YBR1|A0A2K1YBR1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G103500v3 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.8e-35
Identity = 89/176 (50.57%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 1   MRGLPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEE 60
           M GLPPGFRF+PTEEELVF+YLK K+ S+ LPAS+IPE+  +VC  DPW++P   G  E+
Sbjct: 11  MSGLPPGFRFQPTEEELVFQYLKRKILSWPLPASVIPEV--NVCKYDPWELP---GDMEQ 70

Query: 61  DTYLFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSS 120
           + Y FS    K    +R  R S SGYWKA G +R+IVSSS     +VGM+KTL+F+ G +
Sbjct: 71  ERYFFSNKEAKYPNGNRVNRASSSGYWKATGLDRQIVSSSWKNNHVVGMKKTLVFYRGKA 130

Query: 121 -SSRKTGWVMHEYRLLLSPSQTPTPTPP----SAVINNN---EKWVVCRIFCNNSG 165
               +T WVMHEYRL+    +T     P    SA  N++   +KWVVCRIF  N G
Sbjct: 131 PHGSRTDWVMHEYRLVNLGVETTDSNFPQTENSAQQNSSFQMDKWVVCRIFLKNKG 181

[Close]

BLAST of Carg10259 vs. TrEMBL
Match: tr|G7J3B8|G7J3B8_MEDTR (NAC transcription factor-like protein OS=Medicago truncatula OX=3880 GN=11429693 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 85/170 (50.00%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGF F+PT+EELVF YLKCK+FS+ LPASIIPEI  +VC  DPWD+PG  G  E+D Y
Sbjct: 14  LPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEI--NVCKFDPWDLPGNCG--EQDKY 73

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSS-SS 123
            FS    K +  +R  R + SGYWKA GS++K+  SSS + G+ G+RK+L+F+ G S + 
Sbjct: 74  FFSSKEAKYRNSNRMNRTTSSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPNG 133

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFC-NNSGIKN 168
            +T W+MHEYRL+     T          N    WV+CRIF    S I+N
Sbjct: 134 SRTHWIMHEYRLV--SLGTTACNQLQNYANEIGNWVLCRIFTKKRSNIEN 177

[Close]

BLAST of Carg10259 vs. TrEMBL
Match: tr|A0A1J7IGK3|A0A1J7IGK3_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06470 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.9e-34
Identity = 82/167 (49.10%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 4   LPPGFRFEPTEEELVFEYLKCKVFSFALPASIIPEITTSVCNLDPWDIPGGGGGWEEDTY 63
           LPPGFRF+PT+EELVF+YLKCKVFS+ LPASIIPEI  +VC  DPWD+PG     E++ Y
Sbjct: 14  LPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEI--NVCKYDPWDLPGNCD--EQERY 73

Query: 64  LFS----KNQECDRRVRWSPSGYWKAKGSERKIVSSSSDAVGLVGMRKTLLFWMGSS-SS 123
            FS    K    +R  R + SGYWKA G++++I SS+S   G+VG RKTL+F+ G S + 
Sbjct: 74  FFSSKETKYPNGNRMNRTTNSGYWKATGTDKRISSSTSTCDGVVGTRKTLVFYEGKSPNG 133

Query: 124 RKTGWVMHEYRLLLSPSQTPTPTPPSAVINNNEKWVVCRIFCNNSGI 166
            +T WV+HEYRLL         T  +  +N    WV+CR+      +
Sbjct: 134 SRTHWVLHEYRLL---------TIENNYVNEIGDWVLCRLLMKKRSV 167

The following BLAST results are available for this feature:

BLAST of Carg10259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516924.1	3.3e-111	96.36	NAC domain-containing protein 83-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022988606.1	6.3e-110	95.45	NAC domain-containing protein 83-like isoform X1 [Cucurbita maxima]	[more]
XP_023516925.1	4.1e-109	95.91	NAC domain-containing protein 83-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022988607.1	7.7e-108	95.00	NAC domain-containing protein 83-like isoform X2 [Cucurbita maxima]	[more]
XP_022921430.1	3.3e-103	91.36	NAC domain-containing protein 83 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg10259 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13180.1	1.7e-32	47.20	NAC domain containing protein 83	[more]
AT2G33480.1	3.0e-29	44.10	NAC domain containing protein 41	[more]
AT3G15510.1	1.4e-26	37.43	NAC domain containing protein 2	[more]
AT1G61110.1	5.3e-26	41.42	NAC domain containing protein 25	[more]
AT3G18400.1	3.4e-25	35.26	NAC domain containing protein 58	[more]

BLAST of Carg10259 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FY93\|NAC83_ARATH	3.0e-31	47.20	NAC domain-containing protein 83 OS=Arabidopsis thaliana OX=3702 GN=NAC083 PE=1 ...	[more]
sp\|O22798\|NAC41_ARATH	5.4e-28	44.10	NAC domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=NAC041 PE=2 ...	[more]
sp\|Q9LD44\|NAC56_ARATH	2.5e-25	37.43	NAC transcription factor 56 OS=Arabidopsis thaliana OX=3702 GN=NAC056 PE=2 SV=1	[more]
sp\|Q8GY42\|NAC25_ARATH	9.5e-25	41.42	NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1	[more]
sp\|A0SPJ6\|NAMB2_TRITD	3.6e-24	39.52	NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum OX=4567 GN=NAM...	[more]

BLAST of Carg10259 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1U8L6E2\|A0A1U8L6E2_GOSHI	3.4e-35	46.59	NAC domain-containing protein 83-like OS=Gossypium hirsutum OX=3635 GN=LOC107923...	[more]
tr\|A0A0D2QLE9\|A0A0D2QLE9_GOSRA	5.8e-35	47.73	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G043900 PE=4 ...	[more]
tr\|A0A2K1YBR1\|A0A2K1YBR1_POPTR	9.8e-35	50.57	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G103500v3 PE=...	[more]
tr\|G7J3B8\|G7J3B8_MEDTR	1.3e-34	50.00	NAC transcription factor-like protein OS=Medicago truncatula OX=3880 GN=11429693...	[more]
tr\|A0A1J7IGK3\|A0A1J7IGK3_LUPAN	2.9e-34	49.10	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06470 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR036093	NAC_dom_sf
IPR003441	NAC-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10259-RA	Carg10259-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 5..130 e-value: 1.1E-25 score: 90.8
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 4..161 score: 39.654
IPR036093	NAC domain superfamily	GENE3D	G3DSA:3.30.310.150		coord: 13..167 e-value: 1.4E-32 score: 114.6
IPR036093	NAC domain superfamily	SUPERFAMILY	SSF101941	NAC domain	coord: 2..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..220
None	No IPR available	PANTHER	PTHR44426	FAMILY NOT NAMED	coord: 3..185

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10259	Cla019304	Watermelon (97103) v1	carwmB0356
Carg10259	Csa1G000770	Cucumber (Chinese Long) v2	carcuB0391
Carg10259	MELO3C026180	Melon (DHL92) v3.5.1	carmeB0369
Carg10259	ClCG06G018160	Watermelon (Charleston Gray)	carwcgB0357
Carg10259	CSPI01G00270	Wild cucumber (PI 183967)	carcpiB0396
Carg10259	Cucsa.157080	Cucumber (Gy14) v1	carcgyB0422
Carg10259	CmaCh11G000110	Cucurbita maxima (Rimu)	carcmaB0511
Carg10259	CmaCh10G000370	Cucurbita maxima (Rimu)	carcmaB0510
Carg10259	CmoCh11G000100	Cucurbita moschata (Rifu)	carcmoB0494
Carg10259	CmoCh10G000330	Cucurbita moschata (Rifu)	carcmoB0493
Carg10259	Cp4.1LG18g09070	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10259	Cp4.1LG04g16220	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10259	CsGy1G000270	Cucumber (Gy14) v2	carcgybB0371
Carg10259	MELO3C026180.2	Melon (DHL92) v3.6.1	carmedB0375
Carg10259	CsaV3_1G000260	Cucumber (Chinese Long) v3	carcucB0395
Carg10259	Cla97C06G127940	Watermelon (97103) v2	carwmbB0382
Carg10259	Bhi02G000490	Wax gourd	carwgoB0448

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg10259	Carg11576	Silver-seed gourd	carcarB012
Carg10259	Carg24557	Silver-seed gourd	carcarB391

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10259	Wild cucumber (PI 183967)	carcpiB0398
Carg10259	Cucumber (Chinese Long) v2	carcuB0393
Carg10259	Cucumber (Chinese Long) v3	carcucB0397
Carg10259	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10259	Melon (DHL92) v3.5.1	carmeB0366
Carg10259	Melon (DHL92) v3.6.1	carmedB0372
Carg10259	Watermelon (Charleston Gray)	carwcgB0356
Carg10259	Watermelon (97103) v1	carwmB0354
Carg10259	Watermelon (97103) v2	carwmbB0379
Carg10259	Wax gourd	carwgoB0445
Carg10259	Silver-seed gourd	carcarB387
Carg10259	Silver-seed gourd	carcarB388
Carg10259	Silver-seed gourd	carcarB390
Carg10259	Silver-seed gourd	carcarB395
Carg10259	Cucumber (Gy14) v2	carcgybB0373
Carg10259	Cucurbita maxima (Rimu)	carcmaB0513
Carg10259	Cucurbita maxima (Rimu)	carcmaB0516
Carg10259	Cucurbita moschata (Rifu)	carcmoB0495
Carg10259	Cucurbita moschata (Rifu)	carcmoB0500
Carg10259	Cucurbita pepo (Zucchini)	carcpeB0507
Carg10259	Cucurbita pepo (Zucchini)	carcpeB0513