Carg09295 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09295
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear transcription factor Y subunit C
Location	Cucurbita_argyrosperma_scaffold_018 : 439781 .. 440203 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG

mRNA sequence

ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG

Coding sequence (CDS)

ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG

Protein sequence

MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

Homology

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BLAST of Carg09295 vs. NCBI nr
Match: XP_022997291.1 (DNA polymerase epsilon subunit C [Cucurbita maxima])

HSP 1 Score: 260.8 bits (665), Expect = 2.7e-66
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KTASAETNET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

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BLAST of Carg09295 vs. NCBI nr
Match: XP_022962477.1 (DNA polymerase epsilon subunit C [Cucurbita moschata])

HSP 1 Score: 260.4 bits (664), Expect = 3.6e-66
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KTASAETNET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Carg09295 vs. NCBI nr
Match: XP_023547243.1 (putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 3.9e-65
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E G+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRPAKTASAE NET
Sbjct: 121 RIDDFFRRPAKTASAEINET 140

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BLAST of Carg09295 vs. NCBI nr
Match: XP_008445504.1 (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 123/140 (87.86%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA AK ENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

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BLAST of Carg09295 vs. NCBI nr
Match: XP_004144200.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus] >KGN47612.1 hypothetical protein Csa_6G365140 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAPAK ENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

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BLAST of Carg09295 vs. TAIR10
Match: AT5G43250.1 (nuclear factor Y, subunit C13)

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-37
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 3   EEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEK 62
           EEE G +IRPEFP+GR+KKIMKLDKDI K+NSEAL +++ +TELFL  LAEKS+ V AEK
Sbjct: 2   EEEEG-SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEK 61

Query: 63  KRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDK---VAPEGT 122
           KRKTV L+H+RIAVKRHQ  SDFLLDSLPLP+QP          T+ V DK     P GT
Sbjct: 62  KRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQP-------VKHTKSVSDKKIPAPPIGT 121

Query: 123 RRIDDFFRR-PAKTASA 136
           RRIDDFF +  AKT SA
Sbjct: 122 RRIDDFFSKGKAKTDSA 130

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BLAST of Carg09295 vs. TAIR10
Match: AT1G07980.1 (nuclear factor Y, subunit C10)

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-09
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 3   EEEPGDA--IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 62
           EE+ G A   + +FPM RI++IM+ D    ++  +A+FLV+ ATE+F+E  +E++ + + 
Sbjct: 97  EEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSV 156

Query: 63  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVD 113
           + K+K +  +H+   V   Q   +FL DS+P   +   A A +E   R + D
Sbjct: 157 KDKKKFIHYKHLSSVVSNDQRY-EFLADSVP---EKLKAEAALEEWERGMTD 204

[Close]

BLAST of Carg09295 vs. TAIR10
Match: AT3G12480.1 (nuclear factor Y, subunit C11)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68

Query: 74 IAVKRHQSISDFL 87
            V+R+ ++ DFL
Sbjct: 69 HCVERY-NVFDFL 80

[Close]

BLAST of Carg09295 vs. TAIR10
Match: AT3G48590.1 (nuclear factor Y, subunit C1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 4   EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKK 63
           E+  D    + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E K
Sbjct: 56  EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 115

Query: 64  RKTVKLEHIRIAVKRHQSISDFLLDSLP 92
           R+T++   I  A+ R   I DFL+D +P
Sbjct: 116 RRTLQKNDIAAAITR-TDIFDFLVDIVP 142

[Close]

BLAST of Carg09295 vs. TAIR10
Match: AT5G63470.1 (nuclear factor Y, subunit C4)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 4   EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKK 63
           E+  D    + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E K
Sbjct: 69  EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 128

Query: 64  RKTVKLEHIRIAVKRHQSISDFLLDSLP 92
           R+T++   I  A+ R   I DFL+D +P
Sbjct: 129 RRTLQKNDIAAAITR-TDIFDFLVDIVP 155

[Close]

BLAST of Carg09295 vs. Swiss-Prot
Match: sp|Q54DA1|NC2A_DICDI (Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-07
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 11 RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLE 70
          + +FPM RIKKIM+ D+++GK+ S    L+S   ELF+  L  K+ ++   KK K + + 
Sbjct: 6  KTKFPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVN 65

Query: 71 HIRIAVKRHQSISDFLLD 89
          H++  +K+ +S  DFL +
Sbjct: 66 HLKECIKQ-ESTFDFLTE 82

[Close]

BLAST of Carg09295 vs. Swiss-Prot
Match: sp|Q2YDP3|NC2A_BOVIN (Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295 vs. Swiss-Prot
Match: sp|Q14919|NC2A_HUMAN (Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295 vs. Swiss-Prot
Match: sp|Q9D6N5|NC2A_MOUSE (Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295 vs. Swiss-Prot
Match: sp|A0JPP1|NC2A_RAT (Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295 vs. TrEMBL
Match: tr|A0A1S3BDL4|A0A1S3BDL4_CUCME (dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.8e-59
Identity = 123/140 (87.86%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA AK ENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Carg09295 vs. TrEMBL
Match: tr|A0A0A0KGV1|A0A0A0KGV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365140 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.1e-58
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAPAK ENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

[Close]

BLAST of Carg09295 vs. TrEMBL
Match: tr|A0A2N9HE56|A0A2N9HE56_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38344 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-44
Identity = 97/133 (72.93%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEE  + IRPEFP GR+K+IMKLDKDI KVNSEALFLVS + ELFL  LAEKS+EVA 
Sbjct: 1   MAEEENTETIRPEFPTGRVKRIMKLDKDINKVNSEALFLVSYSAELFLHFLAEKSAEVAT 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRK VKLEH+R+AVKRHQ  S+FLLDSLP+PSQPSD PA  +NRTR V +K  P GTR
Sbjct: 61  EKKRKIVKLEHMRVAVKRHQPTSEFLLDSLPMPSQPSDRPATDQNRTRPVSEKPLPAGTR 120

Query: 121 RIDDFFRRPAKTA 134
           RIDDFF +PA  A
Sbjct: 121 RIDDFFHKPANEA 133

[Close]

BLAST of Carg09295 vs. TrEMBL
Match: tr|A0A2P5EBH0|A0A2P5EBH0_9ROSA (Nuclear transcription factor Y subunit C OS=Trema orientalis OX=63057 GN=TorNFYC6 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 96/139 (69.06%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEE    IRPEFP GR+KKIMKLD+DI KVNSEALFL+SC+T+LFL  LAE+S++VA 
Sbjct: 1   MAEEEEETMIRPEFPNGRVKKIMKLDQDIKKVNSEALFLISCSTQLFLGFLAERSADVAT 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRK VKLEH+R AVKRHQ  SDFLLDSLP PSQPSD P    NR+  V +K  P GTR
Sbjct: 61  EKKRKVVKLEHVRAAVKRHQPTSDFLLDSLPPPSQPSDHPPSDRNRSVPVAEKPVPAGTR 120

Query: 121 RIDDFFRRPAKTASAETNE 140
           RIDDFFR+PA  A  E +E
Sbjct: 121 RIDDFFRKPANEAPIEIDE 139

[Close]

BLAST of Carg09295 vs. TrEMBL
Match: tr|A0A2P5BPF7|A0A2P5BPF7_PARAD (Nuclear transcription factor Y subunit C OS=Parasponia andersonii OX=3476 GN=PanNFYC6 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 96/139 (69.06%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEE    IRPEFP GR+KKIMKLD+DI KVNSEALFL+SC+T+LFL  LAE+S++VA 
Sbjct: 1   MAEEEEETMIRPEFPNGRVKKIMKLDQDIKKVNSEALFLISCSTQLFLGFLAERSADVAT 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRK VKLEHIR AVKRHQ  SDFLLDS PLPSQPSD P    NR+R V +K  P G R
Sbjct: 61  EKKRKVVKLEHIRAAVKRHQPTSDFLLDSFPLPSQPSDHPPSDRNRSRPVAEKPVPAGIR 120

Query: 121 RIDDFFRRPAKTASAETNE 140
           RIDDFFR  A  A  E +E
Sbjct: 121 RIDDFFRMQANEAPIEIDE 139

The following BLAST results are available for this feature:

BLAST of Carg09295 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997291.1	2.7e-66	97.14	DNA polymerase epsilon subunit C [Cucurbita maxima]	[more]
XP_022962477.1	3.6e-66	97.14	DNA polymerase epsilon subunit C [Cucurbita moschata]	[more]
XP_023547243.1	3.9e-65	96.43	putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo]	[more]
XP_008445504.1	4.2e-59	87.86	PREDICTED: dr1-associated corepressor [Cucumis melo]	[more]
XP_004144200.1	4.7e-58	89.05	PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus] >KGN47612.1 hypoth...	[more]

BLAST of Carg09295 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43250.1	1.4e-37	64.96	nuclear factor Y, subunit C13	[more]
AT1G07980.1	4.9e-09	33.04	nuclear factor Y, subunit C10	[more]
AT3G12480.1	1.1e-08	42.47	nuclear factor Y, subunit C11	[more]
AT3G48590.1	2.4e-08	39.77	nuclear factor Y, subunit C1	[more]
AT5G63470.1	2.4e-08	39.77	nuclear factor Y, subunit C4	[more]

BLAST of Carg09295 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54DA1\|NC2A_DICDI	2.0e-07	37.18	Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1...	[more]
sp\|Q2YDP3\|NC2A_BOVIN	3.3e-07	41.33	Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1	[more]
sp\|Q14919\|NC2A_HUMAN	3.3e-07	41.33	Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3	[more]
sp\|Q9D6N5\|NC2A_MOUSE	3.3e-07	41.33	Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3	[more]
sp\|A0JPP1\|NC2A_RAT	3.3e-07	41.33	Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1	[more]

BLAST of Carg09295 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDL4\|A0A1S3BDL4_CUCME	2.8e-59	87.86	dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1	[more]
tr\|A0A0A0KGV1\|A0A0A0KGV1_CUCSA	3.1e-58	89.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365140 PE=4 SV=1	[more]
tr\|A0A2N9HE56\|A0A2N9HE56_FAGSY	1.1e-44	72.93	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38344 PE=4 SV=1	[more]
tr\|A0A2P5EBH0\|A0A2P5EBH0_9ROSA	1.6e-43	69.06	Nuclear transcription factor Y subunit C OS=Trema orientalis OX=63057 GN=TorNFYC...	[more]
tr\|A0A2P5BPF7\|A0A2P5BPF7_PARAD	6.2e-43	69.06	Nuclear transcription factor Y subunit C OS=Parasponia andersonii OX=3476 GN=Pan...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09295-RA	Carg09295-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 1..91 e-value: 6.0E-24 score: 86.5
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 11..91
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..76 e-value: 4.0E-21 score: 75.0
None	No IPR available	PANTHER	PTHR10252:SF78	NUCLEAR FACTOR Y, SUBUNIT C13	coord: 5..129
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 5..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09295	Cla021993	Watermelon (97103) v1	carwmB0134
Carg09295	MELO3C011458	Melon (DHL92) v3.5.1	carmeB0142
Carg09295	ClCG08G010070	Watermelon (Charleston Gray)	carwcgB0138
Carg09295	Cucsa.056240	Cucumber (Gy14) v1	carcgyB0168
Carg09295	CmaCh05G004250	Cucurbita maxima (Rimu)	carcmaB0189
Carg09295	CmaCh12G000750	Cucurbita maxima (Rimu)	carcmaB0185
Carg09295	CmoCh12G000590	Cucurbita moschata (Rifu)	carcmoB0194
Carg09295	CmoCh05G004430	Cucurbita moschata (Rifu)	carcmoB0196
Carg09295	Lsi08G008620	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09295	Cp4.1LG11g03620	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09295	Cp4.1LG07g00750	Cucurbita pepo (Zucchini)	carcpeB0207
Carg09295	CsGy6G018760	Cucumber (Gy14) v2	carcgybB0156
Carg09295	Cla97C08G152900	Watermelon (97103) v2	carwmbB0150
Carg09295	Bhi04G001160	Wax gourd	carwgoB0174

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09295	Carg20448	Silver-seed gourd	carcarB162

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09295	Wax gourd	carwgoB0177
Carg09295	Silver-seed gourd	carcarB168
Carg09295	Wild cucumber (PI 183967)	carcpiB0163
Carg09295	Cucumber (Chinese Long) v2	carcuB0158
Carg09295	Cucumber (Chinese Long) v3	carcucB0166
Carg09295	Melon (DHL92) v3.6.1	carmedB0146