Lsi08G008620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G008620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nuclear transcription factor Y subunit C8
Location	chr08 : 17035733 .. 17036155 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG

mRNA sequence

ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG

Coding sequence (CDS)

ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG

Protein sequence

MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

Homology

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BLAST of Lsi08G008620 vs. Swiss-Prot
Match: NC2A_MOUSE (Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. Swiss-Prot
Match: NC2A_HUMAN (Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. Swiss-Prot
Match: NC2A_BOVIN (Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. Swiss-Prot
Match: NC2A_RAT (Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. TrEMBL
Match: A0A0A0KGV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365140 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 126/137 (91.97%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE A 
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

[Close]

BLAST of Lsi08G008620 vs. TrEMBL
Match: F6HGA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03550 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.8e-44
Identity = 92/140 (65.71%), Postives = 112/140 (80.00%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEE  EAI PE P GRVKK++KLD+DI KVNSEALFL+SC+TELFL+ LAE+SAE+A+
Sbjct: 1   MAEEEKSEAIMPELPLGRVKKLVKLDRDINKVNSEALFLISCSTELFLRFLAEQSAEIAI 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           +KKR+TVKLEH+RIAAK+HR   DFLLDSLP+PSQPS+ P  D  R +   +K  P GTR
Sbjct: 61  QKKRRTVKLEHLRIAAKKHRPTRDFLLDSLPVPSQPSDRPPADRIRPQPAAEKPLPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFR+P K   +E N+S
Sbjct: 121 RIDDFFRKPEKEKPSEVNDS 140

[Close]

BLAST of Lsi08G008620 vs. TrEMBL
Match: B9RMF4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1080560 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-40
Identity = 90/139 (64.75%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 2   EEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVE 61
           EEE + E IRPEFPTGRVKKIMKLDKDI KV S+ALFLVS +TELFL+LLAEKSAEVA E
Sbjct: 3   EEENTVETIRPEFPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATE 62

Query: 62  KKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRR 121
           +KRKT+KL+HIRIA KRH+   DFLLDSLP P++ S+  A ++NR+R + DK AP GTRR
Sbjct: 63  QKRKTIKLDHIRIAVKRHQPTSDFLLDSLPSPTESSDKLAAEKNRSRLIADKPAPPGTRR 122

Query: 122 IDDFFRRPAKTTSAETNES 141
           ID+ F + A     + N++
Sbjct: 123 IDEIFAKSANEAPIQINDN 141

[Close]

BLAST of Lsi08G008620 vs. TrEMBL
Match: A0A0D2PU79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G168300 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 88/143 (61.54%), Postives = 112/143 (78.32%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M E+E+ + IRPEFPT RVKKIMKLDKDI KVNSEALFLVSC+T LFL+ LAE++A+VA 
Sbjct: 1   MAEDEAVDPIRPEFPTARVKKIMKLDKDINKVNSEALFLVSCSTNLFLRFLAERTAQVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAK---DENRTRTVVDKVAPE 120
           EKK+KTVKL+H+R A KRHR   DFLLDSLP+P++ +++ A+   D +R+R V DK AP 
Sbjct: 61  EKKKKTVKLDHLRTAIKRHRPTSDFLLDSLPIPAESTQSVARSATDRDRSRPVADKSAPA 120

Query: 121 GTRRIDDFFRRPAKTTSAETNES 141
           GTRRID FFR+P      + N++
Sbjct: 121 GTRRIDLFFRKPENEAPIQINDA 143

[Close]

BLAST of Lsi08G008620 vs. TrEMBL
Match: B9GMJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13970g PE=4 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 8.6e-39
Identity = 87/129 (67.44%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 2   EEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVE 61
           E +      RPEFPTGR+K+IMKLDKD  KVN++ALFLVS +TELFL+ LAEKSAEVA+E
Sbjct: 6   ENKTETTTTRPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSAEVAIE 65

Query: 62  KKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRR 121
           KKRK VKL+HIR A KRH    DFLLDSLPLP+Q SE PA D    RTV DK AP GTRR
Sbjct: 66  KKRKIVKLDHIRAAVKRHHPTSDFLLDSLPLPAQSSEKPASDNTSARTVTDKPAPAGTRR 125

Query: 122 IDDFFRRPA 131
           ID FF + A
Sbjct: 126 IDQFFAKAA 134

[Close]

BLAST of Lsi08G008620 vs. TAIR10
Match: AT5G43250.1 (AT5G43250.1 nuclear factor Y, subunit C13)

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-36
Identity = 88/139 (63.31%), Postives = 102/139 (73.38%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA V  
Sbjct: 1   MEEEEG--SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDK---VAPE 120
           EKKRKTV L+H+RIA KRH+   DFLLDSLPLP+QP +        T++V DK     P 
Sbjct: 61  EKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQPVK-------HTKSVSDKKIPAPPI 120

Query: 121 GTRRIDDFFRR-PAKTTSA 136
           GTRRIDDFF +  AKT SA
Sbjct: 121 GTRRIDDFFSKGKAKTDSA 130

[Close]

BLAST of Lsi08G008620 vs. TAIR10
Match: AT3G12480.1 (AT3G12480.1 nuclear factor Y, subunit C11)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-08
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E+ +E+  KTV   H++
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68

Query: 74 IAAKRHRSIGDFL 87
             +R+ ++ DFL
Sbjct: 69 HCVERY-NVFDFL 80

[Close]

BLAST of Lsi08G008620 vs. TAIR10
Match: AT1G07980.1 (AT1G07980.1 nuclear factor Y, subunit C10)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 28/91 (30.77%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 2   EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 61
           EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ + +V
Sbjct: 97  EEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSV 156

Query: 62  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLP 92
           + K+K +  +H+       +   +FL DS+P
Sbjct: 157 KDKKKFIHYKHLSSVVSNDQRY-EFLADSVP 186

[Close]

BLAST of Lsi08G008620 vs. TAIR10
Match: AT5G19490.1 (AT5G19490.1 Histone superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-07
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 1


Query: 10  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKL 69
           ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +V + +  KTV  
Sbjct: 5   LQTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNA 64

Query: 70  EHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRT--RTVVD 113
            H++   +   ++ DFL D++        +  +D++ T  R VVD
Sbjct: 65  FHLKQCVQA-TNVFDFLRDTVAKVPDLGGSDTEDQSATKRRKVVD 108

[Close]

BLAST of Lsi08G008620 vs. TAIR10
Match: AT3G48590.1 (AT3G48590.1 nuclear factor Y, subunit C1)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 2   EEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVE 61
           E E+  +    + P  R+KKIMK D+D+  +++EA  L + A ELF+  L  +S   A E
Sbjct: 54  EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 113

Query: 62  KKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEA 100
            KR+T++   I  A  R   I DFL+D +P      EA
Sbjct: 114 NKRRTLQKNDIAAAITR-TDIFDFLVDIVPRDEIKDEA 150

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: gi|659089430|ref|XP_008445504.1| (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 130/140 (92.86%), Postives = 132/140 (94.29%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+A AKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: gi|449452907|ref|XP_004144200.1| (PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 126/137 (91.97%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE A 
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: gi|225425432|ref|XP_002271716.1| (PREDICTED: chromatin accessibility complex protein 1 [Vitis vinifera])

HSP 1 Score: 184.9 bits (468), Expect = 9.8e-44
Identity = 92/140 (65.71%), Postives = 112/140 (80.00%), Query Frame = 1


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEE  EAI PE P GRVKK++KLD+DI KVNSEALFL+SC+TELFL+ LAE+SAE+A+
Sbjct: 1   MAEEEKSEAIMPELPLGRVKKLVKLDRDINKVNSEALFLISCSTELFLRFLAEQSAEIAI 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           +KKR+TVKLEH+RIAAK+HR   DFLLDSLP+PSQPS+ P  D  R +   +K  P GTR
Sbjct: 61  QKKRRTVKLEHLRIAAKKHRPTRDFLLDSLPVPSQPSDRPPADRIRPQPAAEKPLPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFR+P K   +E N+S
Sbjct: 121 RIDDFFRKPEKEKPSEVNDS 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: gi|1009152915|ref|XP_015894354.1| (PREDICTED: nuclear transcription factor Y subunit gamma-like [Ziziphus jujuba])

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 97/139 (69.78%), Postives = 112/139 (80.58%), Query Frame = 1


Query: 2   EEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVE 61
           EEEE+G+ IRPEFP GRVKKIMKLD+DI KVNSEALFLVS + ELFL  LAE+SA+VAVE
Sbjct: 3   EEEETGK-IRPEFPNGRVKKIMKLDRDINKVNSEALFLVSSSAELFLGFLAERSAKVAVE 62

Query: 62  KKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRR 121
           KKRKTVKLEH+R+A KRHR   DFLLDSLPLP QPS+ PA + +R+R+V D  AP GTRR
Sbjct: 63  KKRKTVKLEHMRLAVKRHRPTSDFLLDSLPLPPQPSDQPATERSRSRSVADNSAPAGTRR 122

Query: 122 IDDFFRRPAKTTSAETNES 141
           IDDFF +P      + NES
Sbjct: 123 IDDFFHKPNNEAQVQINES 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: gi|255547732|ref|XP_002514923.1| (PREDICTED: negative cofactor 2 complex subunit alpha [Ricinus communis])

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-40
Identity = 90/139 (64.75%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 2   EEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVE 61
           EEE + E IRPEFPTGRVKKIMKLDKDI KV S+ALFLVS +TELFL+LLAEKSAEVA E
Sbjct: 3   EEENTVETIRPEFPTGRVKKIMKLDKDINKVTSDALFLVSRSTELFLRLLAEKSAEVATE 62

Query: 62  KKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRR 121
           +KRKT+KL+HIRIA KRH+   DFLLDSLP P++ S+  A ++NR+R + DK AP GTRR
Sbjct: 63  QKRKTIKLDHIRIAVKRHQPTSDFLLDSLPSPTESSDKLAAEKNRSRLIADKPAPPGTRR 122

Query: 122 IDDFFRRPAKTTSAETNES 141
           ID+ F + A     + N++
Sbjct: 123 IDEIFAKSANEAPIQINDN 141

The following BLAST results are available for this feature:

BLAST of Lsi08G008620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NC2A_MOUSE	8.1e-06	37.33	Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3	[more]
NC2A_HUMAN	8.1e-06	37.33	Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3	[more]
NC2A_BOVIN	8.1e-06	37.33	Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1	[more]
NC2A_RAT	8.1e-06	37.33	Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1	[more]

BLAST of Lsi08G008620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGV1_CUCSA	1.8e-60	91.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365140 PE=4 SV=1	[more]
F6HGA3_VITVI	6.8e-44	65.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03550 PE=4 SV=...	[more]
B9RMF4_RICCO	2.7e-40	64.75	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1080560 PE=4 SV=1	[more]
A0A0D2PU79_GOSRA	1.3e-39	61.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G168300 PE=4 SV=1	[more]
B9GMJ4_POPTR	8.6e-39	67.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13970g PE=4 SV=2	[more]

BLAST of Lsi08G008620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43250.1	1.6e-36	63.31	nuclear factor Y, subunit C13	[more]
AT3G12480.1	4.1e-08	39.73	nuclear factor Y, subunit C11	[more]
AT1G07980.1	2.0e-07	30.77	nuclear factor Y, subunit C10	[more]
AT5G19490.1	3.5e-07	32.38	Histone superfamily protein	[more]
AT3G48590.1	1.0e-06	36.73	nuclear factor Y, subunit C1	[more]

BLAST of Lsi08G008620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089430\|ref\|XP_008445504.1\|	1.2e-62	92.86	PREDICTED: dr1-associated corepressor [Cucumis melo]	[more]
gi\|449452907\|ref\|XP_004144200.1\|	2.6e-60	91.97	PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus]	[more]
gi\|225425432\|ref\|XP_002271716.1\|	9.8e-44	65.71	PREDICTED: chromatin accessibility complex protein 1 [Vitis vinifera]	[more]
gi\|1009152915\|ref\|XP_015894354.1\|	1.3e-43	69.78	PREDICTED: nuclear transcription factor Y subunit gamma-like [Ziziphus jujuba]	[more]
gi\|255547732\|ref\|XP_002514923.1\|	3.8e-40	64.75	PREDICTED: negative cofactor 2 complex subunit alpha [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G008620.1	Lsi08G008620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..75 score: 1.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 11..75 score: 2.6
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 14..88 score: 2.85
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 2..139 score: 4.5
None	No IPR available	PANTHER	PTHR10252:SF25	DNA POLYMERASE EPSILON SUBUNIT 4	coord: 2..139 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G008620	Cucsa.056240	Cucumber (Gy14) v1	cgylsiB045
Lsi08G008620	CmaCh12G000750	Cucurbita maxima (Rimu)	cmalsiB185
Lsi08G008620	CmaCh05G004250	Cucurbita maxima (Rimu)	cmalsiB737
Lsi08G008620	CmoCh05G004430	Cucurbita moschata (Rifu)	cmolsiB728
Lsi08G008620	CmoCh12G000590	Cucurbita moschata (Rifu)	cmolsiB182
Lsi08G008620	Cla021993	Watermelon (97103) v1	lsiwmB465
Lsi08G008620	MELO3C011458	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G008620	ClCG08G010070	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G008620	Cla97C08G152900	Watermelon (97103) v2	lsiwmbB444
Lsi08G008620	Bhi04G001160	Wax gourd	lsiwgoB606
Lsi08G008620	Cp4.1LG07g00750	Cucurbita pepo (Zucchini)	cpelsiB686
Lsi08G008620	Cp4.1LG11g03620	Cucurbita pepo (Zucchini)	cpelsiB098
Lsi08G008620	CsGy6G018760	Cucumber (Gy14) v2	cgyblsiB437
Lsi08G008620	Carg20448	Silver-seed gourd	carlsiB569
Lsi08G008620	Carg09295	Silver-seed gourd	carlsiB129

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G008620	Melon (DHL92) v3.6.1	lsimedB490
Lsi08G008620	Cucumber (Chinese Long) v3	cuclsiB500
Lsi08G008620	Wax gourd	lsiwgoB596
Lsi08G008620	Cucurbita maxima (Rimu)	cmalsiB192
Lsi08G008620	Cucurbita moschata (Rifu)	cmolsiB176
Lsi08G008620	Cucurbita pepo (Zucchini)	cpelsiB694
Lsi08G008620	Wild cucumber (PI 183967)	cpilsiB478
Lsi08G008620	Cucumber (Chinese Long) v2	culsiB470