Carg09295-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09295-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear transcription factor Y subunit C
Location	Cucurbita_argyrosperma_scaffold_018 : 439781 .. 440203 (-)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG

mRNA sequence

ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG

Coding sequence (CDS)

ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG

Protein sequence

MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

Homology

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BLAST of Carg09295-RA vs. NCBI nr
Match: XP_022997291.1 (DNA polymerase epsilon subunit C [Cucurbita maxima])

HSP 1 Score: 260.8 bits (665), Expect = 2.7e-66
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KTASAETNET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Carg09295-RA vs. NCBI nr
Match: XP_022962477.1 (DNA polymerase epsilon subunit C [Cucurbita moschata])

HSP 1 Score: 260.4 bits (664), Expect = 3.6e-66
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KTASAETNET
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Carg09295-RA vs. NCBI nr
Match: XP_023547243.1 (putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 3.9e-65
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAE+E G+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA
Sbjct: 1   MAEKESGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK ENRTRVVVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRPAKTASAE NET
Sbjct: 121 RIDDFFRRPAKTASAEINET 140

[Close]

BLAST of Carg09295-RA vs. NCBI nr
Match: XP_008445504.1 (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 123/140 (87.86%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA AK ENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Carg09295-RA vs. NCBI nr
Match: XP_004144200.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus] >KGN47612.1 hypothetical protein Csa_6G365140 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAPAK ENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

[Close]

BLAST of Carg09295-RA vs. TAIR10
Match: AT5G43250.1 (nuclear factor Y, subunit C13)

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-37
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 3   EEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEK 62
           EEE G +IRPEFP+GR+KKIMKLDKDI K+NSEAL +++ +TELFL  LAEKS+ V AEK
Sbjct: 2   EEEEG-SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEK 61

Query: 63  KRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDK---VAPEGT 122
           KRKTV L+H+RIAVKRHQ  SDFLLDSLPLP+QP          T+ V DK     P GT
Sbjct: 62  KRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQP-------VKHTKSVSDKKIPAPPIGT 121

Query: 123 RRIDDFFRR-PAKTASA 136
           RRIDDFF +  AKT SA
Sbjct: 122 RRIDDFFSKGKAKTDSA 130

[Close]

BLAST of Carg09295-RA vs. TAIR10
Match: AT1G07980.1 (nuclear factor Y, subunit C10)

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-09
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 3   EEEPGDA--IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 62
           EE+ G A   + +FPM RI++IM+ D    ++  +A+FLV+ ATE+F+E  +E++ + + 
Sbjct: 97  EEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSV 156

Query: 63  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVD 113
           + K+K +  +H+   V   Q   +FL DS+P   +   A A +E   R + D
Sbjct: 157 KDKKKFIHYKHLSSVVSNDQRY-EFLADSVP---EKLKAEAALEEWERGMTD 204

[Close]

BLAST of Carg09295-RA vs. TAIR10
Match: AT3G12480.1 (nuclear factor Y, subunit C11)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68

Query: 74 IAVKRHQSISDFL 87
            V+R+ ++ DFL
Sbjct: 69 HCVERY-NVFDFL 80

[Close]

BLAST of Carg09295-RA vs. TAIR10
Match: AT3G48590.1 (nuclear factor Y, subunit C1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 4   EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKK 63
           E+  D    + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E K
Sbjct: 56  EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 115

Query: 64  RKTVKLEHIRIAVKRHQSISDFLLDSLP 92
           R+T++   I  A+ R   I DFL+D +P
Sbjct: 116 RRTLQKNDIAAAITR-TDIFDFLVDIVP 142

[Close]

BLAST of Carg09295-RA vs. TAIR10
Match: AT5G63470.1 (nuclear factor Y, subunit C4)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 4   EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKK 63
           E+  D    + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E K
Sbjct: 69  EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 128

Query: 64  RKTVKLEHIRIAVKRHQSISDFLLDSLP 92
           R+T++   I  A+ R   I DFL+D +P
Sbjct: 129 RRTLQKNDIAAAITR-TDIFDFLVDIVP 155

[Close]

BLAST of Carg09295-RA vs. Swiss-Prot
Match: sp|Q54DA1|NC2A_DICDI (Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-07
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 11 RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLE 70
          + +FPM RIKKIM+ D+++GK+ S    L+S   ELF+  L  K+ ++   KK K + + 
Sbjct: 6  KTKFPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVN 65

Query: 71 HIRIAVKRHQSISDFLLD 89
          H++  +K+ +S  DFL +
Sbjct: 66 HLKECIKQ-ESTFDFLTE 82

[Close]

BLAST of Carg09295-RA vs. Swiss-Prot
Match: sp|Q2YDP3|NC2A_BOVIN (Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295-RA vs. Swiss-Prot
Match: sp|Q14919|NC2A_HUMAN (Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295-RA vs. Swiss-Prot
Match: sp|Q9D6N5|NC2A_MOUSE (Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295-RA vs. Swiss-Prot
Match: sp|A0JPP1|NC2A_RAT (Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-07
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIR 73
          FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAVKRHQSISDFLLD 89
            ++  Q   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Carg09295-RA vs. TrEMBL
Match: tr|A0A1S3BDL4|A0A1S3BDL4_CUCME (dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.8e-59
Identity = 123/140 (87.86%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAA
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA AK ENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTASAETNET 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Carg09295-RA vs. TrEMBL
Match: tr|A0A0A0KGV1|A0A0A0KGV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365140 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.1e-58
Identity = 122/137 (89.05%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AA
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAPAK ENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTASAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

[Close]

BLAST of Carg09295-RA vs. TrEMBL
Match: tr|A0A2N9HE56|A0A2N9HE56_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38344 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-44
Identity = 97/133 (72.93%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEE  + IRPEFP GR+K+IMKLDKDI KVNSEALFLVS + ELFL  LAEKS+EVA 
Sbjct: 1   MAEEENTETIRPEFPTGRVKRIMKLDKDINKVNSEALFLVSYSAELFLHFLAEKSAEVAT 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRK VKLEH+R+AVKRHQ  S+FLLDSLP+PSQPSD PA  +NRTR V +K  P GTR
Sbjct: 61  EKKRKIVKLEHMRVAVKRHQPTSEFLLDSLPMPSQPSDRPATDQNRTRPVSEKPLPAGTR 120

Query: 121 RIDDFFRRPAKTA 134
           RIDDFF +PA  A
Sbjct: 121 RIDDFFHKPANEA 133

[Close]

BLAST of Carg09295-RA vs. TrEMBL
Match: tr|A0A2P5EBH0|A0A2P5EBH0_9ROSA (Nuclear transcription factor Y subunit C OS=Trema orientalis OX=63057 GN=TorNFYC6 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 96/139 (69.06%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEE    IRPEFP GR+KKIMKLD+DI KVNSEALFL+SC+T+LFL  LAE+S++VA 
Sbjct: 1   MAEEEEETMIRPEFPNGRVKKIMKLDQDIKKVNSEALFLISCSTQLFLGFLAERSADVAT 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRK VKLEH+R AVKRHQ  SDFLLDSLP PSQPSD P    NR+  V +K  P GTR
Sbjct: 61  EKKRKVVKLEHVRAAVKRHQPTSDFLLDSLPPPSQPSDHPPSDRNRSVPVAEKPVPAGTR 120

Query: 121 RIDDFFRRPAKTASAETNE 140
           RIDDFFR+PA  A  E +E
Sbjct: 121 RIDDFFRKPANEAPIEIDE 139

[Close]

BLAST of Carg09295-RA vs. TrEMBL
Match: tr|A0A2P5BPF7|A0A2P5BPF7_PARAD (Nuclear transcription factor Y subunit C OS=Parasponia andersonii OX=3476 GN=PanNFYC6 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 96/139 (69.06%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 1   MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60
           MAEEE    IRPEFP GR+KKIMKLD+DI KVNSEALFL+SC+T+LFL  LAE+S++VA 
Sbjct: 1   MAEEEEETMIRPEFPNGRVKKIMKLDQDIKKVNSEALFLISCSTQLFLGFLAERSADVAT 60

Query: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVVVDKVAPEGTR 120
           EKKRK VKLEHIR AVKRHQ  SDFLLDS PLPSQPSD P    NR+R V +K  P G R
Sbjct: 61  EKKRKVVKLEHIRAAVKRHQPTSDFLLDSFPLPSQPSDHPPSDRNRSRPVAEKPVPAGIR 120

Query: 121 RIDDFFRRPAKTASAETNE 140
           RIDDFFR  A  A  E +E
Sbjct: 121 RIDDFFRMQANEAPIEIDE 139

The following BLAST results are available for this feature:

BLAST of Carg09295-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997291.1	2.7e-66	97.14	DNA polymerase epsilon subunit C [Cucurbita maxima]	[more]
XP_022962477.1	3.6e-66	97.14	DNA polymerase epsilon subunit C [Cucurbita moschata]	[more]
XP_023547243.1	3.9e-65	96.43	putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo]	[more]
XP_008445504.1	4.2e-59	87.86	PREDICTED: dr1-associated corepressor [Cucumis melo]	[more]
XP_004144200.1	4.7e-58	89.05	PREDICTED: DNA polymerase epsilon subunit C [Cucumis sativus] >KGN47612.1 hypoth...	[more]

BLAST of Carg09295-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43250.1	1.4e-37	64.96	nuclear factor Y, subunit C13	[more]
AT1G07980.1	4.9e-09	33.04	nuclear factor Y, subunit C10	[more]
AT3G12480.1	1.1e-08	42.47	nuclear factor Y, subunit C11	[more]
AT3G48590.1	2.4e-08	39.77	nuclear factor Y, subunit C1	[more]
AT5G63470.1	2.4e-08	39.77	nuclear factor Y, subunit C4	[more]

BLAST of Carg09295-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54DA1\|NC2A_DICDI	2.0e-07	37.18	Dr1-associated corepressor homolog OS=Dictyostelium discoideum OX=44689 GN=drap1...	[more]
sp\|Q2YDP3\|NC2A_BOVIN	3.3e-07	41.33	Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1	[more]
sp\|Q14919\|NC2A_HUMAN	3.3e-07	41.33	Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3	[more]
sp\|Q9D6N5\|NC2A_MOUSE	3.3e-07	41.33	Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3	[more]
sp\|A0JPP1\|NC2A_RAT	3.3e-07	41.33	Dr1-associated corepressor OS=Rattus norvegicus OX=10116 GN=Drap1 PE=2 SV=1	[more]

BLAST of Carg09295-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDL4\|A0A1S3BDL4_CUCME	2.8e-59	87.86	dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1	[more]
tr\|A0A0A0KGV1\|A0A0A0KGV1_CUCSA	3.1e-58	89.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365140 PE=4 SV=1	[more]
tr\|A0A2N9HE56\|A0A2N9HE56_FAGSY	1.1e-44	72.93	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38344 PE=4 SV=1	[more]
tr\|A0A2P5EBH0\|A0A2P5EBH0_9ROSA	1.6e-43	69.06	Nuclear transcription factor Y subunit C OS=Trema orientalis OX=63057 GN=TorNFYC...	[more]
tr\|A0A2P5BPF7\|A0A2P5BPF7_PARAD	6.2e-43	69.06	Nuclear transcription factor Y subunit C OS=Parasponia andersonii OX=3476 GN=Pan...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09295	Carg09295	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09295-RA.CDS.1	Carg09295-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09295-RA.exon.1	Carg09295-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09295-RA	Carg09295-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 1..91 e-value: 6.0E-24 score: 86.5
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 11..91
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..76 e-value: 4.0E-21 score: 75.0
None	No IPR available	PANTHER	PTHR10252:SF78	NUCLEAR FACTOR Y, SUBUNIT C13	coord: 5..129
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 5..129