Carg09203 (gene) Silver-seed gourd

Overview
NameCarg09203
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionglycine-rich RNA-binding protein 2, mitochondrial-like
LocationCucurbita_argyrosperma_scaffold_063 : 1065584 .. 1067259 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCCTAAGTAAGGTTGGAAATATTCTAAGGCAGGGTGCAAATAAGAGGATCGGATCGGATTTGCAGGCTCCCAGTTTATCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTCGGAGGTTCGATTAGAAAAGTTGTTTTTTTCTTTAAGGAACATTAAGTCGCCAATTTCTTTTTCTTTATATTGTGCTCGTACGCATGCTTATGATGCAGGTATTTCATTCAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGAGAAGTAGTTGAAGGTATATTACCATTCCCCAACTTGTTTACCATGTTTGCTTGAAGGTTATTTTAGAAGTATCTTTCTTCCAATTTTTAACATGGCTTATTTTTATTGTAAAATCAATTTATGTAAAGTTGCATGCTTTTGAACATTCCACAGCAGAGTAATACTAAGATTTATCTTTACACAACAAAAATGACCATGTAATAAACATACTTTTGGAACCCGTATGATGGAATCTGCTCAAGGGATTATGTTTCTCTGGAGGGTTGGAGCTGGATATTACTTGACGTGCTAGTGGAGTGTGTCAAGTCCGAATTTAGTAATAACTGTTGTTTTCCTTGTTTACACTGTTTTTTTCCTTGCCCCCGTGACAGCTAGGATCATTGTGGACCGCGAAACTGGAAGATCTAGAGGATTTGGATTTGTGACTTATACCTCCAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGTAATGATTCAGTTGTCGGCTCAATGTGATTAAAAAGGATGATGCATTGTTTTATATTCACATGCTTTTATATGCTGTAATCTGATTAAAACGGATGATGCAGTGTTAATTCAAGAACCGTCAGCTGTCTGCTTTCTTTTCCTTTTGACGATTGTGCTTTCATGTGACTTGTTTGGCCTTCGAATCTATTGAAACCAAGCATTATTTAGAATTAACTGCCTAATTTATGGCGATGCATTTTTTAGTTGATTTATTCGGGCTCTCAATATTTGCTCAGCTCAGAAAGTTCGATGACTTGATTTATTTTATTTCAAACAGGATCTTCATGGTCGTCGCGTTAGGGTGAATTATGCTAATGATAGAAGCCGTGGTGTGGGTGGTGGCGGCTATGGTGGTGGCGGCTATGGTGGTGGCGGCTATGGCGGTGGCGGGGGCTATGGTGGCGGTGGTGCTGGGGGCTATGGCGGTGGTGGGAGTGGAGGTTATGGTGATGGTAGTGGTGGATTCTCCACGACAGGATATAGTTCCGGTGGTAACTATTCGAACAATTTTGGCGGTGGTAGCCAAGGAAGTGGAGGAAACTATGGCAACGAGTTTGCCAGTGACAGCCGTGGAAGTGTTAGCACAGGTGGTGGCTTTGGTGGGAATGATGCTGGCTACAACGCCAGCAATTTTTCTGGTGGAGACAGCGGAAACTATAACGTCAGTGGCGGGGGCGGCGACTATTTTTCCAACCGTGGGTCTGAAGAAAGCTCTGGTTTTGGAGGATATACCGGTGGGGATCAATTTAGCAGCAAAGAAACAGACACCATGAATGCACCTGGAAGTGGCCTTGGGGAGCAACTCGAAGGAAATGATAGAGACGAAGACGACGACGCAAATGACTTCGCTAAAAGAGCCTGA

mRNA sequence

ATGGCTTTCCTAAGTAAGGTTGGAAATATTCTAAGGCAGGGTGCAAATAAGAGGATCGGATCGGATTTGCAGGCTCCCAGTTTATCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTCGGAGGTATTTCATTCAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGAGAAGATCTTCATGGTCGTCGCGTTAGGGTGAATTATGCTAATGATAGAAGCCGTGGTGTGGGTGGTGGCGGCTATGGTGGTGGCGGCTATGGTGGTGGCGGCTATGGCGGTGGCGGGGGCTATGGTGGCGGTGGTGCTGGGGGCTATGGCGGTGGTGGGAGTGGAGGTTATGGTGATGGTAGTGGTGGATTCTCCACGACAGGATATAGTTCCGGTGGTAACTATTCGAACAATTTTGGCGGTGGTAGCCAAGGAAGTGGAGGAAACTATGGCAACGAGTTTGCCAGTGACAGCCGTGGAAGTGTTAGCACAGGTGGTGGCTTTGGTGGGAATGATGCTGGCTACAACGCCAGCAATTTTTCTGGTGGAGACAGCGGAAACTATAACGTCAGTGGCGGGGGCGGCGACTATTTTTCCAACCGTGGGTCTGAAGAAAGCTCTGGTTTTGGAGGATATACCGGTGGGGATCAATTTAGCAGCAAAGAAACAGACACCATGAATGCACCTGGAAGTGGCCTTGGGGAGCAACTCGAAGGAAATGATAGAGACGAAGACGACGACGCAAATGACTTCGCTAAAAGAGCCTGA

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAATATTCTAAGGCAGGGTGCAAATAAGAGGATCGGATCGGATTTGCAGGCTCCCAGTTTATCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTCGGAGGTATTTCATTCAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGAGAAGATCTTCATGGTCGTCGCGTTAGGGTGAATTATGCTAATGATAGAAGCCGTGGTGTGGGTGGTGGCGGCTATGGTGGTGGCGGCTATGGTGGTGGCGGCTATGGCGGTGGCGGGGGCTATGGTGGCGGTGGTGCTGGGGGCTATGGCGGTGGTGGGAGTGGAGGTTATGGTGATGGTAGTGGTGGATTCTCCACGACAGGATATAGTTCCGGTGGTAACTATTCGAACAATTTTGGCGGTGGTAGCCAAGGAAGTGGAGGAAACTATGGCAACGAGTTTGCCAGTGACAGCCGTGGAAGTGTTAGCACAGGTGGTGGCTTTGGTGGGAATGATGCTGGCTACAACGCCAGCAATTTTTCTGGTGGAGACAGCGGAAACTATAACGTCAGTGGCGGGGGCGGCGACTATTTTTCCAACCGTGGGTCTGAAGAAAGCTCTGGTTTTGGAGGATATACCGGTGGGGATCAATTTAGCAGCAAAGAAACAGACACCATGAATGCACCTGGAAGTGGCCTTGGGGAGCAACTCGAAGGAAATGATAGAGACGAAGACGACGACGCAAATGACTTCGCTAAAAGAGCCTGA

Protein sequence

MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLREAFTKYGEDLHGRRVRVNYANDRSRGVGGGGYGGGGYGGGGYGGGGGYGGGGAGGYGGGGSGGYGDGSGGFSTTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDRDEDDDANDFAKRA
Homology
[Close]
BLAST of Carg09203 vs. NCBI nr
Match: XP_022971790.1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 254/301 (84.39%), Postives = 256/301 (85.05%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVGNILRQGANK+IGSDLQA SLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 120
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DRSRGVGG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 DRSRGVGG-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXRGSEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDRDEDDDANDFAKR 263
           XXXXXXRGSEESSGFGGYTGGDQFSSKETD+MNAPGSGLGEQLEGNDRDEDDDANDFAKR
Sbjct: 241 XXXXXXRGSEESSGFGGYTGGDQFSSKETDSMNAPGSGLGEQLEGNDRDEDDDANDFAKR 296

[Close]
BLAST of Carg09203 vs. NCBI nr
Match: XP_022933621.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata] >XP_022933622.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 259/308 (84.09%), Postives = 260/308 (84.42%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 120
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGVGG-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DRSRGVGG       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 DRSRGVGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXRGSEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDRDEDDD 263
           XXXXXXXXXXXXX  SEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDRDEDDD
Sbjct: 241 XXXXXXXXXXXXXXXSEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDRDEDDD 300

[Close]
BLAST of Carg09203 vs. NCBI nr
Match: XP_022971767.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971776.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971783.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-48
Identity = 259/313 (82.75%), Postives = 261/313 (83.39%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVGNILRQGANK+IGSDLQA SLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 120
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGVGG------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DRSRGVGG            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 DRSRGVGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXRGSEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDR 263
           XXXXXXXXXXXXXXXXXXRGSEESSGFGGYTGGDQFSSKETD+MNAPGSGLGEQLEGNDR
Sbjct: 241 XXXXXXXXXXXXXXXXXXRGSEESSGFGGYTGGDQFSSKETDSMNAPGSGLGEQLEGNDR 300

[Close]
BLAST of Carg09203 vs. NCBI nr
Match: XP_023530847.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530848.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530849.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 253/313 (80.83%), Postives = 254/313 (81.15%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVGNILRQGANKRIGSDLQA SLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 120
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGVGG-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DRSRGVGG           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 DRSRGVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYNASNXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXRGSEESSGFGGYTGGDQFSSKETDTMNAPGSGLGEQLEGNDRD 263
           XXXXXXXXXXXXXXXX RGSEESSGFGG+TGGDQFSSKETDTMNAPGSGLGEQLEGNDRD
Sbjct: 241 XXXXXXXXXXXXXXXXNRGSEESSGFGGFTGGDQFSSKETDTMNAPGSGLGEQLEGNDRD 300

[Close]
BLAST of Carg09203 vs. NCBI nr
Match: XP_022134612.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 9.7e-33
Identity = 82/128 (64.06%), Postives = 86/128 (67.19%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVGNILRQGANKR+GSD QA SLSICQAVRWMSSMQSSKLF+GGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 90
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

[Close]
BLAST of Carg09203 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSK GNIL+Q  NK++ + +   S S+ QA+R MS   SSKLF+GG+++S D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 87
           EAFTKYGE                                       DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

[Close]
BLAST of Carg09203 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-14
Identity = 51/127 (40.16%), Postives = 63/127 (49.61%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVG +  Q ++    S       S+ Q++R MS   SSK+FVGGIS+STD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGE--------------------------------------DLHGRRVRVNYAND 90
           EAF+KYGE                                      DLHGRR+RVNYA +
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATE 118

[Close]
BLAST of Carg09203 vs. TAIR10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 1  MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
          MAF +K+  ILRQG    +      P  S+  ++R+M    SSKLFVGG+S+ TDD SL+
Sbjct: 1  MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61 EAFTKYGEDLHGRRVRVNYANDRSRGVG 89
          +AFT +GE +    V  +    RSRG G
Sbjct: 61 QAFTSFGE-VTEATVIADRETGRSRGFG 79

[Close]
BLAST of Carg09203 vs. TAIR10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 1  MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
          MAF +K+G +LRQ     I S+   P  S+  ++R M    S+KLF+GG+S+ TDD SLR
Sbjct: 1  MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61 EAFTKYGEDLHGRRVRVNYANDRSRGVG 89
          +AF  +G D+   +V V+    RSRG G
Sbjct: 61 DAFAHFG-DVVDAKVIVDRETGRSRGFG 79

[Close]
BLAST of Carg09203 vs. TAIR10
Match: AT5G47320.1 (ribosomal protein S19)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 1  MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
          MAF +K+G   +QG N         P  S+  ++R+M    S+KL++GG+S  TD+ SL+
Sbjct: 1  MAFCTKLGGHWKQGVN--------VPVSSMLGSLRYM----STKLYIGGLSPGTDEHSLK 60

Query: 61 EAFTKYGEDLHGRRVRVNYANDRSRGVG 89
          +AF+ +   +   RV  N    RSRG G
Sbjct: 61 DAFSSF-NGVTEARVMTNKVTGRSRGYG 75

[Close]
BLAST of Carg09203 vs. Swiss-Prot
Match: sp|Q9FNR1|RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-16
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSK GNIL+Q  NK++ + +   S S+ QA+R MS   SSKLF+GG+++S D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 87
           EAFTKYGE                                       DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

[Close]
BLAST of Carg09203 vs. Swiss-Prot
Match: sp|Q9C909|RBG5_ARATH (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 51/127 (40.16%), Postives = 63/127 (49.61%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVG +  Q ++    S       S+ Q++R MS   SSK+FVGGIS+STD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGE--------------------------------------DLHGRRVRVNYAND 90
           EAF+KYGE                                      DLHGRR+RVNYA +
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATE 118

[Close]
BLAST of Carg09203 vs. Swiss-Prot
Match: sp|Q9LIS2|RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 1  MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
          MAF +K+  ILRQG    +      P  S+  ++R+M    SSKLFVGG+S+ TDD SL+
Sbjct: 1  MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61 EAFTKYGEDLHGRRVRVNYANDRSRGVG 89
          +AFT +GE +    V  +    RSRG G
Sbjct: 61 QAFTSFGE-VTEATVIADRETGRSRGFG 79

[Close]
BLAST of Carg09203 vs. Swiss-Prot
Match: sp|Q9SVM8|RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-08
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 1  MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
          MAF +K+G +LRQ     I S+   P  S+  ++R M    S+KLF+GG+S+ TDD SLR
Sbjct: 1  MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61 EAFTKYGEDLHGRRVRVNYANDRSRGVG 89
          +AF  +G D+   +V V+    RSRG G
Sbjct: 61 DAFAHFG-DVVDAKVIVDRETGRSRGFG 79

[Close]
BLAST of Carg09203 vs. Swiss-Prot
Match: sp|P39697|RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 4.5e-05
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 1  MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
          MAF +K+G   +QG N         P  S+  ++R+M    S+KL++GG+S  TD+ SL+
Sbjct: 1  MAFCTKLGGHWKQGVN--------VPVSSMLGSLRYM----STKLYIGGLSPGTDEHSLK 60

Query: 61 EAFTKYGEDLHGRRVRVNYANDRSRGVG 89
          +AF+ +   +   RV  N    RSRG G
Sbjct: 61 DAFSSF-NGVTEARVMTNKVTGRSRGYG 75

[Close]
BLAST of Carg09203 vs. TrEMBL
Match: tr|A0A0A0LPA9|A0A0A0LPA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013770 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.3e-29
Identity = 78/128 (60.94%), Postives = 82/128 (64.06%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSK GNILRQGANKRIG DL   SLS+ QAVRWMSSM+SSK+FVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 90
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

[Close]
BLAST of Carg09203 vs. TrEMBL
Match: tr|A0A1S3BVW4|A0A1S3BVW4_CUCME (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103494047 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 78/129 (60.47%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSK GNILRQGANKR+G DL   SLS+CQAVRWMSSM+SSK+FVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRVGLDLHRSSLSLCQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 90
           EAFTKYGE                                       DLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

[Close]
BLAST of Carg09203 vs. TrEMBL
Match: tr|A0A2N9HFN1|A0A2N9HFN1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38372 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 63/124 (50.81%), Postives = 73/124 (58.87%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSKVGN+LRQ  +K+I S+  AP LSI QA+R MSSM SSKLF+GGIS+ TD+QSLR
Sbjct: 1   MAFLSKVGNLLRQTGSKQISSEFCAPKLSIYQAIRCMSSMSSSKLFIGGISYGTDEQSLR 60

Query: 61  EAFTKY---------------------------------------GEDLHGRRVRVNYAN 86
           EAF KY                                       G+DLHGRRVRVNYA 
Sbjct: 61  EAFAKYGDVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAT 120

[Close]
BLAST of Carg09203 vs. TrEMBL
Match: tr|M5WAA2|M5WAA2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G205300 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.2e-20
Identity = 68/131 (51.91%), Postives = 75/131 (57.25%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAFLSK+GNILRQ ANK+I S+L    LSI QAVR MSSM SSKLF+GGIS+ TD+QSLR
Sbjct: 1   MAFLSKIGNILRQTANKQIRSELSPFKLSIHQAVRCMSSMASSKLFIGGISYQTDEQSLR 60

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 90
           EAF KYGE                                       +LHGRRVRVNYA 
Sbjct: 61  EAFAKYGEVIDARIISDRETGRSRGFGFITFTSSEEASSAIQALDGQELHGRRVRVNYAT 120

[Close]
BLAST of Carg09203 vs. TrEMBL
Match: tr|A0A1S2YRA5|A0A1S2YRA5_CICAR (glycine-rich RNA-binding protein 3, mitochondrial OS=Cicer arietinum OX=3827 GN=LOC101514071 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18
Identity = 59/127 (46.46%), Postives = 77/127 (60.63%), Query Frame = 0 

Query: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60
           MAF  K+GNILRQGAN++I S+L+ PS S+ QA+R M+S  ++KLF+GG+S+STD+QSLR
Sbjct: 39  MAFFGKLGNILRQGANRKIISELR-PSPSVFQAIRCMNSGPTTKLFIGGVSYSTDEQSLR 98

Query: 61  EAFTKYGE---------------------------------------DLHGRRVRVNYAN 89
           EAF++YGE                                       DLHGRRVRVNYA+
Sbjct: 99  EAFSRYGEVIDARIIMDRETGRSRGFAFITFNSVEEASSAIQALDGQDLHGRRVRVNYAS 158

The following BLAST results are available for this feature:
BLAST of Carg09203 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022971790.11.1e-4984.39glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita max... [more]
XP_022933621.11.6e-4884.09glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata] >XP_... [more]
XP_022971767.12.8e-4882.75glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita max... [more]
XP_023530847.12.4e-4780.83glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
XP_022134612.19.7e-3364.06glycine-rich RNA-binding protein 3, mitochondrial-like [Momordica charantia][more]
BLAST of Carg09203 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61030.11.1e-1743.20glycine-rich RNA-binding protein 3[more]
AT1G74230.17.2e-1440.16glycine-rich RNA-binding protein 5[more]
AT3G23830.11.4e-0943.18glycine-rich RNA-binding protein 4[more]
AT4G13850.13.1e-0943.18glycine-rich RNA-binding protein 2[more]
AT5G47320.12.5e-0636.36ribosomal protein S19[more]
BLAST of Carg09203 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FNR1|RBG3_ARATH1.9e-1643.20Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
sp|Q9C909|RBG5_ARATH1.3e-1240.16Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
sp|Q9LIS2|RBG4_ARATH2.5e-0843.18Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
sp|Q9SVM8|RBG2_ARATH5.6e-0843.18Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
sp|P39697|RT19_ARATH4.5e-0536.3640S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
BLAST of Carg09203 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPA9|A0A0A0LPA9_CUCSA7.3e-2960.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013770 PE=4 SV=1[more]
tr|A0A1S3BVW4|A0A1S3BVW4_CUCME1.6e-2860.47glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucumis melo OX=3656 G... [more]
tr|A0A2N9HFN1|A0A2N9HFN1_FAGSY1.6e-2050.81Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38372 PE=4 SV=1[more]
tr|M5WAA2|M5WAA2_PRUPE6.2e-2051.91Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G205300 PE=4 SV=1[more]
tr|A0A1S2YRA5|A0A1S2YRA5_CICAR2.6e-1846.46glycine-rich RNA-binding protein 3, mitochondrial OS=Cicer arietinum OX=3827 GN=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09203-RACarg09203-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 32..88
e-value: 6.3E-7
score: 31.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..262
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 30..88

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09203Cla019054Watermelon (97103) v1carwmB0594
Carg09203Cla018562Watermelon (97103) v1carwmB0592
Carg09203Csa1G013770Cucumber (Chinese Long) v2carcuB0622
Carg09203MELO3C017226Melon (DHL92) v3.5.1carmeB0599
Carg09203ClCG06G015620Watermelon (Charleston Gray)carwcgB0581
Carg09203ClCG04G011800Watermelon (Charleston Gray)carwcgB0579
Carg09203CSPI01G02900Wild cucumber (PI 183967)carcpiB0628
Carg09203CmaCh10G002950Cucurbita maxima (Rimu)carcmaB0827
Carg09203CmaCh18G000060Cucurbita maxima (Rimu)carcmaB0834
Carg09203CmaCh11G002060Cucurbita maxima (Rimu)carcmaB0830
Carg09203CmoCh11G002110Cucurbita moschata (Rifu)carcmoB0808
Carg09203CmoCh10G003180Cucurbita moschata (Rifu)carcmoB0805
Carg09203CmoCh18G000060Cucurbita moschata (Rifu)carcmoB0812
Carg09203Lsi02G001180Bottle gourd (USVL1VR-Ls)carlsiB538
Carg09203Lsi06G014120Bottle gourd (USVL1VR-Ls)carlsiB540
Carg09203Cp4.1LG04g14580Cucurbita pepo (Zucchini)carcpeB0847
Carg09203Cp4.1LG18g07080Cucurbita pepo (Zucchini)carcpeB0845
Carg09203CsGy1G002910Cucumber (Gy14) v2carcgybB0594
Carg09203MELO3C017226.2Melon (DHL92) v3.6.1carmedB0606
Carg09203CsaV3_1G002940Cucumber (Chinese Long) v3carcucB0629
Carg09203Cla97C04G078660Watermelon (97103) v2carwmbB0621
Carg09203Cla97C06G125160Watermelon (97103) v2carwmbB0623
Carg09203Bhi08G000916Wax gourdcarwgoB0704
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09203Carg04760Silver-seed gourdcarcarB416
Carg09203Carg22781Silver-seed gourdcarcarB496
Carg09203Carg15148Silver-seed gourdcarcarB536
The following block(s) are covering this gene:
GeneOrganismBlock
Carg09203Silver-seed gourdcarcarB114
Carg09203Cucumber (Gy14) v2carcgybB0595
Carg09203Cucumber (Gy14) v1carcgyB0669
Carg09203Cucumber (Gy14) v1carcgyB0673
Carg09203Cucumber (Gy14) v1carcgyB0676
Carg09203Cucurbita maxima (Rimu)carcmaB0832
Carg09203Cucurbita maxima (Rimu)carcmaB0833
Carg09203Cucurbita moschata (Rifu)carcmoB0810
Carg09203Cucurbita moschata (Rifu)carcmoB0811
Carg09203Cucurbita pepo (Zucchini)carcpeB0840
Carg09203Cucurbita pepo (Zucchini)carcpeB0841
Carg09203Cucurbita pepo (Zucchini)carcpeB0846
Carg09203Wild cucumber (PI 183967)carcpiB0629
Carg09203Wild cucumber (PI 183967)carcpiB0632
Carg09203Cucumber (Chinese Long) v2carcuB0623
Carg09203Cucumber (Chinese Long) v2carcuB0626
Carg09203Cucumber (Chinese Long) v3carcucB0630
Carg09203Bottle gourd (USVL1VR-Ls)carlsiB539
Carg09203Melon (DHL92) v3.5.1carmeB0597
Carg09203Melon (DHL92) v3.5.1carmeB0598
Carg09203Melon (DHL92) v3.6.1carmedB0604
Carg09203Melon (DHL92) v3.6.1carmedB0605
Carg09203Watermelon (Charleston Gray)carwcgB0580
Carg09203Watermelon (97103) v1carwmB0591
Carg09203Wax gourdcarwgoB0707