Carg22781 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22781
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine-rich RNA-binding protein, putative
Location	Cucurbita_argyrosperma_scaffold_224 : 231311 .. 233236 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAGGAACACTAAATTAGCATTACCATTATTGTCCAATCAAAGCACGATAAGTCAATTCCTATCCAGTATCTCCTCATCGAATCGAACGGTCTCCATTCACCCTTTCAAAATCCAACGGTGTACATGTAAGCTTTGCCTTCTACTTGTATCCATCTTCCATTGCCGCATTTACAAAACCCCGCTCCAATCCGAGGCTTAGGGTTTAAGCTCTACTGTCAAAGAAAGGAAGAGAGCGAACAAAGGTCTTATTCTCCACTCCGATTCCTCGTCCCTTTCATTTTATCTCCTGTGTTGATGTTGATTCATTCGGGTTTCAATTTTGATTGATTTTGTTTTGTGTTTAGATCTTTCGTCTTTCTGTAAAGATATTTTACGTGTCCGTTCGATGAAATACCAAAACTATTCTCCTCACCGAGCTTTGATATGATCTGATTGGAAATTTCTCTTTCATCTTTCGTTGTGTATGTGTCTTCTTGATTTCGAAAGCTTAGACCTCTACTCTTAGCGTTCTGGGTTTATGTGCTATGCTTAAGAATGATTCTGTTTGTTGTCGAGTGTTTTTAGTTTGAATTACGTATGCCTTTTTGAAGCGTCTACGAGAACATAAGCAGTTTTTTAAGTACTGAAGATTTCCTATGGGTACTAGAAAATTTTGTTTTTTGCTTCGAGATAACTTTGATCCTTATGTTCCCATAGGTTTTGTTTGTTTGTATGTATGTTTATTTTGGATCTTACAATAGTACCTACAACTTTCTTTTTGATTATGGAGTTAATGTACCTTGAAAGTTTAAAACATATTTGCAGGTACGGTGTTATCTTGCACAACTATTTTTTGTTCTCTATGGTTTTTAATTGTTTTGGGTAATTTTCTTTCAGGTCGTCAGCATGGCGTTTCTTAGTAAAGTTGGGAAAATATTTAGTCAGAGTTCTGCATCAAGGATTGGTTCAATTTCGCAACCTTCCCAGCTGTCTATCTTTCAAGCTATTAGATTCATGTCAAGTTCAAAAGTTTTTGTAGGAGGTTATCTGAAATTCCAGCTGTTCTTTTCTTCTTACGCCTTGGTGGTCTGTTAGAGCTTTCTCTGAGATCCCTTTCATTTGTACTGCAGGCCTTTCTTATGGTACTGATGATCATAGTCTGAGGGAAGCCTTCACCAAGTATGGGGAAGTAGTTGAAGGTGTGATGACTTTTCTAACTAAGCATTATTGAGTAAAAAGCTAATTTTTTTTTTTTTCACAAAATTGAATTACATCAAAAGAAAAAAAAAAATTAACAGTATCAATTTTCGTGGGAGCGCTTCCACATTTTAGCTGATGTAGACTGTTGGGTGAGCGAATTTGATATTTGTTAATGTCTATCTTTGTTTTAGCGAGAGTCATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGTTTTGTCACTTTCGTTGGCAACGAAGAAGCCTCCAGTGCTATTCAAGCACTGGATGGACAGGTAAACATTTGTGTTGAGAATGTAATTTGATGTGGTGTCTCTTGGCATCAGTATGGCTTTGATATGGGTTTGTTAGTGACTAATTCATTTGTGGGTACTGTTCTCTGTCATTGTTAATTTTCTGTAACCAGGATCTCCATGGCCGTCGCATTAGGGTAAACTTTGCAACTGAAAGGTCTCGTGGTAGCTTTGTTGGTGGTGGTGGATACAGCGGCGGTGGTGGTGGATACAGCGGCGGTGGTGGTATTGGAAGTGCAGATTATAATCGCAGTAGTGCATCCCAGGGAGGGGACAACTATTTTTCTGCCGATTCTGGTTCAGACTTCACCAGTAACCATCAGAGTGGCGGTGGACTGGATTCTGGAGATAATACTCGGGATGATTTTTTGGGCGGAGGGAAGTCTGGGGATGAGGATAACAACGACGACTATGCCAAAAGGGCTTGA

mRNA sequence

AATGAGGAACACTAAATTAGCATTACCATTATTGTCCAATCAAAGCACGATAAGTCAATTCCTATCCAGTATCTCCTCATCGAATCGAACGGTCTCCATTCACCCTTTCAAAATCCAACGGTGTACATGTAAGCTTTGCCTTCTACTTGTATCCATCTTCCATTGCCGCATTTACAAAACCCCGCTCCAATCCGAGGCTTAGGGTTTAAGCTCTACTGTCAAAGAAAGGAAGAGAGCGAACAAAGGTCGTCAGCATGGCGTTTCTTAGTAAAGTTGGGAAAATATTTAGTCAGAGTTCTGCATCAAGGATTGGTTCAATTTCGCAACCTTCCCAGCTGTCTATCTTTCAAGCTATTAGATTCATGTCAAGTTCAAAAGTTTTTGTAGGAGGCCTTTCTTATGGTACTGATGATCATAGTCTGAGGGAAGCCTTCACCAAGTATGGGGAAGTAGTTGAAGCGAGAGTCATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGTTTTGTCACTTTCGTTGGCAACGAAGAAGCCTCCAGTGCTATTCAAGCACTGGATGGACAGGATCTCCATGGCCGTCGCATTAGGGTAAACTTTGCAACTGAAAGGTCTCGTGGTAGCTTTGTTGGTGGTGGTGGATACAGCGGCGGTGGTGGTGGATACAGCGGCGGTGGTGGTATTGGAAGTGCAGATTATAATCGCAGTAGTGCATCCCAGGGAGGGGACAACTATTTTTCTGCCGATTCTGGTTCAGACTTCACCAGTAACCATCAGAGTGGCGGTGGACTGGATTCTGGAGATAATACTCGGGATGATTTTTTGGGCGGAGGGAAGTCTGGGGATGAGGATAACAACGACGACTATGCCAAAAGGGCTTGA

Coding sequence (CDS)

ATGGCGTTTCTTAGTAAAGTTGGGAAAATATTTAGTCAGAGTTCTGCATCAAGGATTGGTTCAATTTCGCAACCTTCCCAGCTGTCTATCTTTCAAGCTATTAGATTCATGTCAAGTTCAAAAGTTTTTGTAGGAGGCCTTTCTTATGGTACTGATGATCATAGTCTGAGGGAAGCCTTCACCAAGTATGGGGAAGTAGTTGAAGCGAGAGTCATATTGGATCGTGATACTGGTAGATCCAGAGGTTTTGGTTTTGTCACTTTCGTTGGCAACGAAGAAGCCTCCAGTGCTATTCAAGCACTGGATGGACAGGATCTCCATGGCCGTCGCATTAGGGTAAACTTTGCAACTGAAAGGTCTCGTGGTAGCTTTGTTGGTGGTGGTGGATACAGCGGCGGTGGTGGTGGATACAGCGGCGGTGGTGGTATTGGAAGTGCAGATTATAATCGCAGTAGTGCATCCCAGGGAGGGGACAACTATTTTTCTGCCGATTCTGGTTCAGACTTCACCAGTAACCATCAGAGTGGCGGTGGACTGGATTCTGGAGATAATACTCGGGATGATTTTTTGGGCGGAGGGAAGTCTGGGGATGAGGATAACAACGACGACTATGCCAAAAGGGCTTGA

Protein sequence

MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERSRGSFVGGGGYSGGGGGYSGGGGIGSADYNRSSASQGGDNYFSADSGSDFTSNHQSGGGLDSGDNTRDDFLGGGKSGDEDNNDDYAKRA

Homology

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BLAST of Carg22781 vs. NCBI nr
Match: XP_022954706.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 121 RGSFVGGGXXXXXXXXXXXXXXXXXXDYNRSSASQGGDNYFSADSGSDFTSNHQSGGGLD 180
           RGSFVGGGXXXXXXXXXXXXXXXXXXDYNRSSASQGGDNYFSADSGSDFTSNHQSGGGLD
Sbjct: 121 RGSFVGGGXXXXXXXXXXXXXXXXXXDYNRSSASQGGDNYFSADSGSDFTSNHQSGGGLD 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXDDYAKRA 209
           XXXXXXXXXXXXXXXXXXXXXDDYAKRA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXDDYAKRA 208

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BLAST of Carg22781 vs. NCBI nr
Match: XP_022994220.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 184/209 (88.04%), Postives = 184/209 (88.04%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIR MSSSKVFVGGLSYGTDDHSLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRLMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 121 RGSFVGG-GXXXXXXXXXXXXXXXXXXDYNRSSASQGGDNYFSADSGSDFTSNHQSGGGL 180
           RGSFVGG  XXXXXXXXXXXXXXXXX DYNRSSASQGGDNYFSADSGSDFTSNHQSGGGL
Sbjct: 121 RGSFVGGXXXXXXXXXXXXXXXXXXXVDYNRSSASQGGDNYFSADSGSDFTSNHQSGGGL 180

Query: 181 DXXXXXXXXXXXXXXXXXXXXXDDYAKRA 209
           D                     DDYAKRA
Sbjct: 181 DSGDNTRDDFLGGGKYGDEDNNDDYAKRA 209

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BLAST of Carg22781 vs. NCBI nr
Match: XP_023541373.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023541374.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 6.7e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF
Sbjct: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS
Sbjct: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120

Query: 121 RGSFVG 127
           RGSFVG
Sbjct: 121 RGSFVG 126

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BLAST of Carg22781 vs. NCBI nr
Match: XP_022973197.1 (glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita maxima] >XP_022973198.1 glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 6.3e-51
Identity = 117/160 (73.12%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVGK+F +SSAS I S  QPS+LSIFQ+IR MSSSKVFVGGLSYGTDD SLREAF
Sbjct: 1   MAFLSKVGKVFRKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
            KYGEVVEARVI DRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGR IRVNFATERS
Sbjct: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120

Query: 121 RGSFVGGGXXXXXXXXXXXXXXXXXXDYNRSSASQGGDNY 161
           RG    GG                   YNRSS+ QGG  Y
Sbjct: 121 RGGGYDGG----------------SSGYNRSSSYQGGGGY 144

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BLAST of Carg22781 vs. NCBI nr
Match: XP_023001202.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 6.9e-50
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFL KVGKIFS+SSAS I S  QPS+LSIFQ+IR MSSSKVFVGGLSYGTDD SL+EAF
Sbjct: 1   MAFLGKVGKIFSKSSASLIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLKEAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
            KYGEVVEARVI DRDTGRSRGFGFVTF  NEEASSAIQALDGQDLHGR IRVNFATERS
Sbjct: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120

Query: 121 RGS--FVGGGXXXXXXXXXXXXXXXXXXDYNRSSASQGGDNY 161
           RG+  + GG                    YNRSS+ QGG  Y
Sbjct: 121 RGAGGYDGGS-----------------SGYNRSSSYQGGGGY 145

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BLAST of Carg22781 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 157.5 bits (397), Expect = 8.7e-39
Identity = 78/122 (63.93%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSK G I  Q++  ++ +    S  S+FQAIR MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           TKYGEVV+ RVILDR+TGRSRGFGFVTF  +E ASSAIQALDG+DLHGR ++VN+A +R+
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 RG 123
            G
Sbjct: 121 SG 122

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BLAST of Carg22781 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 156.0 bits (393), Expect = 2.5e-38
Identity = 81/122 (66.39%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVG++FSQ+S+    S       S+ Q+IR MSSSK+FVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTAS------SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           +KYGEVV+A++I+DR+TGRSRGF FVTF   EEAS+A+Q LDGQDLHGRRIRVN+ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 115

Query: 121 RG 123
            G
Sbjct: 121 SG 115

[Close]

BLAST of Carg22781 vs. TAIR10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-28
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAF +K+  I  Q     +   S     S+  ++R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           T +GEV EA VI DR+TGRSRGFGFV+F   + A++AI+ +DG++L+GR+IRVN ATERS
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115

[Close]

BLAST of Carg22781 vs. TAIR10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-26
Identity = 64/130 (49.23%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAF +K+G +  Q+ +S  G++   S L    ++R M S+K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQNISSN-GNVPVTSMLG---SLRLM-STKLFIGGLSWGTDDASLRDAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
             +G+VV+A+VI+DR+TGRSRGFGFV F     A++AI  +DG++L+GR IRVN A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 RG--SFVGGG 129
               ++ GGG
Sbjct: 121 SAPRAYGGGG 125

[Close]

BLAST of Carg22781 vs. TAIR10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-21
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 39  SSKVFVGGLSYGTDDHSLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAI 98
           SSK+F+GGLS+  D+ SL++AF+ +GEV E R+  D+ +GRSRGFGFV F    +A SA 
Sbjct: 40  SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99

Query: 99  QALDGQDLHGRRIRVNFATERSRG 123
            A+DG+ L GR +R++FA ER RG
Sbjct: 100 DAMDGKGLLGRPLRISFALERVRG 123

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BLAST of Carg22781 vs. Swiss-Prot
Match: sp|Q9FNR1|RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-37
Identity = 78/122 (63.93%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSK G I  Q++  ++ +    S  S+FQAIR MSSSK+F+GG++Y  D+ SLREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           TKYGEVV+ RVILDR+TGRSRGFGFVTF  +E ASSAIQALDG+DLHGR ++VN+A +R+
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 RG 123
            G
Sbjct: 121 SG 122

[Close]

BLAST of Carg22781 vs. Swiss-Prot
Match: sp|Q9C909|RBG5_ARATH (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-37
Identity = 81/122 (66.39%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVG++FSQ+S+    S       S+ Q+IR MSSSK+FVGG+SY TD+  LREAF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTAS------SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           +KYGEVV+A++I+DR+TGRSRGF FVTF   EEAS+A+Q LDGQDLHGRRIRVN+ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 115

Query: 121 RG 123
            G
Sbjct: 121 SG 115

[Close]

BLAST of Carg22781 vs. Swiss-Prot
Match: sp|Q9LIS2|RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.6e-27
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAF +K+  I  Q     +   S     S+  ++R+M SSK+FVGGLS+GTDD SL++AF
Sbjct: 1   MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYM-SSKLFVGGLSWGTDDSSLKQAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           T +GEV EA VI DR+TGRSRGFGFV+F   + A++AI+ +DG++L+GR+IRVN ATERS
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115

[Close]

BLAST of Carg22781 vs. Swiss-Prot
Match: sp|Q9SVM8|RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 64/130 (49.23%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAF +K+G +  Q+ +S  G++   S L    ++R M S+K+F+GGLS+GTDD SLR+AF
Sbjct: 1   MAFCNKLGGLLRQNISSN-GNVPVTSMLG---SLRLM-STKLFIGGLSWGTDDASLRDAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
             +G+VV+A+VI+DR+TGRSRGFGFV F     A++AI  +DG++L+GR IRVN A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 RG--SFVGGG 129
               ++ GGG
Sbjct: 121 SAPRAYGGGG 125

[Close]

BLAST of Carg22781 vs. Swiss-Prot
Match: sp|Q08937|ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 38  SSSKVFVGGLSYGTDDHSLREAFTKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSA 97
           SS++V+VG LS+G DD +L+E F++ G VV+A+V+ DRD+GRSRGFGFVT+  ++E + A
Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDA 264

Query: 98  IQALDGQDLHGRRIRVNFATERSRGSF 125
           I +L+G DL GR IRV+ A ER R  F
Sbjct: 265 IDSLNGVDLDGRSIRVSAAEERPRRQF 291

[Close]

BLAST of Carg22781 vs. TrEMBL
Match: tr|A0A0A0LQL8|A0A0A0LQL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.6e-45
Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVGKIFSQSSAS I S  QPS LS+FQ +RFMSSSKVFVGGLSYGTDD  L EAF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           TKYGEVVEARVI+DRDTGRSRGFGFVTF  +E+ASSAIQALDGQDL GRRIR ++AT+R+
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 RG 123
            G
Sbjct: 121 SG 122

[Close]

BLAST of Carg22781 vs. TrEMBL
Match: tr|A0A251JAW8|A0A251JAW8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G085900 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 90/127 (70.87%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVG +  Q++ + + +    S+ S++QAIR+MSSSK+FVGG+SY TDD SLREAF
Sbjct: 1   MAFLSKVGSVLRQTATTHVNNELSASRPSLYQAIRWMSSSKLFVGGVSYATDDTSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           +KYGEVVEAR+ILDR+TGRSRGFGFVT+  +EEASSAIQALDGQDLHGRR+RVN+AT+R+
Sbjct: 61  SKYGEVVEARIILDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYATDRA 120

Query: 121 RGSFVGG 128
           RGSF GG
Sbjct: 121 RGSFGGG 127

[Close]

BLAST of Carg22781 vs. TrEMBL
Match: tr|A0A2C9VR70|A0A2C9VR70_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G084600 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.3e-43
Identity = 89/128 (69.53%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVG +  Q+ + +I      S+ S++QAIR MSSSK+F+GG+SY TDD SLREAF
Sbjct: 1   MAFLSKVGNVLRQAGSKQINGELSASRPSLYQAIRCMSSSKLFIGGISYATDDTSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           +KYGEV+EARVILDR+TGRSRGFGFVT+  +EEASSAIQALDGQDLHGRR++VN+A +R+
Sbjct: 61  SKYGEVIEARVILDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVKVNYANDRA 120

Query: 121 RGSFVGGG 129
           RGSF GGG
Sbjct: 121 RGSFGGGG 128

[Close]

BLAST of Carg22781 vs. TrEMBL
Match: tr|B9RLN6|B9RLN6_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1469720 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.6e-42
Identity = 91/128 (71.09%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAFLSKVG +  Q++  +I +    S+ S+FQAIRFMSSSKVFVGG+SY TDD SLREAF
Sbjct: 1   MAFLSKVGNLLRQTATKQISNELSASRPSMFQAIRFMSSSKVFVGGISYQTDDTSLREAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
            KYGEV+EARVI+DR+TGRSRGF FVT+  +EEASSAIQALDGQDLHGRR+RVN+A +R 
Sbjct: 61  GKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRP 120

Query: 121 RGSFVGGG 129
           R SF GGG
Sbjct: 121 RTSFGGGG 128

[Close]

BLAST of Carg22781 vs. TrEMBL
Match: tr|A0A1Q3B8Q8|A0A1Q3B8Q8_CEPFO (RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07925 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.0e-42
Identity = 90/124 (72.58%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSASRIGSISQPSQLSIFQAIRFMSSSKVFVGGLSYGTDDHSLREAF 60
           MAF SKVG I  Q++  +IG+    S+ SIFQAIR MSSSK+F+GGLSY TD+ SL EAF
Sbjct: 1   MAFFSKVGNILKQTATKQIGADLSASRPSIFQAIRCMSSSKLFIGGLSYSTDEQSLNEAF 60

Query: 61  TKYGEVVEARVILDRDTGRSRGFGFVTFVGNEEASSAIQALDGQDLHGRRIRVNFATERS 120
           +KYGEVVEARVILDR+TGRSRGFGF+TF   EEASSAIQALDGQDLHGRR+RVN+ATERS
Sbjct: 61  SKYGEVVEARVILDRETGRSRGFGFITFTSTEEASSAIQALDGQDLHGRRVRVNYATERS 120

Query: 121 RGSF 125
           R  +
Sbjct: 121 RSPY 124

The following BLAST results are available for this feature:

BLAST of Carg22781 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954706.1	1.5e-81	100.00	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]	[more]
XP_022994220.1	1.2e-78	88.04	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_023541373.1	6.7e-61	100.00	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022973197.1	6.3e-51	73.13	glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita maxima] >XP_0229731...	[more]
XP_023001202.1	6.9e-50	72.22	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Carg22781 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61030.1	8.7e-39	63.93	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	2.5e-38	66.39	glycine-rich RNA-binding protein 5	[more]
AT3G23830.1	3.1e-28	54.17	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	6.5e-26	49.23	glycine-rich RNA-binding protein 2	[more]
AT3G08000.1	8.2e-21	53.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg22781 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FNR1\|RBG3_ARATH	1.6e-37	63.93	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q9C909\|RBG5_ARATH	4.6e-37	66.39	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q9LIS2\|RBG4_ARATH	5.6e-27	54.17	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q9SVM8\|RBG2_ARATH	1.2e-24	49.23	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q08937\|ROC2_NICSY	7.9e-21	55.17	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of Carg22781 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQL8\|A0A0A0LQL8_CUCSA	2.6e-45	81.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1	[more]
tr\|A0A251JAW8\|A0A251JAW8_MANES	2.4e-43	70.87	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G085900 PE=4 SV=...	[more]
tr\|A0A2C9VR70\|A0A2C9VR70_MANES	9.3e-43	69.53	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G084600 PE=4 SV=...	[more]
tr\|B9RLN6\|B9RLN6_RICCO	4.6e-42	71.09	Glycine-rich RNA-binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1...	[more]
tr\|A0A1Q3B8Q8\|A0A1Q3B8Q8_CEPFO	6.0e-42	72.58	RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22781-RA	Carg22781-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..114 e-value: 1.7E-28 score: 110.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..112 e-value: 1.7E-21 score: 75.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..118 score: 22.026
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 13..138 e-value: 2.4E-31 score: 110.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..208
None	No IPR available	PANTHER	PTHR44202	FAMILY NOT NAMED	coord: 35..122
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 34..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22781	Csa1G039180	Cucumber (Chinese Long) v2	carcuB0540
Carg22781	Csa1G013770	Cucumber (Chinese Long) v2	carcuB0543
Carg22781	CSPI01G02900	Wild cucumber (PI 183967)	carcpiB0550
Carg22781	CSPI01G06120	Wild cucumber (PI 183967)	carcpiB0547
Carg22781	Cucsa.198260	Cucumber (Gy14) v1	carcgyB0590
Carg22781	CmaCh18G000060	Cucurbita maxima (Rimu)	carcmaB0722
Carg22781	CmaCh11G002060	Cucurbita maxima (Rimu)	carcmaB0720
Carg22781	CmoCh18G000060	Cucurbita moschata (Rifu)	carcmoB0699
Carg22781	Cp4.1LG09g11660	Cucurbita pepo (Zucchini)	carcpeB0722
Carg22781	Cp4.1LG04g14580	Cucurbita pepo (Zucchini)	carcpeB0726
Carg22781	CsGy1G005830	Cucumber (Gy14) v2	carcgybB0517
Carg22781	CsGy1G002910	Cucumber (Gy14) v2	carcgybB0519
Carg22781	CsaV3_1G005980	Cucumber (Chinese Long) v3	carcucB0546
Carg22781	CsaV3_1G002940	Cucumber (Chinese Long) v3	carcucB0549
Carg22781	Bhi08G000916	Wax gourd	carwgoB0625

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22781	Carg09203	Silver-seed gourd	carcarB496

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22781	Cucumber (Gy14) v2	carcgybB0518
Carg22781	Cucumber (Gy14) v1	carcgyB0588
Carg22781	Cucurbita maxima (Rimu)	carcmaB0721
Carg22781	Cucurbita moschata (Rifu)	carcmoB0698
Carg22781	Cucurbita pepo (Zucchini)	carcpeB0725
Carg22781	Wild cucumber (PI 183967)	carcpiB0549
Carg22781	Cucumber (Chinese Long) v2	carcuB0542
Carg22781	Cucumber (Chinese Long) v3	carcucB0548
Carg22781	Bottle gourd (USVL1VR-Ls)	carlsiB467
Carg22781	Melon (DHL92) v3.5.1	carmeB0516
Carg22781	Melon (DHL92) v3.6.1	carmedB0522
Carg22781	Watermelon (Charleston Gray)	carwcgB0498
Carg22781	Watermelon (97103) v1	carwmB0509
Carg22781	Watermelon (97103) v2	carwmbB0536
Carg22781	Silver-seed gourd	carcarB413