Carg15148 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15148
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine-rich RNA-binding protein, putative
Location	Cucurbita_argyrosperma_scaffold_073 : 15089 .. 18227 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCCAGCTGTTCGCAAGTCATCCTAGGGTTTTAGCATCGCAACGAGAGAGAAGAAGAACAAGGTTCGTTCTCTAATTACCCGATCTTCTCTGTCTGTGATTTTCCATTACATGTTCTTTTGCCTTCTGTATGTGCTTTGATGTTTGAATTACTTACGAAATCGTTGGAAATGTTCGTATCAAGTGTGTTGGACTTTTGATTGATGATCTCTTACTATCCTCCGAGTTATTTTTCCGGTGTATTAGATTTAGGAACTGGAAGAAATGATAGCCGCAAATAGGCGATGAGTCTTGTCTCTTTCTCGTGTTACGTATTCGAGCTTTTCATCACGGCCTCTTTTTCGTTCGCGTCTTGTTTTGGTTACTGGCTTTGATTTTATATCTCAACATGTTATGGTATACGAACGAGTGTTGGTGGTAAGGATCATATTGTTGAGTTTGAAATGTTCTTATCAACCACCAAAATCGAGCTTATGCTCGTTGGCGCTTAAAGGGATACTTATGAACGTTATTACGTACACAAGTGCCGCATTTCACTCCTTGCGAGTGTTCTATTTTTTTACCCTCTCCTGTTCAGTTGTTTTGTAGTATGTTCTGGTGATGAGTTTGTGAAGTGTGTTGCGACAGTGGTCTGTGTACTCTAATTTGTCGAAAATCAAAGTGGAACATAATTTTAGGCTAACGGAAAAGCTTTCATTGCTGCCTCTGATGTTGAATCTTCGCCACTAATCTCTTTCAGGGTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTGCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTATCGGAGGTTCTATGTGATTTTTTTTTTTTTTTTTTTTTTCTTTTAAGAACATGTAGACGCCAATTTCTTTTTCTTTATCTCGTATTCATATGCATGTTTATGATGACAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTTATTGAAGGTATATCGCCATTCAACTGACTCATTTACAAGTTAAGTGTTGAAAACTATCTTAGAAGTATGTTCCCAATTACTATCATACCTTTACGCAACAAAAATGATATATTTAATAAACGCACTTTTGGAACCCGCATGGTCGAATCTGCCTGAGGAATTCTGTCCCTTTCAAATATTTTCTGAAATTATGGCCGAGCAGGTGGCCTTGGGGAGGGGTGGAGCTAGTGGATAGTGTCAAATCTGAAGTTTAGTAAAAATGTTGGTTTCCTTGTTTACCCTTCTTTTCTTTGCCCCCGTGACAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGTAATGATTCTGCTGTCAGCTTATTGTGATTAAAAAGGATAAAACATCATGTTATACTCATATGCCAAAGTATACTATTGAGTTAATGCATCTCCGCATATAAAATGCTTCATGTCATTTGTCTGCTTTATTTCCTGTTTGACGATCGTGTCATTGTGTCAGTTGCATGAACATTGTATCTTATGAATGCATTATGAGAGCTTGAAATTGCGGAGATATTAAAGCTAATATCTGAGGCCATTCTCTATAATATTCTCAACAATTAAATTGTGTACTAATGTGAAGTGTTCTAGGAGCTGTCACGTTGATTGGTTATTTATTCTCAAAGTACATATATATGTATATGTATATTTCTGAATGTTGTGTGATTAAGGCGAGTTGTATATTGGAAACTTGTCCCAATTTCTGTTATAATGCTGGCAGTCACTCCTCGTTCATGTTTTGGCACAGCTGTTCCTCTTTTATATTATCAAGGAAGCTGGCATCTTATGGTACAAAGTTAATTAAAAAATTTTAGACAAAAAAATAAAAAAAGAGGAAAAAATAACGTTTCAAAGAAAGATGAGTGATTATGTTGATTGTAATTTGGAGGCTTGTTCCATCTCCAAATCTATGAGAATGAATCAAATTTGAAATTAACTGGCTAATTAATGGCTTAGTTTATTATTGTTCACTTTTTCCCTTTCAAACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGCGGTGGCGGTGGTGGCTATGGTGGTGGCGGGTATGGTGGCGGTGGTGGTGGCTATGGTGGCGGTGGCTATGGCGGCAGCGGTAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGGGCTTATGGCGGTGGTGTCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGGATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGATTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAACTTGGCAGCAACGAAGCTAACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGCAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCCTAATAAATCATATGCATTATCCATAGTAGCTTCATCGTATTTTTGGTTATTGCCATGTAGATTTTCGCTACATTCTCCAGTGTTGAACACATCTACTTTGTTTGTATGTTGGACTTGCCTCAATGATCTCTGAATTTCTCTATGCACTTTCAATTTAGTTTCTCAATGATAAATAAGTTTTGTCCGAGTACGATTAGGTACCATCTTCCTCTACCTTCTCTCTCTTTTGAAGAAAGAGCCTTTTTTTATAAGGGATGTTCTTTGGAGGGGGCGGCACCATCTTACTCCGCATCTTTATAAAGAATGTGTTGTTCTCCTTCTGAACTGCGTCACTATTATTGTTGGTG

mRNA sequence

AAAAACCCCAGCTGTTCGCAAGTCATCCTAGGGTTTTAGCATCGCAACGAGAGAGAAGAAGAACAAGGGTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTGCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTTATTGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGCGGTGGCGGTGGTGGCTATGGTGGTGGCGGGTATGGTGGCGGTGGTGGTGGCTATGGTGGCGGTGGCTATGGCGGCAGCGGTAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGGGCTTATGGCGGTGGTGTCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGGATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGATTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAACTTGGCAGCAACGAAGCTAACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGCAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCCTAATAAATCATATGCATTATCCATAGTAGCTTCATCGTATTTTTGGTTATTGCCATGTAGATTTTCGCTACATTCTCCAGTGTTGAACACATCTACTTTGTTTGTATGTTGGACTTGCCTCAATGATCTCTGAATTTCTCTATGCACTTTCAATTTAGTTTCTCAATGATAAATAAGTTTTGTCCGAGTACGATTAGGTACCATCTTCCTCTACCTTCTCTCTCTTTTGAAGAAAGAGCCTTTTTTTATAAGGGATGTTCTTTGGAGGGGGCGGCACCATCTTACTCCGCATCTTTATAAAGAATGTGTTGTTCTCCTTCTGAACTGCGTCACTATTATTGTTGGTG

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTGCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTATCGGAGGTATTTCATACAGCACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATATGGGGAAGTTATTGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGCGGTGGCGGTGGTGGCTATGGTGGTGGCGGGTATGGTGGCGGTGGTGGTGGCTATGGTGGCGGTGGCTATGGCGGCAGCGGTAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGGGCTTATGGCGGTGGTGTCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGGATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGATTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAACTTGGCAGCAACGAAGCTAACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGCAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCCTAA

Protein sequence

MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGSGSYGGGGGSYGGGAYGGGVSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGSGTSADFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQLGSNEANTLNASGDQGLGEQLEGNDRDEDDNADDFAKRA

Homology

[Close]

BLAST of Carg15148 vs. NCBI nr
Match: XP_023516049.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVF+GGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG 128
           DRSRGMG
Sbjct: 121 DRSRGMG 127

[Close]

BLAST of Carg15148 vs. NCBI nr
Match: XP_022921902.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 243.8 bits (621), Expect = 7.7e-61
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLN QAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGM 127
           DRSRGM
Sbjct: 121 DRSRGM 126

[Close]

BLAST of Carg15148 vs. NCBI nr
Match: XP_022987970.1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLNLQAPSLSI QAVRWMSSMQSSKVF+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG 128
           DRSRGMG
Sbjct: 121 DRSRGMG 127

[Close]

BLAST of Carg15148 vs. NCBI nr
Match: XP_022987968.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022987969.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLNLQAPSLSI QAVRWMSSMQSSKVF+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG 128
           DRSRGMG
Sbjct: 121 DRSRGMG 127

[Close]

BLAST of Carg15148 vs. NCBI nr
Match: XP_022933621.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata] >XP_022933622.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 117/127 (92.13%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGNILRQGANKR G +LQAPSLSI QAVRWMSSMQSSK+F+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG 128
           DRSRG+G
Sbjct: 121 DRSRGVG 127

[Close]

BLAST of Carg15148 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 171.4 bits (433), Expect = 8.9e-43
Identity = 88/125 (70.40%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK GNIL+Q  NK+    +   S S+FQA+R MS   SSK+FIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRSRG 126
           DR+ G
Sbjct: 121 DRTSG 122

[Close]

BLAST of Carg15148 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 80/127 (62.99%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVG +  Q ++  T       S S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTA------SSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 117

Query: 121 DRSRGMG 128
           +R  G G
Sbjct: 121 ERGSGFG 117

[Close]

BLAST of Carg15148 vs. TAIR10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 125.2 bits (313), Expect = 7.3e-29
Identity = 62/123 (50.41%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+  ILRQG ++ +      P  S+  ++R+M    SSK+F+GG+S+ TDD SL+
Sbjct: 1   MAFCNKLSGILRQGVSQSS----NGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AFT +GEV EA VI DRETGRSRGFGFV+++  + A++AI+ +DG++L+GR++RVN A 
Sbjct: 61  QAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLAT 115

Query: 121 DRS 124
           +RS
Sbjct: 121 ERS 115

[Close]

BLAST of Carg15148 vs. TAIR10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-27
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+G +LRQ  +     N   P  S+  ++R M    S+K+FIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISS----NGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 114

Query: 121 DR 123
           DR
Sbjct: 121 DR 114

[Close]

BLAST of Carg15148 vs. TAIR10
Match: AT5G47320.1 (ribosomal protein S19)

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-21
Identity = 52/121 (42.98%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+G   +QG N         P  S+  ++R+M    S+K++IGG+S  TD+ SL+
Sbjct: 1   MAFCTKLGGHWKQGVN--------VPVSSMLGSLRYM----STKLYIGGLSPGTDEHSLK 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF+ +  V EARV+ ++ TGRSRG+GFV + S + A+SAI A++GQ+L+G  + VN A 
Sbjct: 61  DAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 109

Query: 121 D 122
           D
Sbjct: 121 D 109

[Close]

BLAST of Carg15148 vs. Swiss-Prot
Match: sp|Q9FNR1|RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-41
Identity = 88/125 (70.40%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK GNIL+Q  NK+    +   S S+FQA+R MS   SSK+FIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRSRG 126
           DR+ G
Sbjct: 121 DRTSG 122

[Close]

BLAST of Carg15148 vs. Swiss-Prot
Match: sp|Q9C909|RBG5_ARATH (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-35
Identity = 80/127 (62.99%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVG +  Q ++  T       S S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTA------SSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 117

Query: 121 DRSRGMG 128
           +R  G G
Sbjct: 121 ERGSGFG 117

[Close]

BLAST of Carg15148 vs. Swiss-Prot
Match: sp|Q9LIS2|RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-27
Identity = 62/123 (50.41%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+  ILRQG ++ +      P  S+  ++R+M    SSK+F+GG+S+ TDD SL+
Sbjct: 1   MAFCNKLSGILRQGVSQSS----NGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AFT +GEV EA VI DRETGRSRGFGFV+++  + A++AI+ +DG++L+GR++RVN A 
Sbjct: 61  QAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLAT 115

Query: 121 DRS 124
           +RS
Sbjct: 121 ERS 115

[Close]

BLAST of Carg15148 vs. Swiss-Prot
Match: sp|Q9SVM8|RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.2e-26
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAF +K+G +LRQ  +     N   P  S+  ++R M    S+K+FIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISS----NGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 114

Query: 121 DR 123
           DR
Sbjct: 121 DR 114

[Close]

BLAST of Carg15148 vs. Swiss-Prot
Match: sp|Q43472|GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-20
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 44  KVFIGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + F+GG+ ++TDDQSL+ AF+KYG+VI++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 104 LDGQDLHGRRVRVNYA 120
           ++GQDL GR + VN A
Sbjct: 67  MNGQDLDGRNITVNEA 82

[Close]

BLAST of Carg15148 vs. TrEMBL
Match: tr|A0A0A0LPA9|A0A0A0LPA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013770 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.2e-55
Identity = 114/127 (89.76%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK GNILRQGANKR GL+L   SLS+ QAVRWMSSM+SSKVF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRSRGMG 128
           DR+RG G
Sbjct: 121 DRARGGG 127

[Close]

BLAST of Carg15148 vs. TrEMBL
Match: tr|A0A1S3BVW4|A0A1S3BVW4_CUCME (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103494047 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-53
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK GNILRQGANKR GL+L   SLS+ QAVRWMSSM+SSKVF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRVGLDLHRSSLSLCQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 D-RSRGMG 128
           D R RG G
Sbjct: 121 DNRPRGFG 128

[Close]

BLAST of Carg15148 vs. TrEMBL
Match: tr|A0A2N9HFN1|A0A2N9HFN1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38372 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 99/124 (79.84%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGN+LRQ  +K+      AP LSI+QA+R MSSM SSK+FIGGISY TD+QSLR
Sbjct: 1   MAFLSKVGNLLRQTGSKQISSEFCAPKLSIYQAIRCMSSMSSSKLFIGGISYGTDEQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF KYG+V+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYA 
Sbjct: 61  EAFAKYGDVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAT 120

Query: 121 DRSR 125
           DR+R
Sbjct: 121 DRAR 124

[Close]

BLAST of Carg15148 vs. TrEMBL
Match: tr|M5WAA2|M5WAA2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G205300 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 98/124 (79.03%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSK+GNILRQ ANK+    L    LSI QAVR MSSM SSK+FIGGISY TD+QSLR
Sbjct: 1   MAFLSKIGNILRQTANKQIRSELSPFKLSIHQAVRCMSSMASSKLFIGGISYQTDEQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF KYGEVI+AR+I DRETGRSRGFGF+T+TSSEEASSAIQALDGQ+LHGRRVRVNYA 
Sbjct: 61  EAFAKYGEVIDARIISDRETGRSRGFGFITFTSSEEASSAIQALDGQELHGRRVRVNYAT 120

Query: 121 DRSR 125
           DR R
Sbjct: 121 DRPR 124

[Close]

BLAST of Carg15148 vs. TrEMBL
Match: tr|A0A2C9VR70|A0A2C9VR70_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G084600 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.0e-44
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60
           MAFLSKVGN+LRQ  +K+    L A   S++QA+R MS   SSK+FIGGISY+TDD SLR
Sbjct: 1   MAFLSKVGNVLRQAGSKQINGELSASRPSLYQAIRCMS---SSKLFIGGISYATDDTSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEVIEARVI+DRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRV+VNYAN
Sbjct: 61  EAFSKYGEVIEARVILDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVKVNYAN 120

Query: 121 DRSRG 126
           DR+RG
Sbjct: 121 DRARG 122

The following BLAST results are available for this feature:

BLAST of Carg15148 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516049.1	1.6e-61	98.43	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022921902.1	7.7e-61	99.21	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata]	[more]
XP_022987970.1	2.9e-60	97.64	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita max...	[more]
XP_022987968.1	2.9e-60	97.64	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita max...	[more]
XP_022933621.1	1.8e-57	92.13	glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata] >XP_...	[more]

BLAST of Carg15148 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61030.1	8.9e-43	70.40	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	1.2e-36	62.99	glycine-rich RNA-binding protein 5	[more]
AT3G23830.1	7.3e-29	50.41	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	1.8e-27	50.82	glycine-rich RNA-binding protein 2	[more]
AT5G47320.1	7.3e-21	42.98	ribosomal protein S19	[more]

BLAST of Carg15148 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FNR1\|RBG3_ARATH	1.6e-41	70.40	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q9C909\|RBG5_ARATH	2.2e-35	62.99	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q9LIS2\|RBG4_ARATH	1.3e-27	50.41	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q9SVM8\|RBG2_ARATH	3.2e-26	50.82	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|Q43472\|GRP_HORVU	1.2e-20	59.21	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of Carg15148 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPA9\|A0A0A0LPA9_CUCSA	7.2e-55	89.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013770 PE=4 SV=1	[more]
tr\|A0A1S3BVW4\|A0A1S3BVW4_CUCME	1.4e-53	88.28	glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2N9HFN1\|A0A2N9HFN1_FAGSY	5.5e-47	79.84	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38372 PE=4 SV=1	[more]
tr\|M5WAA2\|M5WAA2_PRUPE	1.5e-44	79.03	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G205300 PE=4 SV=1	[more]
tr\|A0A2C9VR70\|A0A2C9VR70_MANES	2.0e-44	78.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G084600 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15148-RA	Carg15148-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 161..171 score: 43.18 coord: 133..148 score: 60.16 coord: 213..231 score: 34.21 coord: 39..55 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..315
None	No IPR available	PANTHER	PTHR44202	FAMILY NOT NAMED	coord: 38..124
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..117 e-value: 6.3E-30 score: 115.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..115 e-value: 1.1E-22 score: 79.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..121 score: 22.299
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 24..139 e-value: 1.0E-32 score: 114.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 40..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15148	Cla019054	Watermelon (97103) v1	carwmB0788
Carg15148	Csa1G013770	Cucumber (Chinese Long) v2	carcuB0804
Carg15148	MELO3C017226	Melon (DHL92) v3.5.1	carmeB0784
Carg15148	ClCG06G015620	Watermelon (Charleston Gray)	carwcgB0763
Carg15148	CSPI01G02900	Wild cucumber (PI 183967)	carcpiB0823
Carg15148	Cucsa.198260	Cucumber (Gy14) v1	carcgyB0899
Carg15148	CmaCh11G002060	Cucurbita maxima (Rimu)	carcmaB1093
Carg15148	CmaCh10G002950	Cucurbita maxima (Rimu)	carcmaB1091
Carg15148	CmoCh10G003180	Cucurbita moschata (Rifu)	carcmoB1063
Carg15148	Lsi06G014120	Bottle gourd (USVL1VR-Ls)	carlsiB725
Carg15148	Cp4.1LG18g07080	Cucurbita pepo (Zucchini)	carcpeB1103
Carg15148	Cp4.1LG04g14580	Cucurbita pepo (Zucchini)	carcpeB1105
Carg15148	CsGy1G002910	Cucumber (Gy14) v2	carcgybB0780
Carg15148	MELO3C017226.2	Melon (DHL92) v3.6.1	carmedB0796
Carg15148	CsaV3_1G002940	Cucumber (Chinese Long) v3	carcucB0827
Carg15148	Cla97C06G125160	Watermelon (97103) v2	carwmbB0826

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15148	Carg09203	Silver-seed gourd	carcarB536

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15148	Wax gourd	carwgoB0924