Carg08322 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08322
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Plastid-lipid associated protein PAP / fibrillin family protein
Location	Cucurbita_argyrosperma_scaffold_015 : 853982 .. 857789 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATAAGGCTGCAATCAACTTAGCTCACTTGGCATGAAGATAACCCGGCAATTCATCGCCTCGTGGGGCCGACATCCGATTCTCCCCACGTACATTGCAGCGGCGAGCCAAATGCTAGCGTTCGTCTTCTGAACCTGTAGGATTTCCATGGCTGTCTCGGCTACCTCAGTTGCACCTTTGCTCGCAAAAGTAGTATCCAGGGGACGCATTGAGCCGTCGAAATCGAAGTTTCTTGCTCCAAGCTCAATATCGTCAATTTCATGTCAATCCACTTTAATTTCATCTCGTTTCCATCGGCGCAAGCCATTCGTAATTCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTTCGAACGGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTAATGTTTTGAAACTTGTTTGTTTTAGTTTGTTTTGCATATTGGAACTGGTTCTAGGGTGAAAAATAGTCGATCTAGAATCGAAAATTCGAAATTCTAGTAGAAAATGTGTCGCAAATAGAGGCCTACGTTAGTGAATGGTACTGGACTTGGAAATTTACAGAAATTCTCTCTCGATGAAGATCATTCGACTGGTAAGGGGAGTTTACATGATTTCCATTCGAGCCTCTTCAGATCTCAGAATGATCTTGGTCAACAATGCTTTAACTGTAATTGTATACTCGGTGCCATTAACTTTTGCTCGGATTTCATAATTTTCATTGCGGAATGGCGATTTTACTCTTTGAAACAGGTTACAGGAAGTGATAGAGGAGTTTTACTAACTGAAGGAAAACATAAAGAGGTTGCTGAATTGGCTCAAGAATTGCAAAAATATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGGTAATATTTCAAACAGTTCTACTGGTTCTTGTTGGATATGCTTGAATATACATCTACTCATCTTGCATATGGACCCATGTTTGATCTTTATTTTCGCTTCTGTTTGAAAACAAGAAAGTATAAGAAATGATTTCATATCTGCCTTTTTGAAATGCCAAAAATGATTTGAATTCTTCATCTTGTCTGGCTGTTTGTTGAAAAGGAAATGAAAATAATTGTTTTACCTATATAGTACTTCAGGCCTAATTTAGAAACTAAAACATGACTAGTTTAATCTGAAAATCTACGAAATCATGAGAAATCCAGCCATTTTTTTCTTGAATTTGGCAGGTTCTTAAACAATTTCGGTTCAATTACAAATTTAGTCTCTAAACTTTATAGTTTTCTTGAAAATTACAAATTTAGTTTAAGAGATTTAAGATAAATTACTTTTTACAAGTTTTGAATTTGTCAAGAATCTACTAGACTCAAAATTGAAAATTTAGGGTCGTAGTAGAGATATGTAAAAGTTACGACACCAAATAGACAAAACTTCAAAATTCTAGAACTAAATTTATGATTTAACATTGTTTTATTTGACGGGATAGCAAATATCTGAATCGAGTTGAAATGTGTTGGAATTTAAAAGCATGCTAGAACCCAAAAGAGAATACTTCAACCCAGTTGTTGCTCATTTTTCAGCTCTAGTTTGACTAACATGATTAAGTGCTATCTCAGATTGGGATGTTGTTTATTGCTCTGTGCCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGGTGTGGAAGCTCCTGATACTATCAGAAACAAGGTGTCCTTTTCTGCTCTTGGTTTCCTAGATGGACAGGTCTCTTTGACAGGTACAACTTTAAAACTTCCTCTGTAAACAATAAAATTTGAGACCTCTATTCGTGAACATATCAGAAAATTAAATCAATGGCTGGAAAACCAAACCAAGGTCACAGTAACATAGCTGACATAGCCTCTGGATTTTGGTTGACTTGCTGCGATTTTTTTCATAAGAATTAGTCGCTCCTAACTTTGTACCTCAAGAAACTAAATCAGCTGTCCATGGTCATTCAGACCTTAGATTAAGTGTTACTTCTCAAAAGTCATCTTTGGAAACTACTTTTATAACAGTCCATGACTACTTTTATAACAGTCCAACCCCACCGCTCATAGATATTGTCCGCTTTGGCCCGTTATGTATCACTACTAGCCTCATGATTTTAAAACGCGTCTACTAGGGGAGGCTTCCACTCCTGAATGTTTCGTTTTCCTCTCCAATCAATATGGGATCTCACAAACACGGTTTTAAAATGTGTTTACTAGGGAAAGGTTTCCACACCCTTATAAGAAATGTTTCGTTCCCCTCTCCAACCAATGTGAAATCTCATAAACATGGTTTTAAAACATGCCTAGTAGGGAGAGGTTTTCATACTCTTATAAGAAATGTTCCGACCAAAGTCTAGCCCAAGTCCGGCCGGAAAGTCTCTCTGTACCAATCAGTTGAGTCTGCTAACTCGTTGGGAGAAAGAGAATGAAAGCTGTTGCGATGAGACACTGACATTTCCGTAAAGTGAACGTGCCCAGTTCCCCTTTCCAACCAACATGGGATCTCACAAATACAGTTTTAAAACGTGTCTATTAGGGAGAGGGAAACGAAACATTCTTTGTAAAGTTGTGGGAACCTCTCCCTAGTAGATGCATTCTAAAACCGTGAGGCCAACGACGAATACAAAACGAGCAAAAGCAAACAATATCTATTAGTAGTAGACTCATGGACCAAGTTTTAAGAATTCAAGACGCAATCCTAACTTTTAGAATTGATTTGGTTGGTTATGTTTCATCTAGTGCCTTCAATTTACATGTCGTTTCGATGATGGTGGAGATTCTCATGAATTCTTTTAGATTGGAGTCCAATCTCGTAGTCAGTTGTGAGCTCTTTTGGGGGCTTTTGTTTCTACGCCATTTCAGAATATTCAGTAGTTTATCATATATATCATATTTGATATTTTATTAGAAGACAAGTTTGATATTTTATTAAAAGACAAATATCGAGATATTTACCTTCTTAGCATATGTATCTTTTCATTTATTATTATTTATATTTATTACTCTCTCCATGTCCTTTAATTTATTTAATTATAAATAGATAACTTTCACACTATTTAGGTGAAGCAGATTAAGCAAAGATTCTCACCCTGATATATTCTTTTTCATTTTGCTCCATGAAATCGTGTTTCTTCTTACCAACAAACAAAAAAATGCCAGGTAAATTGAAGGCTCTGGATGATAAATGGATCAAAGTTGTGTTCGAGCCACCTGAACTAAAAGTCGGCGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAAATTACATACATTGATGACAAAATTCGTCTCGGAAAGGGCTCTAGAGGTTCATTATTTGTCTTCCAAAGACGGGTTTGAAGCTACGGAGTTAAATTGTGATTAATAATGCTCTTTTCATATCTCTATGCTAATTTTTGTTCCTAATGACTCGTGTAGAAAGCTATTAATATTATTATAGGCCTTTTTTAGCCCTTTGCTTCCATAATACTCCTAAATTTGCAACAATTTAGCAACTCTATAGGTGTTGTATAAATAGTGATAGATCTAGCTAGTTGCATTTTATGTTGACGTAGGATATACAAATATATTTATGTTTATGTAATAGATCTCGACGTGCTCATACCTTTGTCTATTGGTAATAAGTAATGATGCCATGAAAATTATATTTGAATATAAAAGATACACTTTTATATTAATCTATTTTATTTTTTGCTTTTTTCATTAACAATATTATTGATATTCAATCTCTATGTATTTATCAATATATTTATCATTTTAAAGTCATTAAACATATAA

mRNA sequence

AAAGATAAGGCTGCAATCAACTTAGCTCACTTGGCATGAAGATAACCCGGCAATTCATCGCCTCGTGGGGCCGACATCCGATTCTCCCCACGTACATTGCAGCGGCGAGCCAAATGCTAGCGTTCGTCTTCTGAACCTGTAGGATTTCCATGGCTGTCTCGGCTACCTCAGTTGCACCTTTGCTCGCAAAAGTAGTATCCAGGGGACGCATTGAGCCGTCGAAATCGAAGTTTCTTGCTCCAAGCTCAATATCGTCAATTTCATGTCAATCCACTTTAATTTCATCTCGTTTCCATCGGCGCAAGCCATTCGTAATTCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTTCGAACGGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTTACAGGAAGTGATAGAGGAGTTTTACTAACTGAAGGAAAACATAAAGAGGTTGCTGAATTGGCTCAAGAATTGCAAAAATATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGATTGGGATGTTGTTTATTGCTCTGTGCCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGGTGTGGAAGCTCCTGATACTATCAGAAACAAGGTGTCCTTTTCTGCTCTTGGTTTCCTAGATGGACAGGTCTCTTTGACAGTTGTGTTCGAGCCACCTGAACTAAAAGTCGGCGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAAATTACATACATTGATGACAAAATTCGTCTCGGAAAGGGCTCTAGAGGTTCATTATTTGTCTTCCAAAGACGGTCATTAAACATATAA

Coding sequence (CDS)

ATGGCTGTCTCGGCTACCTCAGTTGCACCTTTGCTCGCAAAAGTAGTATCCAGGGGACGCATTGAGCCGTCGAAATCGAAGTTTCTTGCTCCAAGCTCAATATCGTCAATTTCATGTCAATCCACTTTAATTTCATCTCGTTTCCATCGGCGCAAGCCATTCGTAATTCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTTCGAACGGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTTACAGGAAGTGATAGAGGAGTTTTACTAACTGAAGGAAAACATAAAGAGGTTGCTGAATTGGCTCAAGAATTGCAAAAATATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGATTGGGATGTTGTTTATTGCTCTGTGCCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGGTGTGGAAGCTCCTGATACTATCAGAAACAAGGTGTCCTTTTCTGCTCTTGGTTTCCTAGATGGACAGGTCTCTTTGACAGTTGTGTTCGAGCCACCTGAACTAAAAGTCGGCGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAAATTACATACATTGATGACAAAATTCGTCTCGGAAAGGGCTCTAGAGGTTCATTATTTGTCTTCCAAAGACGGTCATTAAACATATAA

Protein sequence

MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVSLTVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFVFQRRSLNI

Homology

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BLAST of Carg08322 vs. NCBI nr
Match: XP_022929601.1 (probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 442.2 bits (1136), Expect = 1.1e-120
Identity = 230/244 (94.26%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MAVSATSVAPLLAKVVS GRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV
Sbjct: 1   MAVSATSVAPLLAKVVSSGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSD GVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI
Sbjct: 61  SISDPQVRTGPDDLVASILSKVTGSDGGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS
Sbjct: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV
Sbjct: 181 LTGKLKALDDKWIKVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 240

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BLAST of Carg08322 vs. NCBI nr
Match: XP_022997459.1 (probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita maxima])

HSP 1 Score: 433.0 bits (1112), Expect = 6.7e-118
Identity = 226/244 (92.62%), Postives = 227/244 (93.03%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MAVSATSVAPLLAKVVSRGRIEPSKSKFLA SS SSI CQST ISSRFHRRKPFVIQASV
Sbjct: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLASSSTSSILCQSTSISSRFHRRKPFVIQASV 60

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAE+AQELQKYCVNEPVKCPLI
Sbjct: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAEVAQELQKYCVNEPVKCPLI 120

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTIRNKVSFSALGFLDGQVS
Sbjct: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIRNKVSFSALGFLDGQVS 180

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV
Sbjct: 181 LTGKLKALDDKWIKVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 240

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BLAST of Carg08322 vs. NCBI nr
Match: XP_008445102.1 (PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 5.0e-105
Identity = 205/244 (84.02%), Postives = 212/244 (86.89%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL PSS SSI C S  ISS FHRRKP  IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPSSASSIPCHSISISSPFHRRKPLGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S SDPQVRTGPDDLVASILSKVTGSDRGVLL+E KHKEVAE+AQELQKYCVNEPVKCPLI
Sbjct: 64  STSDPQVRTGPDDLVASILSKVTGSDRGVLLSEEKHKEVAEVAQELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEFRYGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFRYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322 vs. NCBI nr
Match: XP_004138759.1 (PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis sativus] >KGN62883.1 hypothetical protein Csa_2G379140 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 202/244 (82.79%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL P+S SS  C S  ISS FHRRKPF IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPTSTSSFPCHSISISSPFHRRKPFGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSDRGVLL+E +HKEVAE+A+ELQKYCVNEPVKCPLI
Sbjct: 64  SISDPQVRTGPDDLVASILSKVTGSDRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQAVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEF+YGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFQYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322 vs. NCBI nr
Match: XP_022132330.1 (probable plastid-lipid-associated protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 381.3 bits (978), Expect = 2.3e-102
Identity = 199/244 (81.56%), Postives = 209/244 (85.66%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L AK V RGR+EPS+SKFLA  S SS+ CQS  ISS  +RRKP VI ASV
Sbjct: 4   MAASATSVALLPAKSVFRGRVEPSRSKFLASRSTSSVPCQSASISSSSYRRKPLVILASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S SDPQVRTGPD LVASILSKVT SDRGVLLTE KHKEVAE+AQELQ YCVNEPVKCPLI
Sbjct: 64  STSDPQVRTGPDHLVASILSKVTQSDRGVLLTEEKHKEVAEVAQELQNYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDT++NKVSFSALGFLDG VS
Sbjct: 124 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTVKNKVSFSALGFLDGHVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFEPPELKVGG EFRYGGESEV+LQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLKALDDKWIQVVFEPPELKVGGFEFRYGGESEVELQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322 vs. TAIR10
Match: AT5G19940.1 (Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 263.8 bits (673), Expect = 9.8e-71
Identity = 126/198 (63.64%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 47  RFHRRKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQEL 106
           R   R+  ++ +SVS  + ++RTGPDDL++++LSKV  SD GV L+  +HKEVA++A EL
Sbjct: 41  RSRSRRLGLVVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGEL 100

Query: 107 QKYCVNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNK 166
           QKYCV EPVK PLIFGDW+VVYCS PTSPGGGYRS +GR+FFKTKEMIQ ++APD +RNK
Sbjct: 101 QKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNK 160

Query: 167 VSFSALGFLDGQVSLT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDD 226
           VS +A GFLDG VSLT            V+FEPPE+KVG LEF+YG ESEV+L+ITY+D+
Sbjct: 161 VSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDE 220

Query: 227 KIRLGKGSRGSLFVFQRR 233
           K+RLG GS+GSLFVF+RR
Sbjct: 221 KLRLGLGSKGSLFVFRRR 238

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BLAST of Carg08322 vs. TAIR10
Match: AT3G26070.1 (Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-06
Identity = 35/165 (21.21%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 74  LVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKY-CVNEPVKCPLIFGDWDVVYCSVP 133
           L   +L  +   +RG   +      + +LA++++      EP+K  L+ G W+++Y    
Sbjct: 74  LKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIY---- 133

Query: 134 TSPGGGYRSAVGRIFFKTKEMIQGVEAPDT--IRNKVSFSALGFLDGQV----SLTVVFE 193
            +       A    F ++    Q +   DT  ++N  ++     + G +    S  V  +
Sbjct: 134 -TTSASILQAKKPRFLRSITNYQSINV-DTLKVQNMETWPFYNSVTGDIKPLNSKKVAVK 193

Query: 194 PPELKV-GGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFVFQ 231
               K+ G +  +    +  +L+ITY+D+++RL +G +G+LF+ +
Sbjct: 194 LQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILK 232

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BLAST of Carg08322 vs. Swiss-Prot
Match: sp|Q941D3|PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP8 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 126/198 (63.64%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 47  RFHRRKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQEL 106
           R   R+  ++ +SVS  + ++RTGPDDL++++LSKV  SD GV L+  +HKEVA++A EL
Sbjct: 41  RSRSRRLGLVVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGEL 100

Query: 107 QKYCVNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNK 166
           QKYCV EPVK PLIFGDW+VVYCS PTSPGGGYRS +GR+FFKTKEMIQ ++APD +RNK
Sbjct: 101 QKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNK 160

Query: 167 VSFSALGFLDGQVSLT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDD 226
           VS +A GFLDG VSLT            V+FEPPE+KVG LEF+YG ESEV+L+ITY+D+
Sbjct: 161 VSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDE 220

Query: 227 KIRLGKGSRGSLFVFQRR 233
           K+RLG GS+GSLFVF+RR
Sbjct: 221 KLRLGLGSKGSLFVFRRR 238

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BLAST of Carg08322 vs. TrEMBL
Match: tr|A0A1S3BBV9|A0A1S3BBV9_CUCME (probable plastid-lipid-associated protein 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488243 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 3.3e-105
Identity = 205/244 (84.02%), Postives = 212/244 (86.89%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL PSS SSI C S  ISS FHRRKP  IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPSSASSIPCHSISISSPFHRRKPLGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S SDPQVRTGPDDLVASILSKVTGSDRGVLL+E KHKEVAE+AQELQKYCVNEPVKCPLI
Sbjct: 64  STSDPQVRTGPDDLVASILSKVTGSDRGVLLSEEKHKEVAEVAQELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEFRYGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFRYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322 vs. TrEMBL
Match: tr|A0A0A0LM49|A0A0A0LM49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379140 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 9.6e-105
Identity = 202/244 (82.79%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL P+S SS  C S  ISS FHRRKPF IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPTSTSSFPCHSISISSPFHRRKPFGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSDRGVLL+E +HKEVAE+A+ELQKYCVNEPVKCPLI
Sbjct: 64  SISDPQVRTGPDDLVASILSKVTGSDRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQAVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEF+YGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFQYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

[Close]

BLAST of Carg08322 vs. TrEMBL
Match: tr|A0A2P5G198|A0A2P5G198_9ROSA (Plastid lipid-associated protein/fibrillin conserved domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_001100 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 5.9e-78
Identity = 159/242 (65.70%), Postives = 186/242 (76.86%), Query Frame = 0


Query: 4   SATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASVSIS 63
           +A+S+A LL      G  EPS+ KFL   S  +    S    SRF + K   + ASVS+ 
Sbjct: 3   TASSLA-LLPSTTFGGLSEPSRPKFLDFRSKPTNLILSVSSHSRFCKGKTLRVSASVSVP 62

Query: 64  DPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLIFGD 123
           + +V+TGP DLV SILSKVT SDRGVLL + +H++VAE+AQELQKYCVNEPVKCPLIFGD
Sbjct: 63  NLEVQTGPGDLVDSILSKVTQSDRGVLLKKEEHEKVAEVAQELQKYCVNEPVKCPLIFGD 122

Query: 124 WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVSL-- 183
           WDVVYCSVPTSPGGGYRSA+GR+   TKEMIQG+EAPD ++NKV FSA GFLDG+VSL  
Sbjct: 123 WDVVYCSVPTSPGGGYRSALGRLVLTTKEMIQGIEAPDIVKNKVIFSAFGFLDGEVSLKG 182

Query: 184 ----------TVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFVFQR 234
                      V+FEPPELKVGGLEFRYGG SEV+L+ITYIDDKIRLGKGS+GSLFVFQR
Sbjct: 183 KLTALDDEWVQVIFEPPELKVGGLEFRYGGVSEVKLRITYIDDKIRLGKGSKGSLFVFQR 242

[Close]

BLAST of Carg08322 vs. TrEMBL
Match: tr|M5Y016|M5Y016_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G462100 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.0e-77
Identity = 159/244 (65.16%), Postives = 188/244 (77.05%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA + TS +  L+    RG  EPSK +FL   S  +    + L  +R  R K   I ASV
Sbjct: 1   MAAALTS-SLALSPSTFRGGPEPSKPQFLNFCSKPTNLAFAILPYTRCRRHKTLRILASV 60

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S+S+PQV TGP++L ASILSKVT SDRGVLL + + +EVAE+A++LQ +CV+EPVKCPLI
Sbjct: 61  SVSNPQVLTGPEELSASILSKVTHSDRGVLLKKEEQEEVAEVAEKLQSFCVSEPVKCPLI 120

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRS +GR+ FKTKEMIQ +EAPD ++NKVSFSA GFLDG+VS
Sbjct: 121 FGDWDVVYCSVPTSPGGGYRSTLGRLVFKTKEMIQVIEAPDIVKNKVSFSAFGFLDGEVS 180

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            V+FEPPELKVG LEFRYGGESEV+LQITYIDDK+RLGKGS+GSLFV
Sbjct: 181 LTGKLKALDDKWIQVIFEPPELKVGALEFRYGGESEVKLQITYIDDKVRLGKGSKGSLFV 240

[Close]

BLAST of Carg08322 vs. TrEMBL
Match: tr|V4ULX1|V4ULX1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009324mg PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.2e-77
Identity = 149/195 (76.41%), Postives = 163/195 (83.59%), Query Frame = 0


Query: 51  RKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYC 110
           R    I  +VSIS P +RTGPDDLVASILSKV  SD GV L + +HKEVAE+AQELQKYC
Sbjct: 44  RTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYC 103

Query: 111 VNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFS 170
           V  PVKCPLIFG+WDVVYCSVPTSPGGGYRSA GR+FFKTKEMIQ VEAPDT+RNKVSF+
Sbjct: 104 VEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFT 163

Query: 171 ALGFLDGQVSL------------TVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRL 230
           ALGFLDG+VSL             VVFEPPELKVGGLEFRYGG+SEV+LQITYID+KIRL
Sbjct: 164 ALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRL 223

Query: 231 GKGSRGSLFVFQRRS 234
           G GSRGSLFVFQRR+
Sbjct: 224 GLGSRGSLFVFQRRT 238

The following BLAST results are available for this feature:

BLAST of Carg08322 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929601.1	1.1e-120	94.26	probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita moschata]	[more]
XP_022997459.1	6.7e-118	92.62	probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita maxima]	[more]
XP_008445102.1	5.0e-105	84.02	PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis m...	[more]
XP_004138759.1	1.5e-104	82.79	PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis s...	[more]
XP_022132330.1	2.3e-102	81.56	probable plastid-lipid-associated protein 8, chloroplastic [Momordica charantia]	[more]

BLAST of Carg08322 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19940.1	9.8e-71	63.64	Plastid-lipid associated protein PAP / fibrillin family protein	[more]
AT3G26070.1	8.5e-06	21.21	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

BLAST of Carg08322 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q941D3\|PAP8_ARATH	1.8e-69	63.64	Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of Carg08322 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBV9\|A0A1S3BBV9_CUCME	3.3e-105	84.02	probable plastid-lipid-associated protein 8, chloroplastic OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0LM49\|A0A0A0LM49_CUCSA	9.6e-105	82.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379140 PE=4 SV=1	[more]
tr\|A0A2P5G198\|A0A2P5G198_9ROSA	5.9e-78	65.70	Plastid lipid-associated protein/fibrillin conserved domain containing protein O...	[more]
tr\|M5Y016\|M5Y016_PRUPE	1.0e-77	65.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G462100 PE=4 SV=1	[more]
tr\|V4ULX1\|V4ULX1_9ROSI	2.2e-77	76.41	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009324mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08322-RA	Carg08322-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 202..229 e-value: 4.3E-5 score: 23.4 coord: 76..188 e-value: 5.4E-6 score: 26.4
None	No IPR available	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 25..232
None	No IPR available	PANTHER	PTHR31906:SF12	SUBFAMILY NOT NAMED	coord: 25..232

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08322	Cla022268	Watermelon (97103) v1	carwmB0058
Carg08322	Csa2G379140	Cucumber (Chinese Long) v2	carcuB0059
Carg08322	MELO3C011201	Melon (DHL92) v3.5.1	carmeB0058
Carg08322	ClCG08G012780	Watermelon (Charleston Gray)	carwcgB0063
Carg08322	CSPI02G22890	Wild cucumber (PI 183967)	carcpiB0063
Carg08322	Cucsa.161880	Cucumber (Gy14) v1	carcgyB0066
Carg08322	CmaCh05G006380	Cucurbita maxima (Rimu)	carcmaB0083
Carg08322	CmoCh05G006630	Cucurbita moschata (Rifu)	carcmoB0087
Carg08322	Lsi08G011390	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08322	Cp4.1LG11g05560	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08322	CsGy2G022640	Cucumber (Gy14) v2	carcgybB0060
Carg08322	MELO3C011201.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08322	Cla97C08G156030	Watermelon (97103) v2	carwmbB0061
Carg08322	Bhi04G000853	Wax gourd	carwgoB0069

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08322	Silver-seed gourd	carcarB065
Carg08322	Silver-seed gourd	carcarB067
Carg08322	Silver-seed gourd	carcarB071
Carg08322	Silver-seed gourd	carcarB072
Carg08322	Cucurbita maxima (Rimu)	carcmaB0074
Carg08322	Cucurbita maxima (Rimu)	carcmaB0079
Carg08322	Cucurbita maxima (Rimu)	carcmaB0081
Carg08322	Cucurbita moschata (Rifu)	carcmoB0078
Carg08322	Cucurbita moschata (Rifu)	carcmoB0083
Carg08322	Cucurbita moschata (Rifu)	carcmoB0085
Carg08322	Cucurbita pepo (Zucchini)	carcpeB0082
Carg08322	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08322	Cucurbita pepo (Zucchini)	carcpeB0092
Carg08322	Cucumber (Chinese Long) v3	carcucB0065