Carg08322-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08322-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Plastid-lipid associated protein PAP / fibrillin family protein
Location	Cucurbita_argyrosperma_scaffold_015 : 853982 .. 857789 (+)
Sequence length	860

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATAAGGCTGCAATCAACTTAGCTCACTTGGCATGAAGATAACCCGGCAATTCATCGCCTCGTGGGGCCGACATCCGATTCTCCCCACGTACATTGCAGCGGCGAGCCAAATGCTAGCGTTCGTCTTCTGAACCTGTAGGATTTCCATGGCTGTCTCGGCTACCTCAGTTGCACCTTTGCTCGCAAAAGTAGTATCCAGGGGACGCATTGAGCCGTCGAAATCGAAGTTTCTTGCTCCAAGCTCAATATCGTCAATTTCATGTCAATCCACTTTAATTTCATCTCGTTTCCATCGGCGCAAGCCATTCGTAATTCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTTCGAACGGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTAATGTTTTGAAACTTGTTTGTTTTAGTTTGTTTTGCATATTGGAACTGGTTCTAGGGTGAAAAATAGTCGATCTAGAATCGAAAATTCGAAATTCTAGTAGAAAATGTGTCGCAAATAGAGGCCTACGTTAGTGAATGGTACTGGACTTGGAAATTTACAGAAATTCTCTCTCGATGAAGATCATTCGACTGGTAAGGGGAGTTTACATGATTTCCATTCGAGCCTCTTCAGATCTCAGAATGATCTTGGTCAACAATGCTTTAACTGTAATTGTATACTCGGTGCCATTAACTTTTGCTCGGATTTCATAATTTTCATTGCGGAATGGCGATTTTACTCTTTGAAACAGGTTACAGGAAGTGATAGAGGAGTTTTACTAACTGAAGGAAAACATAAAGAGGTTGCTGAATTGGCTCAAGAATTGCAAAAATATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGGTAATATTTCAAACAGTTCTACTGGTTCTTGTTGGATATGCTTGAATATACATCTACTCATCTTGCATATGGACCCATGTTTGATCTTTATTTTCGCTTCTGTTTGAAAACAAGAAAGTATAAGAAATGATTTCATATCTGCCTTTTTGAAATGCCAAAAATGATTTGAATTCTTCATCTTGTCTGGCTGTTTGTTGAAAAGGAAATGAAAATAATTGTTTTACCTATATAGTACTTCAGGCCTAATTTAGAAACTAAAACATGACTAGTTTAATCTGAAAATCTACGAAATCATGAGAAATCCAGCCATTTTTTTCTTGAATTTGGCAGGTTCTTAAACAATTTCGGTTCAATTACAAATTTAGTCTCTAAACTTTATAGTTTTCTTGAAAATTACAAATTTAGTTTAAGAGATTTAAGATAAATTACTTTTTACAAGTTTTGAATTTGTCAAGAATCTACTAGACTCAAAATTGAAAATTTAGGGTCGTAGTAGAGATATGTAAAAGTTACGACACCAAATAGACAAAACTTCAAAATTCTAGAACTAAATTTATGATTTAACATTGTTTTATTTGACGGGATAGCAAATATCTGAATCGAGTTGAAATGTGTTGGAATTTAAAAGCATGCTAGAACCCAAAAGAGAATACTTCAACCCAGTTGTTGCTCATTTTTCAGCTCTAGTTTGACTAACATGATTAAGTGCTATCTCAGATTGGGATGTTGTTTATTGCTCTGTGCCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGGTGTGGAAGCTCCTGATACTATCAGAAACAAGGTGTCCTTTTCTGCTCTTGGTTTCCTAGATGGACAGGTCTCTTTGACAGGTACAACTTTAAAACTTCCTCTGTAAACAATAAAATTTGAGACCTCTATTCGTGAACATATCAGAAAATTAAATCAATGGCTGGAAAACCAAACCAAGGTCACAGTAACATAGCTGACATAGCCTCTGGATTTTGGTTGACTTGCTGCGATTTTTTTCATAAGAATTAGTCGCTCCTAACTTTGTACCTCAAGAAACTAAATCAGCTGTCCATGGTCATTCAGACCTTAGATTAAGTGTTACTTCTCAAAAGTCATCTTTGGAAACTACTTTTATAACAGTCCATGACTACTTTTATAACAGTCCAACCCCACCGCTCATAGATATTGTCCGCTTTGGCCCGTTATGTATCACTACTAGCCTCATGATTTTAAAACGCGTCTACTAGGGGAGGCTTCCACTCCTGAATGTTTCGTTTTCCTCTCCAATCAATATGGGATCTCACAAACACGGTTTTAAAATGTGTTTACTAGGGAAAGGTTTCCACACCCTTATAAGAAATGTTTCGTTCCCCTCTCCAACCAATGTGAAATCTCATAAACATGGTTTTAAAACATGCCTAGTAGGGAGAGGTTTTCATACTCTTATAAGAAATGTTCCGACCAAAGTCTAGCCCAAGTCCGGCCGGAAAGTCTCTCTGTACCAATCAGTTGAGTCTGCTAACTCGTTGGGAGAAAGAGAATGAAAGCTGTTGCGATGAGACACTGACATTTCCGTAAAGTGAACGTGCCCAGTTCCCCTTTCCAACCAACATGGGATCTCACAAATACAGTTTTAAAACGTGTCTATTAGGGAGAGGGAAACGAAACATTCTTTGTAAAGTTGTGGGAACCTCTCCCTAGTAGATGCATTCTAAAACCGTGAGGCCAACGACGAATACAAAACGAGCAAAAGCAAACAATATCTATTAGTAGTAGACTCATGGACCAAGTTTTAAGAATTCAAGACGCAATCCTAACTTTTAGAATTGATTTGGTTGGTTATGTTTCATCTAGTGCCTTCAATTTACATGTCGTTTCGATGATGGTGGAGATTCTCATGAATTCTTTTAGATTGGAGTCCAATCTCGTAGTCAGTTGTGAGCTCTTTTGGGGGCTTTTGTTTCTACGCCATTTCAGAATATTCAGTAGTTTATCATATATATCATATTTGATATTTTATTAGAAGACAAGTTTGATATTTTATTAAAAGACAAATATCGAGATATTTACCTTCTTAGCATATGTATCTTTTCATTTATTATTATTTATATTTATTACTCTCTCCATGTCCTTTAATTTATTTAATTATAAATAGATAACTTTCACACTATTTAGGTGAAGCAGATTAAGCAAAGATTCTCACCCTGATATATTCTTTTTCATTTTGCTCCATGAAATCGTGTTTCTTCTTACCAACAAACAAAAAAATGCCAGGTAAATTGAAGGCTCTGGATGATAAATGGATCAAAGTTGTGTTCGAGCCACCTGAACTAAAAGTCGGCGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAAATTACATACATTGATGACAAAATTCGTCTCGGAAAGGGCTCTAGAGGTTCATTATTTGTCTTCCAAAGACGGGTTTGAAGCTACGGAGTTAAATTGTGATTAATAATGCTCTTTTCATATCTCTATGCTAATTTTTGTTCCTAATGACTCGTGTAGAAAGCTATTAATATTATTATAGGCCTTTTTTAGCCCTTTGCTTCCATAATACTCCTAAATTTGCAACAATTTAGCAACTCTATAGGTGTTGTATAAATAGTGATAGATCTAGCTAGTTGCATTTTATGTTGACGTAGGATATACAAATATATTTATGTTTATGTAATAGATCTCGACGTGCTCATACCTTTGTCTATTGGTAATAAGTAATGATGCCATGAAAATTATATTTGAATATAAAAGATACACTTTTATATTAATCTATTTTATTTTTTGCTTTTTTCATTAACAATATTATTGATATTCAATCTCTATGTATTTATCAATATATTTATCATTTTAAAGTCATTAAACATATAA

mRNA sequence

AAAGATAAGGCTGCAATCAACTTAGCTCACTTGGCATGAAGATAACCCGGCAATTCATCGCCTCGTGGGGCCGACATCCGATTCTCCCCACGTACATTGCAGCGGCGAGCCAAATGCTAGCGTTCGTCTTCTGAACCTGTAGGATTTCCATGGCTGTCTCGGCTACCTCAGTTGCACCTTTGCTCGCAAAAGTAGTATCCAGGGGACGCATTGAGCCGTCGAAATCGAAGTTTCTTGCTCCAAGCTCAATATCGTCAATTTCATGTCAATCCACTTTAATTTCATCTCGTTTCCATCGGCGCAAGCCATTCGTAATTCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTTCGAACGGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTTACAGGAAGTGATAGAGGAGTTTTACTAACTGAAGGAAAACATAAAGAGGTTGCTGAATTGGCTCAAGAATTGCAAAAATATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGATTGGGATGTTGTTTATTGCTCTGTGCCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGGTGTGGAAGCTCCTGATACTATCAGAAACAAGGTGTCCTTTTCTGCTCTTGGTTTCCTAGATGGACAGGTCTCTTTGACAGTTGTGTTCGAGCCACCTGAACTAAAAGTCGGCGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAAATTACATACATTGATGACAAAATTCGTCTCGGAAAGGGCTCTAGAGGTTCATTATTTGTCTTCCAAAGACGGTCATTAAACATATAA

Coding sequence (CDS)

ATGGCTGTCTCGGCTACCTCAGTTGCACCTTTGCTCGCAAAAGTAGTATCCAGGGGACGCATTGAGCCGTCGAAATCGAAGTTTCTTGCTCCAAGCTCAATATCGTCAATTTCATGTCAATCCACTTTAATTTCATCTCGTTTCCATCGGCGCAAGCCATTCGTAATTCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTTCGAACGGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTTACAGGAAGTGATAGAGGAGTTTTACTAACTGAAGGAAAACATAAAGAGGTTGCTGAATTGGCTCAAGAATTGCAAAAATATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGATTGGGATGTTGTTTATTGCTCTGTGCCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGGTGTGGAAGCTCCTGATACTATCAGAAACAAGGTGTCCTTTTCTGCTCTTGGTTTCCTAGATGGACAGGTCTCTTTGACAGTTGTGTTCGAGCCACCTGAACTAAAAGTCGGCGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAAATTACATACATTGATGACAAAATTCGTCTCGGAAAGGGCTCTAGAGGTTCATTATTTGTCTTCCAAAGACGGTCATTAAACATATAA

Protein sequence

MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVSLTVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFVFQRRSLNI

Homology

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BLAST of Carg08322-RA vs. NCBI nr
Match: XP_022929601.1 (probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 442.2 bits (1136), Expect = 1.1e-120
Identity = 230/244 (94.26%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MAVSATSVAPLLAKVVS GRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV
Sbjct: 1   MAVSATSVAPLLAKVVSSGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSD GVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI
Sbjct: 61  SISDPQVRTGPDDLVASILSKVTGSDGGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS
Sbjct: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV
Sbjct: 181 LTGKLKALDDKWIKVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 240

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BLAST of Carg08322-RA vs. NCBI nr
Match: XP_022997459.1 (probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita maxima])

HSP 1 Score: 433.0 bits (1112), Expect = 6.7e-118
Identity = 226/244 (92.62%), Postives = 227/244 (93.03%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MAVSATSVAPLLAKVVSRGRIEPSKSKFLA SS SSI CQST ISSRFHRRKPFVIQASV
Sbjct: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLASSSTSSILCQSTSISSRFHRRKPFVIQASV 60

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAE+AQELQKYCVNEPVKCPLI
Sbjct: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAEVAQELQKYCVNEPVKCPLI 120

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTIRNKVSFSALGFLDGQVS
Sbjct: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIRNKVSFSALGFLDGQVS 180

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV
Sbjct: 181 LTGKLKALDDKWIKVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 240

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BLAST of Carg08322-RA vs. NCBI nr
Match: XP_008445102.1 (PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 5.0e-105
Identity = 205/244 (84.02%), Postives = 212/244 (86.89%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL PSS SSI C S  ISS FHRRKP  IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPSSASSIPCHSISISSPFHRRKPLGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S SDPQVRTGPDDLVASILSKVTGSDRGVLL+E KHKEVAE+AQELQKYCVNEPVKCPLI
Sbjct: 64  STSDPQVRTGPDDLVASILSKVTGSDRGVLLSEEKHKEVAEVAQELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEFRYGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFRYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322-RA vs. NCBI nr
Match: XP_004138759.1 (PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis sativus] >KGN62883.1 hypothetical protein Csa_2G379140 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 202/244 (82.79%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL P+S SS  C S  ISS FHRRKPF IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPTSTSSFPCHSISISSPFHRRKPFGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSDRGVLL+E +HKEVAE+A+ELQKYCVNEPVKCPLI
Sbjct: 64  SISDPQVRTGPDDLVASILSKVTGSDRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQAVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEF+YGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFQYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322-RA vs. NCBI nr
Match: XP_022132330.1 (probable plastid-lipid-associated protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 381.3 bits (978), Expect = 2.3e-102
Identity = 199/244 (81.56%), Postives = 209/244 (85.66%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L AK V RGR+EPS+SKFLA  S SS+ CQS  ISS  +RRKP VI ASV
Sbjct: 4   MAASATSVALLPAKSVFRGRVEPSRSKFLASRSTSSVPCQSASISSSSYRRKPLVILASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S SDPQVRTGPD LVASILSKVT SDRGVLLTE KHKEVAE+AQELQ YCVNEPVKCPLI
Sbjct: 64  STSDPQVRTGPDHLVASILSKVTQSDRGVLLTEEKHKEVAEVAQELQNYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDT++NKVSFSALGFLDG VS
Sbjct: 124 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTVKNKVSFSALGFLDGHVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFEPPELKVGG EFRYGGESEV+LQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLKALDDKWIQVVFEPPELKVGGFEFRYGGESEVELQITYIDDKVRLGKGSRGSLFV 243

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BLAST of Carg08322-RA vs. TAIR10
Match: AT5G19940.1 (Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 263.8 bits (673), Expect = 9.8e-71
Identity = 126/198 (63.64%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 47  RFHRRKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQEL 106
           R   R+  ++ +SVS  + ++RTGPDDL++++LSKV  SD GV L+  +HKEVA++A EL
Sbjct: 41  RSRSRRLGLVVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGEL 100

Query: 107 QKYCVNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNK 166
           QKYCV EPVK PLIFGDW+VVYCS PTSPGGGYRS +GR+FFKTKEMIQ ++APD +RNK
Sbjct: 101 QKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNK 160

Query: 167 VSFSALGFLDGQVSLT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDD 226
           VS +A GFLDG VSLT            V+FEPPE+KVG LEF+YG ESEV+L+ITY+D+
Sbjct: 161 VSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDE 220

Query: 227 KIRLGKGSRGSLFVFQRR 233
           K+RLG GS+GSLFVF+RR
Sbjct: 221 KLRLGLGSKGSLFVFRRR 238

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BLAST of Carg08322-RA vs. TAIR10
Match: AT3G26070.1 (Plastid-lipid associated protein PAP / fibrillin family protein)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-06
Identity = 35/165 (21.21%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 74  LVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKY-CVNEPVKCPLIFGDWDVVYCSVP 133
           L   +L  +   +RG   +      + +LA++++      EP+K  L+ G W+++Y    
Sbjct: 74  LKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIY---- 133

Query: 134 TSPGGGYRSAVGRIFFKTKEMIQGVEAPDT--IRNKVSFSALGFLDGQV----SLTVVFE 193
            +       A    F ++    Q +   DT  ++N  ++     + G +    S  V  +
Sbjct: 134 -TTSASILQAKKPRFLRSITNYQSINV-DTLKVQNMETWPFYNSVTGDIKPLNSKKVAVK 193

Query: 194 PPELKV-GGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFVFQ 231
               K+ G +  +    +  +L+ITY+D+++RL +G +G+LF+ +
Sbjct: 194 LQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILK 232

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BLAST of Carg08322-RA vs. Swiss-Prot
Match: sp|Q941D3|PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP8 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 126/198 (63.64%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 47  RFHRRKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQEL 106
           R   R+  ++ +SVS  + ++RTGPDDL++++LSKV  SD GV L+  +HKEVA++A EL
Sbjct: 41  RSRSRRLGLVVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGEL 100

Query: 107 QKYCVNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNK 166
           QKYCV EPVK PLIFGDW+VVYCS PTSPGGGYRS +GR+FFKTKEMIQ ++APD +RNK
Sbjct: 101 QKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNK 160

Query: 167 VSFSALGFLDGQVSLT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDD 226
           VS +A GFLDG VSLT            V+FEPPE+KVG LEF+YG ESEV+L+ITY+D+
Sbjct: 161 VSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDE 220

Query: 227 KIRLGKGSRGSLFVFQRR 233
           K+RLG GS+GSLFVF+RR
Sbjct: 221 KLRLGLGSKGSLFVFRRR 238

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BLAST of Carg08322-RA vs. TrEMBL
Match: tr|A0A1S3BBV9|A0A1S3BBV9_CUCME (probable plastid-lipid-associated protein 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488243 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 3.3e-105
Identity = 205/244 (84.02%), Postives = 212/244 (86.89%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL PSS SSI C S  ISS FHRRKP  IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPSSASSIPCHSISISSPFHRRKPLGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S SDPQVRTGPDDLVASILSKVTGSDRGVLL+E KHKEVAE+AQELQKYCVNEPVKCPLI
Sbjct: 64  STSDPQVRTGPDDLVASILSKVTGSDRGVLLSEEKHKEVAEVAQELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEFRYGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFRYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

[Close]

BLAST of Carg08322-RA vs. TrEMBL
Match: tr|A0A0A0LM49|A0A0A0LM49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379140 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 9.6e-105
Identity = 202/244 (82.79%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA SATSVA L +K+V RGR E S+SKFL P+S SS  C S  ISS FHRRKPF IQASV
Sbjct: 4   MAASATSVALLPSKLVFRGRFEQSRSKFLTPTSTSSFPCHSISISSPFHRRKPFGIQASV 63

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           SISDPQVRTGPDDLVASILSKVTGSDRGVLL+E +HKEVAE+A+ELQKYCVNEPVKCPLI
Sbjct: 64  SISDPQVRTGPDDLVASILSKVTGSDRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLI 123

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FG WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQ VEAPDTI+NKVSFSALGFLDGQVS
Sbjct: 124 FGAWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQAVEAPDTIKNKVSFSALGFLDGQVS 183

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            VVFE PELKVGGLEF+YGGESEVQLQITYIDDK+RLGKGSRGSLFV
Sbjct: 184 LTGKLTALDDKWIRVVFESPELKVGGLEFQYGGESEVQLQITYIDDKVRLGKGSRGSLFV 243

[Close]

BLAST of Carg08322-RA vs. TrEMBL
Match: tr|A0A2P5G198|A0A2P5G198_9ROSA (Plastid lipid-associated protein/fibrillin conserved domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_001100 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 5.9e-78
Identity = 159/242 (65.70%), Postives = 186/242 (76.86%), Query Frame = 0


Query: 4   SATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASVSIS 63
           +A+S+A LL      G  EPS+ KFL   S  +    S    SRF + K   + ASVS+ 
Sbjct: 3   TASSLA-LLPSTTFGGLSEPSRPKFLDFRSKPTNLILSVSSHSRFCKGKTLRVSASVSVP 62

Query: 64  DPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLIFGD 123
           + +V+TGP DLV SILSKVT SDRGVLL + +H++VAE+AQELQKYCVNEPVKCPLIFGD
Sbjct: 63  NLEVQTGPGDLVDSILSKVTQSDRGVLLKKEEHEKVAEVAQELQKYCVNEPVKCPLIFGD 122

Query: 124 WDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVSL-- 183
           WDVVYCSVPTSPGGGYRSA+GR+   TKEMIQG+EAPD ++NKV FSA GFLDG+VSL  
Sbjct: 123 WDVVYCSVPTSPGGGYRSALGRLVLTTKEMIQGIEAPDIVKNKVIFSAFGFLDGEVSLKG 182

Query: 184 ----------TVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFVFQR 234
                      V+FEPPELKVGGLEFRYGG SEV+L+ITYIDDKIRLGKGS+GSLFVFQR
Sbjct: 183 KLTALDDEWVQVIFEPPELKVGGLEFRYGGVSEVKLRITYIDDKIRLGKGSKGSLFVFQR 242

[Close]

BLAST of Carg08322-RA vs. TrEMBL
Match: tr|M5Y016|M5Y016_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G462100 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.0e-77
Identity = 159/244 (65.16%), Postives = 188/244 (77.05%), Query Frame = 0


Query: 1   MAVSATSVAPLLAKVVSRGRIEPSKSKFLAPSSISSISCQSTLISSRFHRRKPFVIQASV 60
           MA + TS +  L+    RG  EPSK +FL   S  +    + L  +R  R K   I ASV
Sbjct: 1   MAAALTS-SLALSPSTFRGGPEPSKPQFLNFCSKPTNLAFAILPYTRCRRHKTLRILASV 60

Query: 61  SISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYCVNEPVKCPLI 120
           S+S+PQV TGP++L ASILSKVT SDRGVLL + + +EVAE+A++LQ +CV+EPVKCPLI
Sbjct: 61  SVSNPQVLTGPEELSASILSKVTHSDRGVLLKKEEQEEVAEVAEKLQSFCVSEPVKCPLI 120

Query: 121 FGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFSALGFLDGQVS 180
           FGDWDVVYCSVPTSPGGGYRS +GR+ FKTKEMIQ +EAPD ++NKVSFSA GFLDG+VS
Sbjct: 121 FGDWDVVYCSVPTSPGGGYRSTLGRLVFKTKEMIQVIEAPDIVKNKVSFSAFGFLDGEVS 180

Query: 181 LT------------VVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRLGKGSRGSLFV 233
           LT            V+FEPPELKVG LEFRYGGESEV+LQITYIDDK+RLGKGS+GSLFV
Sbjct: 181 LTGKLKALDDKWIQVIFEPPELKVGALEFRYGGESEVKLQITYIDDKVRLGKGSKGSLFV 240

[Close]

BLAST of Carg08322-RA vs. TrEMBL
Match: tr|V4ULX1|V4ULX1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009324mg PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.2e-77
Identity = 149/195 (76.41%), Postives = 163/195 (83.59%), Query Frame = 0


Query: 51  RKPFVIQASVSISDPQVRTGPDDLVASILSKVTGSDRGVLLTEGKHKEVAELAQELQKYC 110
           R    I  +VSIS P +RTGPDDLVASILSKV  SD GV L + +HKEVAE+AQELQKYC
Sbjct: 44  RTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYC 103

Query: 111 VNEPVKCPLIFGDWDVVYCSVPTSPGGGYRSAVGRIFFKTKEMIQGVEAPDTIRNKVSFS 170
           V  PVKCPLIFG+WDVVYCSVPTSPGGGYRSA GR+FFKTKEMIQ VEAPDT+RNKVSF+
Sbjct: 104 VEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFT 163

Query: 171 ALGFLDGQVSL------------TVVFEPPELKVGGLEFRYGGESEVQLQITYIDDKIRL 230
           ALGFLDG+VSL             VVFEPPELKVGGLEFRYGG+SEV+LQITYID+KIRL
Sbjct: 164 ALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRL 223

Query: 231 GKGSRGSLFVFQRRS 234
           G GSRGSLFVFQRR+
Sbjct: 224 GLGSRGSLFVFQRRT 238

The following BLAST results are available for this feature:

BLAST of Carg08322-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929601.1	1.1e-120	94.26	probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita moschata]	[more]
XP_022997459.1	6.7e-118	92.62	probable plastid-lipid-associated protein 8, chloroplastic [Cucurbita maxima]	[more]
XP_008445102.1	5.0e-105	84.02	PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis m...	[more]
XP_004138759.1	1.5e-104	82.79	PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Cucumis s...	[more]
XP_022132330.1	2.3e-102	81.56	probable plastid-lipid-associated protein 8, chloroplastic [Momordica charantia]	[more]

BLAST of Carg08322-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19940.1	9.8e-71	63.64	Plastid-lipid associated protein PAP / fibrillin family protein	[more]
AT3G26070.1	8.5e-06	21.21	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

BLAST of Carg08322-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q941D3\|PAP8_ARATH	1.8e-69	63.64	Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of Carg08322-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBV9\|A0A1S3BBV9_CUCME	3.3e-105	84.02	probable plastid-lipid-associated protein 8, chloroplastic OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0LM49\|A0A0A0LM49_CUCSA	9.6e-105	82.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379140 PE=4 SV=1	[more]
tr\|A0A2P5G198\|A0A2P5G198_9ROSA	5.9e-78	65.70	Plastid lipid-associated protein/fibrillin conserved domain containing protein O...	[more]
tr\|M5Y016\|M5Y016_PRUPE	1.0e-77	65.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G462100 PE=4 SV=1	[more]
tr\|V4ULX1\|V4ULX1_9ROSI	2.2e-77	76.41	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009324mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006843	PAP/fibrillin_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08322	Carg08322	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08322-RA	Carg08322-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08322-RA.exon.1	Carg08322-RA.exon.1	exon
Carg08322-RA.exon.2	Carg08322-RA.exon.2	exon
Carg08322-RA.exon.3	Carg08322-RA.exon.3	exon
Carg08322-RA.exon.4	Carg08322-RA.exon.4	exon
Carg08322-RA.exon.5	Carg08322-RA.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08322-RA.five_prime_UTR.1	Carg08322-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08322-RA.CDS.1	Carg08322-RA.CDS.1	CDS
Carg08322-RA.CDS.2	Carg08322-RA.CDS.2	CDS
Carg08322-RA.CDS.3	Carg08322-RA.CDS.3	CDS
Carg08322-RA.CDS.4	Carg08322-RA.CDS.4	CDS
Carg08322-RA.CDS.5	Carg08322-RA.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 202..229 e-value: 4.3E-5 score: 23.4 coord: 76..188 e-value: 5.4E-6 score: 26.4
None	No IPR available	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 25..232
None	No IPR available	PANTHER	PTHR31906:SF12	SUBFAMILY NOT NAMED	coord: 25..232