Carg07879 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07879
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-type E3 ubiquitin transferase
Location	Cucurbita_argyrosperma_scaffold_066 : 574258 .. 576289 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTAATTTGGGAGCTGAAACGATGCTGACTTGCCGACGGTCCCACCGAGGGAATCCATACCCCACAAGAGAGCTGTCTAAGCCAAAGACGAAAGCAGGCGCCACGGAGCTGTGACCGTTGTCACATCAAACCCTCGACCCTGCACAAATGGATGGCCGAGATGAGTTTGATCAGATAAGCCGGGCCCCAAGTTTCAGTTATTAAAATGGGCTGTGACGATTAGAACCATACAAGGCCTTGTAGCTCTATCGAAACCCAGATGCCAAAGCTGGAGTAAAGGCGCTCAACGACGACAACAACAACACACACAGAAAGCAAAAATACCTGTTCCGTTCCGCCATCAGATTCCTTTCTCTCTCTCTACTTTTCCGGCCATGAAATTTTCCTGAGAAACAGACTGGAATTTTCGCTGTAAGTTGAATTTTGGGGGTTTTTGAACAGAGATTTTTCTTTCCGCTTTTGGAAATGGTGTCGATTGAGGATTCTCATTCGAGTTCTAATCGGTTTCCCTTGGGGAGGAATTGTTACAGTCCGTCTTCTACAACTTCCAGTAAAATTAGTAGGAACATTGGCCGTTCTATGCGAACTATTCGTTCCAATTTCTTTCAAGATGATAATAGTTGTACGTTTAATGGGTCGGTGGCCGGGAAATCAGGCTGCATCTCTGAGAATCTCACTGATTCTGTCATCGACATCAGGCTTGGCGAGTTGGCATCGCGCAGCCCGAAGTGGGCTAGCCAATCGTCTGAACAGGAAGAGGATTTTCTCGAACTTTCTCATGCTTTCAGTGATTTCTCTGCTTGTAGCAGTGATATTTCGGGTGAGTTGCAGAGACTTGCGAGCCTACCGTCCATGGCGGTTGTTTCTAAAAGAGAAGGTGGAGATGCTGAGACCGAGCCTGAGCCATGCTTAGGGTTTCTGCAGAGGGAGAATTTCTCCACTGAGATTATTGAGAGTATTTCGCCCGAAGATCTGCAGCCGACTGTCAAGATCTGCATCGATGGGCTTCAGTCATCATCAGTTGCTGTGAAGCGATCTGCGGCGGCTAAGCTGAGGCTTCTGGCGAAGAACCGGTCCGATAATCGGGTACTCATTGGGGAGTCCGGCGCCGTTCCTGCTTTAATTCCTCTACTTCGATCTACCGATCCATGGACACAAGAACACGCTGTAACCGCCCTGCTGAATCTCTCACTCCATGAGTCTAACAAGGTTATCATCACGAACGCTGGAGCCATTAAGTCACTGGTTTATGTGCTCAAAACCGGCACCGAAACTTCGAAACAGAATGCGGCATGTGCTCTGATGAGCCTCGCTCTGTTGGAGGAGAACAAAACTTCGATTGGGGTTTGCGGGGCCATCCCACCACTGGTATCTTTACTATTGAATGGATCGAATAGAGGGAAAAAGGACGCACTCACGACGCTCTACAAGCTTTGCTCAATCAAGCCGAACAAGGAGCGGACTGTTACCGCCGGAGCTGTGAAGCCATTGGTGGCGCTGGTAGCAGAGCAAGGGACGGGTTTGGCAGAGAAAGCGATGGTGGTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGGAAGGATGCTATTGTGGAAGAGGGTGGAATTGCTGCGCTTGTGGAAGCAATTGAAGATGGGTCAGTGAAAGGAAAAGAGTTCGCGGTATTAACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATAGAGGGTTGCTCGTAAGGGAAGGTGGAATTCCACCTCTGGTCGCACTTTCTCAGACTGGAAGCGTTCGAGCAAAGCACAAGGTGATTACCCTGAACCGATCAGTCAAGAGTCTCCAATCAATTCACGAACTCTTTAACTGATTCTATGAAATGAACAACTTGTTGATGAAATTTACTCACTTTTGCAGGCGGAAACGCTTCTGGGATACTTAAGAGAACCAAGACATGAAGCATCCTCATCAAGTCCTTAAAAACAGAAGGCCTTAGGTGGGTTTTTCTTAGAAGGTAATTGTATTATTAAGTAGTGGTTTCGTGGTTGCTGTATATAG

mRNA sequence

TTTGTAATTTGGGAGCTGAAACGATGCTGACTTGCCGACGGTCCCACCGAGGGAATCCATACCCCACAAGAGAGCTGTCTAAGCCAAAGACGAAAGCAGGCGCCACGGAGCTGTGACCGTTGTCACATCAAACCCTCGACCCTGCACAAATGGATGGCCGAGATGAGTTTGATCAGATAAGCCGGGCCCCAAGTTTCAGTTATTAAAATGGGCTGTGACGATTAGAACCATACAAGGCCTTGTAGCTCTATCGAAACCCAGATGCCAAAGCTGGAGTAAAGGCGCTCAACGACGACAACAACAACACACACAGAAAGCAAAAATACCTGTTCCGTTCCGCCATCAGATTCCTTTCTCTCTCTCTACTTTTCCGGCCATGAAATTTTCCTGAGAAACAGACTGGAATTTTCGCTGTAAGTTGAATTTTGGGGGTTTTTGAACAGAGATTTTTCTTTCCGCTTTTGGAAATGGTGTCGATTGAGGATTCTCATTCGAGTTCTAATCGGTTTCCCTTGGGGAGGAATTGTTACAGTCCGTCTTCTACAACTTCCAGTAAAATTAGTAGGAACATTGGCCGTTCTATGCGAACTATTCGTTCCAATTTCTTTCAAGATGATAATAGTTGTACGTTTAATGGGTCGGTGGCCGGGAAATCAGGCTGCATCTCTGAGAATCTCACTGATTCTGTCATCGACATCAGGCTTGGCGAGTTGGCATCGCGCAGCCCGAAGTGGGCTAGCCAATCGTCTGAACAGGAAGAGGATTTTCTCGAACTTTCTCATGCTTTCAGTGATTTCTCTGCTTGTAGCAGTGATATTTCGGGTGAGTTGCAGAGACTTGCGAGCCTACCGTCCATGGCGGTTGTTTCTAAAAGAGAAGGTGGAGATGCTGAGACCGAGCCTGAGCCATGCTTAGGGTTTCTGCAGAGGGAGAATTTCTCCACTGAGATTATTGAGAGTATTTCGCCCGAAGATCTGCAGCCGACTGTCAAGATCTGCATCGATGGGCTTCAGTCATCATCAGTTGCTGTGAAGCGATCTGCGGCGGCTAAGCTGAGGCTTCTGGCGAAGAACCGGTCCGATAATCGGGTACTCATTGGGGAGTCCGGCGCCGTTCCTGCTTTAATTCCTCTACTTCGATCTACCGATCCATGGACACAAGAACACGCTGTAACCGCCCTGCTGAATCTCTCACTCCATGAGTCTAACAAGGTTATCATCACGAACGCTGGAGCCATTAAGTCACTGGTTTATGTGCTCAAAACCGGCACCGAAACTTCGAAACAGAATGCGGCATGTGCTCTGATGAGCCTCGCTCTGTTGGAGGAGAACAAAACTTCGATTGGGGTTTGCGGGGCCATCCCACCACTGGTATCTTTACTATTGAATGGATCGAATAGAGGGAAAAAGGACGCACTCACGACGCTCTACAAGCTTTGCTCAATCAAGCCGAACAAGGAGCGGACTGTTACCGCCGGAGCTGTGAAGCCATTGGTGGCGCTGGTAGCAGAGCAAGGGACGGGTTTGGCAGAGAAAGCGATGGTGGTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGGAAGGATGCTATTGTGGAAGAGGGTGGAATTGCTGCGCTTGTGGAAGCAATTGAAGATGGGTCAGTGAAAGGAAAAGAGTTCGCGGTATTAACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATAGAGGGTTGCTCGTAAGGGAAGGTGGAATTCCACCTCTGGTCGCACTTTCTCAGACTGGAAGCGTTCGAGCAAAGCACAAGGCGGAAACGCTTCTGGGATACTTAAGAGAACCAAGACATGAAGCATCCTCATCAAGTCCTTAAAAACAGAAGGCCTTAGGTGGGTTTTTCTTAGAAGGTAATTGTATTATTAAGTAGTGGTTTCGTGGTTGCTGTATATAG

Coding sequence (CDS)

ATGGTGTCGATTGAGGATTCTCATTCGAGTTCTAATCGGTTTCCCTTGGGGAGGAATTGTTACAGTCCGTCTTCTACAACTTCCAGTAAAATTAGTAGGAACATTGGCCGTTCTATGCGAACTATTCGTTCCAATTTCTTTCAAGATGATAATAGTTGTACGTTTAATGGGTCGGTGGCCGGGAAATCAGGCTGCATCTCTGAGAATCTCACTGATTCTGTCATCGACATCAGGCTTGGCGAGTTGGCATCGCGCAGCCCGAAGTGGGCTAGCCAATCGTCTGAACAGGAAGAGGATTTTCTCGAACTTTCTCATGCTTTCAGTGATTTCTCTGCTTGTAGCAGTGATATTTCGGGTGAGTTGCAGAGACTTGCGAGCCTACCGTCCATGGCGGTTGTTTCTAAAAGAGAAGGTGGAGATGCTGAGACCGAGCCTGAGCCATGCTTAGGGTTTCTGCAGAGGGAGAATTTCTCCACTGAGATTATTGAGAGTATTTCGCCCGAAGATCTGCAGCCGACTGTCAAGATCTGCATCGATGGGCTTCAGTCATCATCAGTTGCTGTGAAGCGATCTGCGGCGGCTAAGCTGAGGCTTCTGGCGAAGAACCGGTCCGATAATCGGGTACTCATTGGGGAGTCCGGCGCCGTTCCTGCTTTAATTCCTCTACTTCGATCTACCGATCCATGGACACAAGAACACGCTGTAACCGCCCTGCTGAATCTCTCACTCCATGAGTCTAACAAGGTTATCATCACGAACGCTGGAGCCATTAAGTCACTGGTTTATGTGCTCAAAACCGGCACCGAAACTTCGAAACAGAATGCGGCATGTGCTCTGATGAGCCTCGCTCTGTTGGAGGAGAACAAAACTTCGATTGGGGTTTGCGGGGCCATCCCACCACTGGTATCTTTACTATTGAATGGATCGAATAGAGGGAAAAAGGACGCACTCACGACGCTCTACAAGCTTTGCTCAATCAAGCCGAACAAGGAGCGGACTGTTACCGCCGGAGCTGTGAAGCCATTGGTGGCGCTGGTAGCAGAGCAAGGGACGGGTTTGGCAGAGAAAGCGATGGTGGTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGGAAGGATGCTATTGTGGAAGAGGGTGGAATTGCTGCGCTTGTGGAAGCAATTGAAGATGGGTCAGTGAAAGGAAAAGAGTTCGCGGTATTAACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATAGAGGGTTGCTCGTAAGGGAAGGTGGAATTCCACCTCTGGTCGCACTTTCTCAGACTGGAAGCGTTCGAGCAAAGCACAAGGCGGAAACGCTTCTGGGATACTTAAGAGAACCAAGACATGAAGCATCCTCATCAAGTCCTTAA

Protein sequence

MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVAGKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGELQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLNLSLHESNKVIITNAGAIKSLVYVLKTGTETSKQNAACALMSLALLEENKTSIGVCGAIPPLVSLLLNGSNRGKKDALTTLYKLCSIKPNKERTVTAGAVKPLVALVAEQGTGLAEKAMVVLSSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVESVRNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRHEASSSSP

Homology

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BLAST of Carg07879 vs. NCBI nr
Match: XP_023003065.1 (U-box domain-containing protein 4-like [Cucurbita maxima])

HSP 1 Score: 466.1 bits (1198), Expect = 1.4e-127
Identity = 242/243 (99.59%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
           GKSGC+SENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE
Sbjct: 61  GKSGCVSENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

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BLAST of Carg07879 vs. NCBI nr
Match: XP_022926504.1 (U-box domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 2.4e-127
Identity = 242/243 (99.59%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVSIEDSHSSSNRFPLGRNCYSP+STTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSIEDSHSSSNRFPLGRNCYSPTSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
           GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE
Sbjct: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

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BLAST of Carg07879 vs. NCBI nr
Match: XP_023518630.1 (U-box domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 463.4 bits (1191), Expect = 9.1e-127
Identity = 240/243 (98.77%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
           G+SGC+SENLTDSVIDIRLGELASRSPKWA+QSSEQEEDFLELSHAFSDFSACSSDISGE
Sbjct: 61  GESGCVSENLTDSVIDIRLGELASRSPKWANQSSEQEEDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

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BLAST of Carg07879 vs. NCBI nr
Match: XP_004134799.1 (PREDICTED: U-box domain-containing protein 4 [Cucumis sativus] >KGN49052.1 hypothetical protein Csa_6G511670 [Cucumis sativus])

HSP 1 Score: 442.2 bits (1136), Expect = 2.2e-120
Identity = 227/243 (93.42%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVS+EDSHS+SNRFPL RNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSLEDSHSTSNRFPLTRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
            KSGC+SENLTDSVID+RLGELASRSPKW+ QSSEQE+DFLELSHAFSDFSACSSDISGE
Sbjct: 61  AKSGCVSENLTDSVIDLRLGELASRSPKWSKQSSEQEQDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLASLPSMAVV +REG D + EPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLASLPSMAVVPQREGEDGDPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSS+AVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSIAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

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BLAST of Carg07879 vs. NCBI nr
Match: XP_022949882.1 (U-box domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 440.3 bits (1131), Expect = 8.2e-120
Identity = 228/243 (93.83%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVS+EDSHS+SNRFPLGRNCYSPSSTTSS+ISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSLEDSHSTSNRFPLGRNCYSPSSTTSSRISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
           GKSG +SENLTDSVID+RLGELASRSPKWA+QSSEQE+DFLELSHAFSDFSACSSDISGE
Sbjct: 61  GKSGFVSENLTDSVIDLRLGELASRSPKWANQSSEQEQDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLA+LPSMAVV KREG  AE EPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLANLPSMAVVPKREGEVAEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSS+AVKRSAAAKLRLLAKNRSDNRVLIGESGAV ALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSIAVKRSAAAKLRLLAKNRSDNRVLIGESGAVSALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

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BLAST of Carg07879 vs. TAIR10
Match: AT4G16490.1 (ARM repeat superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 6.1e-69
Identity = 153/254 (60.24%), Postives = 176/254 (69.29%), Query Frame = 0


Query: 1   MVSIED--SHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQD-DNSCTFNG 60
           MVS+E+  SHS+S RFPL  + Y  SS +++++ R  GRSMRT+RSNF+Q  D SC+F G
Sbjct: 1   MVSVEEPLSHSNSTRFPLTTDFYGSSSPSAARLHRQAGRSMRTVRSNFYQSGDQSCSFVG 60

Query: 61  SVAGKSGCISENLTDSVIDIRLGELASRSPKWASQ--SSEQEEDFLELSHAFSDFSACSS 120
           S+  KS   SE L+DSVID+RLGELA ++    +                          
Sbjct: 61  SIGDKSEYASEFLSDSVIDMRLGELALKNSNSLNSXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 DISGELQRLASLPSMAVVSKREGG------DAETEPEPCLGFLQRENFSTEIIESISPED 180
              GELQRLA LPS        GG      D E E EPCLGFLQRENFSTEIIE ISPED
Sbjct: 121 XXXGELQRLACLPSPEADRNESGGDNEAEHDPELEREPCLGFLQRENFSTEIIECISPED 180

Query: 181 LQPTVKICIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPW 240
           LQPTVK+CIDGL+SSSVA+KRSAAAKLRLLAKNR+DNRVLIGESGA+ ALIPLLR  DPW
Sbjct: 181 LQPTVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGESGAIQALIPLLRCNDPW 240

Query: 241 TQEHAVTALLNLSL 244
           TQEHAVTALLNLSL
Sbjct: 241 TQEHAVTALLNLSL 254

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BLAST of Carg07879 vs. TAIR10
Match: AT2G23140.1 (RING/U-box superfamily protein with ARM repeat domain)

HSP 1 Score: 79.3 bits (194), Expect = 6.7e-15
Identity = 66/172 (38.37%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 85  RSPKWASQSSEQE---EDFLELSHAFSDFSACSSDISGELQR--LASLPSMAV------- 144
           RSP   S  S +E    D  E S   +  +  SSD SGE++   LA+  S A        
Sbjct: 443 RSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDF 502

Query: 145 ----VSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAV 204
               + +R  G     P   LG       S E    +S  +++  VK  ++ L+SSS+  
Sbjct: 503 SPKFMDRRTRGQFWRRPSERLGSRIVSAPSNETRRDLS--EVETQVKKLVEELKSSSLDT 562

Query: 205 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 241
           +R A A+LRLLAK+  DNR++IG SGA+  L+ LL STD  TQE+AVTALLN
Sbjct: 563 QRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLN 612

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BLAST of Carg07879 vs. TAIR10
Match: AT3G54850.1 (plant U-box 14)

HSP 1 Score: 73.6 bits (179), Expect = 3.7e-13
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 158 STEIIESISPEDLQPTVKICIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVP 217
           +T+I  S S +  +  V   ++ L + +   +R+AA +LRLLAK   DNRV I E+GA+P
Sbjct: 331 TTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIP 390

Query: 218 ALIPLLRSTDPWTQEHAVTALLNLS 243
            L+ LL S DP TQEH+VTALLNLS
Sbjct: 391 LLVELLSSPDPRTQEHSVTALLNLS 415

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BLAST of Carg07879 vs. TAIR10
Match: AT3G46510.1 (plant U-box 13)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 189 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLNLSL 244
           +RSAA ++RLLAK  +DNRV I E+GA+P L+ LL + D   QEH+VTALLNLS+
Sbjct: 369 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSI 423

[Close]

BLAST of Carg07879 vs. TAIR10
Match: AT1G23030.1 (ARM repeat superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-10
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 174 VKICIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEH 233
           ++  +  L S S   +R+A +++R L+K  +DNR+LI E+GA+P L+ LL S D  TQE+
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392

Query: 234 AVTALLNLSL 244
           A+T +LNLS+
Sbjct: 393 AITCVLNLSI 402

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BLAST of Carg07879 vs. Swiss-Prot
Match: sp|O22193|PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-13
Identity = 66/172 (38.37%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 85  RSPKWASQSSEQE---EDFLELSHAFSDFSACSSDISGELQR--LASLPSMAV------- 144
           RSP   S  S +E    D  E S   +  +  SSD SGE++   LA+  S A        
Sbjct: 440 RSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDF 499

Query: 145 ----VSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAV 204
               + +R  G     P   LG       S E    +S  +++  VK  ++ L+SSS+  
Sbjct: 500 SPKFMDRRTRGQFWRRPSERLGSRIVSAPSNETRRDLS--EVETQVKKLVEELKSSSLDT 559

Query: 205 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 241
           +R A A+LRLLAK+  DNR++IG SGA+  L+ LL STD  TQE+AVTALLN
Sbjct: 560 QRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLN 609

[Close]

BLAST of Carg07879 vs. Swiss-Prot
Match: sp|Q8VZ40|PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-12
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 158 STEIIESISPEDLQPTVKICIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVP 217
           +T+I  S S +  +  V   ++ L + +   +R+AA +LRLLAK   DNRV I E+GA+P
Sbjct: 331 TTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIP 390

Query: 218 ALIPLLRSTDPWTQEHAVTALLNLS 243
            L+ LL S DP TQEH+VTALLNLS
Sbjct: 391 LLVELLSSPDPRTQEHSVTALLNLS 415

[Close]

BLAST of Carg07879 vs. Swiss-Prot
Match: sp|A2ZLU6|SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-10
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           L S     +RSAAA+LRLLAK  ++NR+ I E+GA+P L+ LL S+D  TQEHAVTALLN
Sbjct: 376 LCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLN 435

[Close]

BLAST of Carg07879 vs. Swiss-Prot
Match: sp|Q0IMG9|SL11_ORYSJ (E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL11 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-10
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           L S     +RSAAA+LRLLAK  ++NR+ I E+GA+P L+ LL S+D  TQEHAVTALLN
Sbjct: 376 LCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLN 435

[Close]

BLAST of Carg07879 vs. Swiss-Prot
Match: sp|Q9SNC6|PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-10
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 189 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLNLSL 244
           +RSAA ++RLLAK  +DNRV I E+GA+P L+ LL + D   QEH+VTALLNLS+
Sbjct: 369 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSI 423

[Close]

BLAST of Carg07879 vs. TrEMBL
Match: tr|A0A0A0KL34|A0A0A0KL34_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511670 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.4e-120
Identity = 227/243 (93.42%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVS+EDSHS+SNRFPL RNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSLEDSHSTSNRFPLTRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
            KSGC+SENLTDSVID+RLGELASRSPKW+ QSSEQE+DFLELSHAFSDFSACSSDISGE
Sbjct: 61  AKSGCVSENLTDSVIDLRLGELASRSPKWSKQSSEQEQDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLASLPSMAVV +REG D + EPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLASLPSMAVVPQREGEDGDPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSS+AVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSIAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

[Close]

BLAST of Carg07879 vs. TrEMBL
Match: tr|A0A1S3B089|A0A1S3B089_CUCME (U-box domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103484662 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.6e-119
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60
           MVS+EDSHS+SNRFPL RNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA
Sbjct: 1   MVSLEDSHSTSNRFPLTRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGSVA 60

Query: 61  GKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISGE 120
            KS C+SENLTDSVID+RLGELASRSPKW+ QSSEQE+DFLELSHAFSDFSACSSDISGE
Sbjct: 61  AKSVCVSENLTDSVIDLRLGELASRSPKWSKQSSEQEQDFLELSHAFSDFSACSSDISGE 120

Query: 121 LQRLASLPSMAVVSKREGGDAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180
           LQRLASLPSMAVV +REG D + EPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG
Sbjct: 121 LQRLASLPSMAVVPQREGEDGDPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDG 180

Query: 181 LQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240
           LQSSS+AVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN
Sbjct: 181 LQSSSIAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVTALLN 240

Query: 241 LSL 244
           LSL
Sbjct: 241 LSL 243

[Close]

BLAST of Carg07879 vs. TrEMBL
Match: tr|A0A199UB46|A0A199UB46_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S065800 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 4.1e-91
Identity = 187/250 (74.80%), Postives = 210/250 (84.00%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNC--YSPSSTTSSKISRNIGRSMRTIRSNFFQDDNSCTFNGS 60
           MVS+EDSHSSSNRFPL RN   Y+PSS +++KISR++GRSMRTIRSN +Q+DNSC    +
Sbjct: 1   MVSLEDSHSSSNRFPLTRNSNFYNPSSASTTKISRHVGRSMRTIRSNLYQNDNSCCSFTT 60

Query: 61  VAGKSGCISENLTDSVIDIRLGELASR----SPKWASQSSEQEEDFLELSHAFSDFSACS 120
               S  +SENLT+SVID+RLGEL SR    + K    SS  +E+FL++SHAFSDFSACS
Sbjct: 61  ATDNSAYVSENLTESVIDMRLGELVSRNNDSNDKSGKTSSNSDEEFLDISHAFSDFSACS 120

Query: 121 SDISGELQRLASLPSMAVVSKREGGD-AETEPEPCLGFLQRENFSTEIIESISPEDLQPT 180
           SDISGELQRLASLPS     K +G + AE EPEPCLGFLQRENFSTEIIESISPEDLQPT
Sbjct: 121 SDISGELQRLASLPSPEHTPKHDGCESAEPEPEPCLGFLQRENFSTEIIESISPEDLQPT 180

Query: 181 VKICIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEH 240
           VKIC+DGLQS SVAVKRSAAAKLRLLAKNRSDNR LIGESGA+PALIPLLR +DPWTQEH
Sbjct: 181 VKICVDGLQSPSVAVKRSAAAKLRLLAKNRSDNRALIGESGAIPALIPLLRCSDPWTQEH 240

Query: 241 AVTALLNLSL 244
           AVTALLNLSL
Sbjct: 241 AVTALLNLSL 250

[Close]

BLAST of Carg07879 vs. TrEMBL
Match: tr|A0A1U8JYF5|A0A1U8JYF5_GOSHI (U-box domain-containing protein 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107910088 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.0e-91
Identity = 184/247 (74.49%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDN-SCTFNGSV 60
           MVS+EDSHS+SNRFPLGRN Y+PSS +++KI R++GRSMRTIRSN +Q+DN SC+F  SV
Sbjct: 1   MVSLEDSHSNSNRFPLGRNFYTPSSASTTKIHRHVGRSMRTIRSNLYQNDNSSCSFTSSV 60

Query: 61  AGKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISG 120
             +S  +SENLT+SVID+RLGELA++S   +  S  + E FLE+S AFSDFSACSSDISG
Sbjct: 61  PERSAFVSENLTESVIDMRLGELAAKSNAKSVTSESENEAFLEISQAFSDFSACSSDISG 120

Query: 121 ELQRLASLPS--MAVVSKREGG-DAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKI 180
           ELQRLASLPS   +++++R  G  +E EPEPC GFLQRENFSTEIIESISPEDLQPTVKI
Sbjct: 121 ELQRLASLPSPENSLMNERNNGVQSEPEPEPCHGFLQRENFSTEIIESISPEDLQPTVKI 180

Query: 181 CIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVT 240
           CIDGL+S SVAVKRSAAAKLRLLAKNR DNR LIGESGA+PALIPLLR++DPWTQEHAVT
Sbjct: 181 CIDGLESPSVAVKRSAAAKLRLLAKNRVDNRALIGESGAIPALIPLLRNSDPWTQEHAVT 240

Query: 241 ALLNLSL 244
           ALLNLSL
Sbjct: 241 ALLNLSL 247

[Close]

BLAST of Carg07879 vs. TrEMBL
Match: tr|A0A2P5SIQ4|A0A2P5SIQ4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04060 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.0e-91
Identity = 184/247 (74.49%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MVSIEDSHSSSNRFPLGRNCYSPSSTTSSKISRNIGRSMRTIRSNFFQDDN-SCTFNGSV 60
           MVS+EDSHS+SNRFPLGRN Y+PSS +++KI R++GRSMRTIRSN +Q+DN SC+F  SV
Sbjct: 1   MVSLEDSHSNSNRFPLGRNFYTPSSASTTKIHRHVGRSMRTIRSNLYQNDNSSCSFTSSV 60

Query: 61  AGKSGCISENLTDSVIDIRLGELASRSPKWASQSSEQEEDFLELSHAFSDFSACSSDISG 120
             +S  +SENLT+SVID+RLGELA++S   +  S  + E FLE+S AFSDFSACSSDISG
Sbjct: 61  PERSAFVSENLTESVIDMRLGELAAKSNAKSVTSESENEAFLEISQAFSDFSACSSDISG 120

Query: 121 ELQRLASLPS--MAVVSKREGG-DAETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKI 180
           ELQRLASLPS   +++++R  G  +E EPEPC GFLQRENFSTEIIESISPEDLQPTVKI
Sbjct: 121 ELQRLASLPSPENSLMNERNNGVQSEPEPEPCHGFLQRENFSTEIIESISPEDLQPTVKI 180

Query: 181 CIDGLQSSSVAVKRSAAAKLRLLAKNRSDNRVLIGESGAVPALIPLLRSTDPWTQEHAVT 240
           CIDGL+S SVAVKRSAAAKLRLLAKNR DNR LIGESGA+PALIPLLR++DPWTQEHAVT
Sbjct: 181 CIDGLESPSVAVKRSAAAKLRLLAKNRVDNRALIGESGAIPALIPLLRNSDPWTQEHAVT 240

Query: 241 ALLNLSL 244
           ALLNLSL
Sbjct: 241 ALLNLSL 247

The following BLAST results are available for this feature:

BLAST of Carg07879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003065.1	1.4e-127	99.59	U-box domain-containing protein 4-like [Cucurbita maxima]	[more]
XP_022926504.1	2.4e-127	99.59	U-box domain-containing protein 4-like [Cucurbita moschata]	[more]
XP_023518630.1	9.1e-127	98.77	U-box domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_004134799.1	2.2e-120	93.42	PREDICTED: U-box domain-containing protein 4 [Cucumis sativus] >KGN49052.1 hypot...	[more]
XP_022949882.1	8.2e-120	93.83	U-box domain-containing protein 4-like [Cucurbita moschata]	[more]

BLAST of Carg07879 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16490.1	6.1e-69	60.24	ARM repeat superfamily protein	[more]
AT2G23140.1	6.7e-15	38.37	RING/U-box superfamily protein with ARM repeat domain	[more]
AT3G54850.1	3.7e-13	49.41	plant U-box 14	[more]
AT3G46510.1	3.4e-11	60.00	plant U-box 13	[more]
AT1G23030.1	1.0e-10	44.29	ARM repeat superfamily protein	[more]

BLAST of Carg07879 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22193\|PUB4_ARATH	1.2e-13	38.37	U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 S...	[more]
sp\|Q8VZ40\|PUB14_ARATH	6.6e-12	49.41	U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1...	[more]
sp\|A2ZLU6\|SL11_ORYSI	3.6e-10	60.00	Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=...	[more]
sp\|Q0IMG9\|SL11_ORYSJ	3.6e-10	60.00	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SP...	[more]
sp\|Q9SNC6\|PUB13_ARATH	6.2e-10	60.00	U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1...	[more]

BLAST of Carg07879 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KL34\|A0A0A0KL34_CUCSA	1.4e-120	93.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511670 PE=4 SV=1	[more]
tr\|A0A1S3B089\|A0A1S3B089_CUCME	1.6e-119	93.00	U-box domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103484662 PE=4 S...	[more]
tr\|A0A199UB46\|A0A199UB46_MANES	4.1e-91	74.80	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S065800 PE=4 SV=1	[more]
tr\|A0A1U8JYF5\|A0A1U8JYF5_GOSHI	9.0e-91	74.49	U-box domain-containing protein 4-like OS=Gossypium hirsutum OX=3635 GN=LOC10791...	[more]
tr\|A0A2P5SIQ4\|A0A2P5SIQ4_GOSBA	9.0e-91	74.49	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04060 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR011989	ARM-like
IPR000225	Armadillo

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07879-RA	Carg07879-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000225	Armadillo	SMART	SM00185	arm_5	coord: 409..449 e-value: 19.0 score: 11.1 coord: 244..284 e-value: 30.0 score: 9.5 coord: 203..243 e-value: 0.0014 score: 27.9 coord: 326..366 e-value: 290.0 score: 1.9 coord: 367..407 e-value: 8.1 score: 13.9 coord: 285..325 e-value: 0.83 score: 18.7
IPR000225	Armadillo	PFAM	PF00514	Arm	coord: 204..242 e-value: 3.1E-8 score: 33.3 coord: 287..325 e-value: 7.8E-6 score: 25.7
IPR000225	Armadillo	PROSITE	PS50176	ARM_REPEAT	coord: 214..256 score: 12.547
IPR000225	Armadillo	PROSITE	PS50176	ARM_REPEAT	coord: 337..379 score: 9.957
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 329..456 e-value: 1.1E-18 score: 69.3
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 171..328 e-value: 7.1E-32 score: 112.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR23315:SF129	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 1..459
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 1..459
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 170..447

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07879	Cla014400	Watermelon (97103) v1	carwmB0642
Carg07879	Csa6G511670	Cucumber (Chinese Long) v2	carcuB0663
Carg07879	MELO3C007441	Melon (DHL92) v3.5.1	carmeB0642
Carg07879	ClCG01G021420	Watermelon (Charleston Gray)	carwcgB0623
Carg07879	CSPI06G32980	Wild cucumber (PI 183967)	carcpiB0672
Carg07879	Cucsa.044730	Cucumber (Gy14) v1	carcgyB0714
Carg07879	CmaCh07G003500	Cucurbita maxima (Rimu)	carcmaB0914
Carg07879	CmaCh03G005770	Cucurbita maxima (Rimu)	carcmaB0912
Carg07879	CmoCh07G003410	Cucurbita moschata (Rifu)	carcmoB0888
Carg07879	CmoCh03G006050	Cucurbita moschata (Rifu)	carcmoB0886
Carg07879	Lsi01G004830	Bottle gourd (USVL1VR-Ls)	carlsiB585
Carg07879	Cp4.1LG10g09890	Cucurbita pepo (Zucchini)	carcpeB0913
Carg07879	Cp4.1LG19g07990	Cucurbita pepo (Zucchini)	carcpeB0915
Carg07879	CsGy6G032560	Cucumber (Gy14) v2	carcgybB0640
Carg07879	MELO3C007441.2	Melon (DHL92) v3.6.1	carmedB0652
Carg07879	CsaV3_6G048440	Cucumber (Chinese Long) v3	carcucB0674
Carg07879	Cla97C01G020990	Watermelon (97103) v2	carwmbB0669
Carg07879	Bhi03G000501	Wax gourd	carwgoB0759

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07879	Carg00500	Silver-seed gourd	carcarB425

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07879	Cucurbita maxima (Rimu)	carcmaB0907