Carg07271 (gene) Silver-seed gourd

Overview
NameCarg07271
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmethylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2
LocationCucurbita_argyrosperma_scaffold_017 : 1023583 .. 1024068 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGTTTTCACTGGCACTCGATCTTCTCTCCAATCGATGTGAGATCTCACATAAACTTTTTATTAAAACTTGCAAATCATTACGCATTTGAACGAGGGGACGTGGAAACTCATTTTATTGAGCGCTACAAAGATGACCTCTTTGTCGATCCTTCTAATCTTTTGATGGCAAAAGAAGGATATGAAGCTGCTGGACTTAATGCCCGTCTAGCTGCTGCTTGTATCGTCAGCTTGGAACATTCTAAACTCACTGAAAATTCTTCTGGTATTGCAAGCTCTTATCTATTTCTATGACCTTAATTGTTTTAGAAAGCAGTTCTTAAATTGAAAATTCTATATCTTATCAGGGAATGATTTATATTCAGTATAGAGTCCTCGTTGGGCTAGGCGCACAATGGAGTTTGAGTGGGAGAATCAATATGATAGCAGTGTCTCCAAGCCGTTTGCACTTACAAAATCACCTACCAGCAAGATGGGGCCTTTTTAA

mRNA sequence

AGCGTTTTCACTGGCACTCGATCTTCTCTCCAATCGATGTGAGATCTCACATAAACTTTTTATTAAAACTTGCAAATCATTACGCATTTGAACGAGGGGACGTGGAAACTCATTTTATTGAGCGCTACAAAGATGACCTCTTTGTCGATCCTTCTAATCTTTTGATGGCAAAAGAAGGATATGAAGCTGCTGGACTTAATGCCCGTCTAGCTGCTGCTTGTATCGTCAGCTTGGAACATTCTAAACTCACTGAAAATTCTTCTGGGAATGATTTATATTCAAGTCCTCGTTGGGCTAGGCGCACAATGGAGTTTGAGTGGGAGAATCAATATGATAGCAGTGTCTCCAAGCCGTTTGCACTTACAAAATCACCTACCAGCAAGATGGGGCCTTTTTAA

Coding sequence (CDS)

ATGGCAAAAGAAGGATATGAAGCTGCTGGACTTAATGCCCGTCTAGCTGCTGCTTGTATCGTCAGCTTGGAACATTCTAAACTCACTGAAAATTCTTCTGGGAATGATTTATATTCAAGTCCTCGTTGGGCTAGGCGCACAATGGAGTTTGAGTGGGAGAATCAATATGATAGCAGTGTCTCCAAGCCGTTTGCACTTACAAAATCACCTACCAGCAAGATGGGGCCTTTTTAA

Protein sequence

MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDLYSSPRWARRTMEFEWENQYDSSVSKPFALTKSPTSKMGPF
Homology
[Close]
BLAST of Carg07271 vs. NCBI nr
Match: XP_022150199.1 (methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-17
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YE A LNARLAAACI+ LEHSKL + SSGN +    YS P +     ARRTMEFE
Sbjct: 493 MAKEAYETARLNARLAAACILHLEHSKLNKKSSGNGIHSIWYSPPPFRVHHSARRTMEFE 552

Query: 61  WENQYDSSVSKPFAL 67
           WENQYDSSVSKPFAL
Sbjct: 553 WENQYDSSVSKPFAL 567

[Close]
BLAST of Carg07271 vs. NCBI nr
Match: XP_022150197.1 (methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-17
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YE A LNARLAAACI+ LEHSKL + SSGN +    YS P +     ARRTMEFE
Sbjct: 494 MAKEAYETARLNARLAAACILHLEHSKLNKKSSGNGIHSIWYSPPPFRVHHSARRTMEFE 553

Query: 61  WENQYDSSVSKPFAL 67
           WENQYDSSVSKPFAL
Sbjct: 554 WENQYDSSVSKPFAL 568

[Close]
BLAST of Carg07271 vs. NCBI nr
Match: XP_004146969.1 (PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1 [Cucumis sativus] >KGN44783.1 hypothetical protein Csa_7G387180 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 54/76 (71.05%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YEAAG NA LAAACIVSLEHSKL EN SGNDL    YS P +     AR T+EF 
Sbjct: 493 MAKEAYEAAGFNASLAAACIVSLEHSKLAENFSGNDLHSIWYSPPPFRVHHCARCTVEFA 552

Query: 61  WENQYDSSVSKPFALT 68
           WENQYDSS SKPF LT
Sbjct: 553 WENQYDSSGSKPFPLT 568

[Close]
BLAST of Carg07271 vs. NCBI nr
Match: XP_011659277.1 (PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 54/76 (71.05%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YEAAG NA LAAACIVSLEHSKL EN SGNDL    YS P +     AR T+EF 
Sbjct: 478 MAKEAYEAAGFNASLAAACIVSLEHSKLAENFSGNDLHSIWYSPPPFRVHHCARCTVEFA 537

Query: 61  WENQYDSSVSKPFALT 68
           WENQYDSS SKPF LT
Sbjct: 538 WENQYDSSGSKPFPLT 553

[Close]
BLAST of Carg07271 vs. NCBI nr
Match: XP_023513665.1 (methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 3.2e-16
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE Y+AAGLNARLAAAC+VSLE SKL E SSG  +    YS P +     ARRT+E+E
Sbjct: 492 MAKEAYDAAGLNARLAAACLVSLELSKLNEKSSGKGIHSIWYSPPPFRVHHCARRTIEYE 551

Query: 61  WENQYDSSVSKPFALT 68
           WEN YDSSVSKPFALT
Sbjct: 552 WENPYDSSVSKPFALT 567

[Close]
BLAST of Carg07271 vs. Swiss-Prot
Match: sp|Q42777|MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=MCCA PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 35/75 (46.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 3   KEGYEAAGLNARLAAACIVSLEHSKLTENSSGND-----LYSSPRW-----ARRTMEFEW 62
           KE YEAA LNA L AAC++  EH  L  N  G        YSSP +     A+R ME EW
Sbjct: 491 KEAYEAARLNASLVAACLIEKEHFILARNPPGGSSLLPIWYSSPPFRIHHQAKRRMELEW 550

Query: 63  ENQYDSSVSKPFALT 68
           +N+Y S  SK   LT
Sbjct: 551 DNEYGSGSSKIMKLT 565

[Close]
BLAST of Carg07271 vs. TrEMBL
Match: tr|A0A0A0K5L0|A0A0A0K5L0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387180 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.2e-17
Identity = 54/76 (71.05%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YEAAG NA LAAACIVSLEHSKL EN SGNDL    YS P +     AR T+EF 
Sbjct: 493 MAKEAYEAAGFNASLAAACIVSLEHSKLAENFSGNDLHSIWYSPPPFRVHHCARCTVEFA 552

Query: 61  WENQYDSSVSKPFALT 68
           WENQYDSS SKPF LT
Sbjct: 553 WENQYDSSGSKPFPLT 568

[Close]
BLAST of Carg07271 vs. TrEMBL
Match: tr|A0A1S3BR54|A0A1S3BR54_CUCME (methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492640 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 52/76 (68.42%), Postives = 55/76 (72.37%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YEA G NA LAA+CIVSLEHSKL EN SGNDL    YS P +     ARRT+EF 
Sbjct: 357 MAKEAYEAGGFNACLAASCIVSLEHSKLAENFSGNDLHSIWYSPPPFRVHHCARRTVEFA 416

Query: 61  WENQYDSSVSKPFALT 68
            ENQYDSS SKPF LT
Sbjct: 417 LENQYDSSASKPFPLT 432

[Close]
BLAST of Carg07271 vs. TrEMBL
Match: tr|A0A1S3BR80|A0A1S3BR80_CUCME (methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492640 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 52/76 (68.42%), Postives = 55/76 (72.37%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YEA G NA LAA+CIVSLEHSKL EN SGNDL    YS P +     ARRT+EF 
Sbjct: 477 MAKEAYEAGGFNACLAASCIVSLEHSKLAENFSGNDLHSIWYSPPPFRVHHCARRTVEFA 536

Query: 61  WENQYDSSVSKPFALT 68
            ENQYDSS SKPF LT
Sbjct: 537 LENQYDSSASKPFPLT 552

[Close]
BLAST of Carg07271 vs. TrEMBL
Match: tr|A0A1S3BQJ9|A0A1S3BQJ9_CUCME (methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492640 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 52/76 (68.42%), Postives = 55/76 (72.37%), Query Frame = 0 

Query: 1   MAKEGYEAAGLNARLAAACIVSLEHSKLTENSSGNDL----YSSPRW-----ARRTMEFE 60
           MAKE YEA G NA LAA+CIVSLEHSKL EN SGNDL    YS P +     ARRT+EF 
Sbjct: 492 MAKEAYEAGGFNACLAASCIVSLEHSKLAENFSGNDLHSIWYSPPPFRVHHCARRTVEFA 551

Query: 61  WENQYDSSVSKPFALT 68
            ENQYDSS SKPF LT
Sbjct: 552 LENQYDSSASKPFPLT 567

[Close]
BLAST of Carg07271 vs. TrEMBL
Match: tr|A0A2P4KE92|A0A2P4KE92_QUESU (Methylcrotonoyl-coa carboxylase subunit alpha, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_44514 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.4e-09
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 2   AKEGYEAAGLNARLAAACIVSLEHSKLTENSSGND----LYSSPRW-----ARRTMEFEW 61
           AK+ +EAA  NA L AAC++S+EHS   ENS GN+     YSSP +     AR TME EW
Sbjct: 504 AKDAHEAARFNATLVAACVISMEHSLSKENSPGNNSLSIWYSSPPFRVHHCARHTMEIEW 563

Query: 62  ENQYDSSVSKPFALT 68
           EN+YDS+ S    L+
Sbjct: 564 ENEYDSAGSNVLTLS 578

The following BLAST results are available for this feature:
BLAST of Carg07271 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150199.16.4e-1770.67methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2 [Momordi... [more]
XP_022150197.16.4e-1770.67methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1 [Momordi... [more]
XP_004146969.11.1e-1671.05PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform ... [more]
XP_011659277.11.1e-1671.05PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform ... [more]
XP_023513665.13.2e-1668.42methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Cucurbita pepo sub... [more]
BLAST of Carg07271 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg07271 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q42777|MCCA_SOYBN3.7e-0846.67Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max OX=3... [more]
BLAST of Carg07271 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5L0|A0A0A0K5L0_CUCSA7.2e-1771.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387180 PE=4 SV=1[more]
tr|A0A1S3BR54|A0A1S3BR54_CUCME1.4e-1568.42methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X3 OS=Cucum... [more]
tr|A0A1S3BR80|A0A1S3BR80_CUCME1.4e-1568.42methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2 OS=Cucum... [more]
tr|A0A1S3BQJ9|A0A1S3BQJ9_CUCME1.4e-1568.42methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1 OS=Cucum... [more]
tr|A0A2P4KE92|A0A2P4KE92_QUESU9.4e-0950.67Methylcrotonoyl-coa carboxylase subunit alpha, mitochondrial OS=Quercus suber OX... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07271-RACarg07271-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07271Cla014787Watermelon (97103) v1carwmB0106
Carg07271Csa7G387180Cucumber (Chinese Long) v2carcuB0118
Carg07271MELO3C015796Melon (DHL92) v3.5.1carmeB0111
Carg07271ClCG09G007320Watermelon (Charleston Gray)carwcgB0108
Carg07271CSPI07G16070Wild cucumber (PI 183967)carcpiB0123
Carg07271CmaCh08G003290Cucurbita maxima (Rimu)carcmaB0148
Carg07271CmoCh17G011760Cucurbita moschata (Rifu)carcmoB0152
Carg07271CmoCh08G003230Cucurbita moschata (Rifu)carcmoB0157
Carg07271Lsi02G022640Bottle gourd (USVL1VR-Ls)carlsiB098
Carg07271Cp4.1LG12g11440Cucurbita pepo (Zucchini)carcpeB0158
Carg07271Cp4.1LG17g06290Cucurbita pepo (Zucchini)carcpeB0161
Carg07271CsGy7G014560Cucumber (Gy14) v2carcgybB0119
Carg07271MELO3C015796.2Melon (DHL92) v3.6.1carmedB0113
Carg07271CsaV3_7G027810Cucumber (Chinese Long) v3carcucB0127
Carg07271Cla97C09G169920Watermelon (97103) v2carwmbB0117
Carg07271Bhi09G000877Wax gourdcarwgoB0134
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg07271Silver-seed gourdcarcarB063
Carg07271Silver-seed gourdcarcarB136
Carg07271Silver-seed gourdcarcarB131
Carg07271Silver-seed gourdcarcarB134
Carg07271Watermelon (Charleston Gray)carwcgB0113
Carg07271Cucumber (Gy14) v2carcgybB0116
Carg07271Cucumber (Gy14) v2carcgybB0120
Carg07271Cucumber (Gy14) v1carcgyB0129
Carg07271Cucumber (Gy14) v1carcgyB0134
Carg07271Cucurbita maxima (Rimu)carcmaB0140
Carg07271Cucurbita maxima (Rimu)carcmaB0142
Carg07271Cucurbita maxima (Rimu)carcmaB0144
Carg07271Cucurbita maxima (Rimu)carcmaB0146
Carg07271Cucurbita moschata (Rifu)carcmoB0150
Carg07271Cucurbita moschata (Rifu)carcmoB0154
Carg07271Cucurbita moschata (Rifu)carcmoB0155
Carg07271Cucurbita pepo (Zucchini)carcpeB0160
Carg07271Cucurbita pepo (Zucchini)carcpeB0163
Carg07271Cucurbita pepo (Zucchini)carcpeB0166
Carg07271Wild cucumber (PI 183967)carcpiB0120
Carg07271Wild cucumber (PI 183967)carcpiB0125
Carg07271Cucumber (Chinese Long) v2carcuB0115
Carg07271Cucumber (Chinese Long) v2carcuB0120
Carg07271Cucumber (Chinese Long) v3carcucB0124
Carg07271Cucumber (Chinese Long) v3carcucB0129
Carg07271Bottle gourd (USVL1VR-Ls)carlsiB100
Carg07271Bottle gourd (USVL1VR-Ls)carlsiB101
Carg07271Melon (DHL92) v3.5.1carmeB0115
Carg07271Melon (DHL92) v3.6.1carmedB0114
Carg07271Melon (DHL92) v3.6.1carmedB0118
Carg07271Watermelon (Charleston Gray)carwcgB0111
Carg07271Watermelon (97103) v1carwmB0109
Carg07271Watermelon (97103) v1carwmB0110
Carg07271Watermelon (97103) v2carwmbB0112
Carg07271Watermelon (97103) v2carwmbB0116
Carg07271Wax gourdcarwgoB0129
Carg07271Wax gourdcarwgoB0130
Carg07271Wax gourdcarwgoB0131