CmoCh17G011760 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G011760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionmethylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)
LocationCmo_Chr17 : 9464323 .. 9465779 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCGGGTTTCCAAATCTCAATCGATAAGAATAAAATACTGTTAAGTTGTAACTGATCATCGATATGCAGGTTTCGTTCCGGCGACTGGAAGTCTTCACCGTAATTGTTCCGTTCGTGTTTCAAGTCCAGTACGATATTTTATTTCACGAGTGTAGTAATTCAGTCTTCAGTTTCTGCAACTAGAAATGAATTTTGTTGAAATATCTTAGATGATTTCTTAGTTATGTCTGATTGCTTACTACCTTTTACTTGGAATTTTCTCGTTCGCTTTTATTTCAATGTTTTTTCTTGAAATTTTCAGTTTCTGCAGCTGGAGTTGAACAAGGAGATGCTGTTAGTGTGCATTATGATCCTATGATTGCTAAGCTTGTTTCGGGAGAAAATCGTGTTGTTTGAGGTAAATTTAGTCAGAATTAGTTTGCGTTGCGGAATTTACTGTTCAACATGATTTTCTTTTTGGACAAGAAACTAAAGTTTTCATTGAAAATAAGAATGATTTGGAATTTGAAGTAGTGAAGGTGGTAGACTTGGTTGCTTCAATGGCTAATATAGTTATTTTATAGCTGCTATTGATCAAGTTGTCTAATGATTCAATATCACGCTGCTTGTAGGTTTATGTTCAAGAGGTTTCTGACTTTGGCTTAGCTTTTTTAATTGACAGTGTGCTAAAATTGTGTAGAGTAAACATTTTGCAGCTAATTTTCAACCCTTCAAAAATTCAAATTCCTACAAAATCACTGAGGTCATTTCTCTTTCAGGCTTTCCTTCACGGTTTTTAAAATGTGTTTGGTGAGGAGGGGTTTTCACACCCTTATAAAGAATGCTTCGTTCGCCTAAGCCCACTGCTAGCAAATATTGTCCTCTTTAAGCTTTCTCTTTTAGAATTTTCTCTCAAGATTTTTATAAAGAATGTTTTGTTCCTCTCTCCAATCGATGTGGGATCTCACAATCCACCTCCTTCGTGGCCAGCATCCTCACTGGCACTCGTTCCTCTCTCCAATCGATGTGAGATCTCACATAAACTTTTTATTAAAACTTGCAAATCATTACGCATTTGAACGAGGGGATGTGGAAACTCATTTTATTGAGCGCTACAAAGATGACCTCTTTGTCGATCCTTCTAATCTTTTGATGGCAAAAGAAGGATATGAAGCTGCTGGACTTAATGCCCGTCTAGCTGCTGCTTGTATCGTCAGCTTGGAACATTCTAAACTTACTGAAAATTCTTCTGGTATTGCAAGCTCTTATCTATTTCTCTGACCTTAATTGTTTTAGAAAGCAGTTCTTAAATTGAAAATTCTTTATCTTATCAGGGAATGATTTATATTCAGTATAGAGTCCTCGTTGTGCTAGGTGCACAATGGAGTTTGAGTGGGAGAATCAATATGATAGCAGTGTCTCCAAGCCGTTTGCACTTACAAAATCACCTACCAGCAAGATGGGGCCTTTTTAA

mRNA sequence

ATGGCGCGGGTTTCGTTCCGGCGACTGGAAGTCTTCACCGTAATTGTTCCGTTCGTGTTTCAAGTCCAGTACGATATTTTATTTCACGAGTGTATTTCTGCAGCTGGAGTTGAACAAGGAGATGCTGTTAGTGTGCATTATGATCCTATGATTGCTAAGCTTGTTTCGGGAGAAAATCGTAGTCCTCGTTGTGCTAGGTGCACAATGGAGTTTGAGTGGGAGAATCAATATGATAGCAGTGTCTCCAAGCCGTTTGCACTTACAAAATCACCTACCAGCAAGATGGGGCCTTTTTAA

Coding sequence (CDS)

ATGGCGCGGGTTTCGTTCCGGCGACTGGAAGTCTTCACCGTAATTGTTCCGTTCGTGTTTCAAGTCCAGTACGATATTTTATTTCACGAGTGTATTTCTGCAGCTGGAGTTGAACAAGGAGATGCTGTTAGTGTGCATTATGATCCTATGATTGCTAAGCTTGTTTCGGGAGAAAATCGTAGTCCTCGTTGTGCTAGGTGCACAATGGAGTTTGAGTGGGAGAATCAATATGATAGCAGTGTCTCCAAGCCGTTTGCACTTACAAAATCACCTACCAGCAAGATGGGGCCTTTTTAA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005482Biotin_COase_C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G011760.1CmoCh17G011760.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005482Biotin carboxylase, C-terminalPFAMPF02785Biotin_carb_Ccoord: 35..61
score: 1.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G011760Carg07271Silver-seed gourdcarcmoB0152
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G011760Cucumber (Chinese Long) v3cmocucB0419
CmoCh17G011760Cucumber (Chinese Long) v3cmocucB0426
CmoCh17G011760Cucumber (Chinese Long) v3cmocucB0453
CmoCh17G011760Cucumber (Chinese Long) v3cmocucB0455
CmoCh17G011760Watermelon (97103) v2cmowmbB346
CmoCh17G011760Watermelon (97103) v2cmowmbB352
CmoCh17G011760Watermelon (97103) v2cmowmbB358
CmoCh17G011760Watermelon (97103) v2cmowmbB364
CmoCh17G011760Watermelon (97103) v2cmowmbB369
CmoCh17G011760Wax gourdcmowgoB0468
CmoCh17G011760Wax gourdcmowgoB0478
CmoCh17G011760Wax gourdcmowgoB0482
CmoCh17G011760Wax gourdcmowgoB0488
CmoCh17G011760Wax gourdcmowgoB0495
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB197
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB298
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB301
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB305
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB309
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB319
CmoCh17G011760Cucurbita moschata (Rifu)cmocmoB328
CmoCh17G011760Cucumber (Gy14) v1cgycmoB0152
CmoCh17G011760Cucumber (Gy14) v1cgycmoB0706
CmoCh17G011760Cucurbita maxima (Rimu)cmacmoB250
CmoCh17G011760Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G011760Cucurbita maxima (Rimu)cmacmoB506
CmoCh17G011760Cucurbita maxima (Rimu)cmacmoB774
CmoCh17G011760Cucurbita maxima (Rimu)cmacmoB813
CmoCh17G011760Cucurbita maxima (Rimu)cmacmoB896
CmoCh17G011760Wild cucumber (PI 183967)cmocpiB358
CmoCh17G011760Wild cucumber (PI 183967)cmocpiB380
CmoCh17G011760Wild cucumber (PI 183967)cmocpiB381
CmoCh17G011760Cucumber (Chinese Long) v2cmocuB353
CmoCh17G011760Cucumber (Chinese Long) v2cmocuB377
CmoCh17G011760Cucumber (Chinese Long) v2cmocuB378
CmoCh17G011760Melon (DHL92) v3.5.1cmomeB316
CmoCh17G011760Melon (DHL92) v3.5.1cmomeB338
CmoCh17G011760Watermelon (Charleston Gray)cmowcgB299
CmoCh17G011760Watermelon (Charleston Gray)cmowcgB317
CmoCh17G011760Watermelon (Charleston Gray)cmowcgB328
CmoCh17G011760Watermelon (97103) v1cmowmB322
CmoCh17G011760Watermelon (97103) v1cmowmB339
CmoCh17G011760Watermelon (97103) v1cmowmB342
CmoCh17G011760Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G011760Cucurbita pepo (Zucchini)cmocpeB337
CmoCh17G011760Cucurbita pepo (Zucchini)cmocpeB339
CmoCh17G011760Cucurbita pepo (Zucchini)cmocpeB350
CmoCh17G011760Cucurbita pepo (Zucchini)cmocpeB363
CmoCh17G011760Cucurbita pepo (Zucchini)cmocpeB370
CmoCh17G011760Bottle gourd (USVL1VR-Ls)cmolsiB325
CmoCh17G011760Bottle gourd (USVL1VR-Ls)cmolsiB337
CmoCh17G011760Bottle gourd (USVL1VR-Ls)cmolsiB343
CmoCh17G011760Bottle gourd (USVL1VR-Ls)cmolsiB344
CmoCh17G011760Cucumber (Gy14) v2cgybcmoB190
CmoCh17G011760Cucumber (Gy14) v2cgybcmoB322
CmoCh17G011760Cucumber (Gy14) v2cgybcmoB905
CmoCh17G011760Cucumber (Gy14) v2cgybcmoB910
CmoCh17G011760Melon (DHL92) v3.6.1cmomedB361
CmoCh17G011760Melon (DHL92) v3.6.1cmomedB362
CmoCh17G011760Melon (DHL92) v3.6.1cmomedB366
CmoCh17G011760Melon (DHL92) v3.6.1cmomedB387
CmoCh17G011760Silver-seed gourdcarcmoB0073
CmoCh17G011760Silver-seed gourdcarcmoB0447
CmoCh17G011760Silver-seed gourdcarcmoB1020
CmoCh17G011760Silver-seed gourdcarcmoB1144