Carg07244 (gene) Silver-seed gourd

Overview
NameCarg07244
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S19, putative
LocationCucurbita_argyrosperma_scaffold_017 : 874780 .. 876938 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTATCGCTCCTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTCTGCTCACTGAATTCCGCAGCCATGGCGACTGCAAGGACCGTTAAGGACGTCTCTCCTCACGAGTTTGTTAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTATCTATTGGGTTTTCTCAAATCGGGCTTTTCTGTTTTGGTGGCGGAGAGAACTTGATTTTCGGTTCAACGGAGATTTTAGGATGTCGATGAACAGAGCGAATACTGAATTTGAAGTTCCAACGGTTCTAGTTCATTCGTGGAGTGTGCTCGATTCTGCATTGGTTTCCCATTTTATTTACTTGTTTTGGCCCCTATTGTAGGTTTTTTAACATATCCTTCAGTATCAAGAATGGTGGTTGCAATTGTTAGGCTGTAGGCTTTTCTAATGACCTGCTACTAATTTGTAGCTAATAAACCAGTTATGATCTATAACATATGTGATTTAACTTATTTACTGTGTAAATCATTGTCGAGCAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCGAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGGTTAGTTTCCCTTTTTCTTCTTTTTGACGTCCAATTATATGAAATAAATAAATGAAAATGTAATTTAATTACGGCCGTTATATGCATGTTCTATCTGTGGTATTCATATGAACACTATTTCAAACTCATTCAGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGGTGAGTACAAGCTTCTTATAGTCCATGTTTTATAAAACTATTGAGGCTTATTCCATGAGTCAGTACTAACTTTTAGCCTCGAGACTTGCGCCTTCGATGAAAATAACAGGCTCATGCCTTTCATAGAAAAGCCTTACGCTTATGTTGAACAACTCATTGAGGCTTAAAATCTCTATCCCTTTTGCAATGATTAGAATAATAATATTGATTTGCCTCATTATTAATAAATACATATGTTTGAGTTGTGACAATTTGAATTATTACTACGACTTTGAAACATTGAAGAAAAAAATATTATAGTATAAGTCAATCCTACTCCTGATATTAGCAAGTGATGTTAAAGTTATTATTTTAGAATTCTTGTTTAAGGGTCAAATTGTAGTAGTGAGGTTTTTGTATATTTATTTTATTAAACTAATTTAGGATTTGAATAATGTTTTTAATTAAATTTGAGACTTGCACCTCGCCTGCTCGAGACAAACAACTTTGAGGCTTCCTTTAACCCTTTAAAACAATGCTTATAGTTATAGCTTATGAGGCATTACTACTACTCTTTTTCGCCGCGTTACACCTGATTTTTCATTTGATTATGTCTATTGATGTGTTTTTCTTTTTGCATGGGTTTGCAGTGGAAGGAGAATTACATCAAGCGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATCGATCAATTACCTGTTTTGTTAACTCGAGACTTGTATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCCATTGAAGTTTTAGATTTAGCCGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCTCGAGTTTTGAATTGTCTGTCATTTGCTCTTCCGTTCATTATATTTTTTATGCTCAATGTTTTATCAACACTAACTTTGCTTGGCCTACGGAAGTTCTGCATTTAGAGGTATATTTATTTAGTTCCTATTTCAAAAAAGTTCATTTTTTTATTTTAATACACAAATGTGATGAAATATAGATTGATTTACACGTTTTTTGAACTCTGTCACCTATGCCATTTTTAGATGTTAAATGGCGAGAGTGAATTTATAACTCTGATGTTAGAACATTTGGTTGTTAGAAAACATGGTTCGTTTTAGCGGTGGATGAAGCACGCTAATACCTTGAAAACATTGCTTTTATTATTACTATTTTGAAAATATATT

mRNA sequence

ACTTATCGCTCCTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTCTGCTCACTGAATTCCGCAGCCATGGCGACTGCAAGGACCGTTAAGGACGTCTCTCCTCACGAGTTTGTTAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCGAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACATCAAGCGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATCGATCAATTACCTGTTTTGTTAACTCGAGACTTGTATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCCATTGAAGTTTTAGATTTAGCCGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCTCGAGTTTTGAATTGTCTGTCATTTGCTCTTCCGTTCATTATATTTTTTATGCTCAATGTTTTATCAACACTAACTTTGCTTGGCCTACGGAAGTTCTGCATTTAGAGGTATATTTATTTAGTTCCTATTTCAAAAAAGTTCATTTTTTTATTTTAATACACAAATGTGATGAAATATAGATTGATTTACACGTTTTTTGAACTCTGTCACCTATGCCATTTTTAGATGTTAAATGGCGAGAGTGAATTTATAACTCTGATGTTAGAACATTTGGTTGTTAGAAAACATGGTTCGTTTTAGCGGTGGATGAAGCACGCTAATACCTTGAAAACATTGCTTTTATTATTACTATTTTGAAAATATATT

Coding sequence (CDS)

ATGGCGACTGCAAGGACCGTTAAGGACGTCTCTCCTCACGAGTTTGTTAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCGAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACATCAAGCGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAG

Protein sequence

MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Homology
[Close]
BLAST of Carg07244 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 5.1e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.0 bits (746), Expect = 1.1e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. NCBI nr
Match: XP_008451369.1 (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 7.3e-75
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. NCBI nr
Match: XP_004141465.1 (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >KGN52503.1 hypothetical protein Csa_5G638420 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 9.5e-75
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. TAIR10
Match: AT5G61170.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 261.9 bits (668), Expect = 2.3e-70
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Carg07244 vs. TAIR10
Match: AT3G02080.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 261.5 bits (667), Expect = 3.0e-70
Identity = 121/143 (84.62%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Carg07244 vs. TAIR10
Match: AT5G15520.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 256.5 bits (654), Expect = 9.5e-69
Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Carg07244 vs. Swiss-Prot
Match: sp|Q9FNP8|RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-69
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Carg07244 vs. Swiss-Prot
Match: sp|Q9SGA6|RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.3e-69
Identity = 121/143 (84.62%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Carg07244 vs. Swiss-Prot
Match: sp|Q9LF30|RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Carg07244 vs. Swiss-Prot
Match: sp|P40978|RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.2e-64
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 2   ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of Carg07244 vs. Swiss-Prot
Match: sp|Q94613|RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.3e-46
Identity = 77/134 (57.46%), Postives = 110/134 (82.09%), Query Frame = 0 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of Carg07244 vs. TrEMBL
Match: tr|A0A1S3BRB2|A0A1S3BRB2_CUCME (40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.8e-75
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. TrEMBL
Match: tr|A0A1S3CB93|A0A1S3CB93_CUCME (40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.3e-75
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. TrEMBL
Match: tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.3e-75
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. TrEMBL
Match: tr|A0A0A0K500|A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 7.0e-74
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPW DIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWADIVKTARFKELAPYDADWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI RHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Carg07244 vs. TrEMBL
Match: tr|B9H0J0|B9H0J0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G118800v3 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.7e-72
Identity = 131/143 (91.61%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAY+AHLKRSGKVELPPWTDIVKTA+FKELAPYDPDWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFC+SSG++ARHILQQLQ MNI+DVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143

The following BLAST results are available for this feature:
BLAST of Carg07244 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022954406.12.3e-76100.0040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_022923365.15.1e-7699.3040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso... [more]
XP_022938991.11.1e-7598.6040S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p... [more]
XP_008451369.17.3e-7598.60PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo][more]
XP_004141465.19.5e-7597.90PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICT... [more]
BLAST of Carg07244 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61170.12.3e-7085.92Ribosomal protein S19e family protein[more]
AT3G02080.13.0e-7084.62Ribosomal protein S19e family protein[more]
AT5G15520.19.5e-6986.33Ribosomal protein S19e family protein[more]
BLAST of Carg07244 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FNP8|RS193_ARATH4.1e-6985.9240S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
sp|Q9SGA6|RS191_ARATH5.3e-6984.6240S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
sp|Q9LF30|RS192_ARATH1.7e-6786.3340S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
sp|P40978|RS19_ORYSJ5.2e-6481.4340S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
sp|Q94613|RS19_MYAAR8.3e-4657.4640S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of Carg07244 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BRB2|A0A1S3BRB2_CUCME4.8e-7598.6040S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV... [more]
tr|A0A1S3CB93|A0A1S3CB93_CUCME6.3e-7597.9040S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1[more]
tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA6.3e-7597.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1[more]
tr|A0A0A0K500|A0A0A0K500_CUCSA7.0e-7497.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1[more]
tr|B9H0J0|B9H0J0_POPTR1.7e-7291.61Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G118800v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR018277Ribosomal_S19e_CS
IPR038111Ribosomal_S19e_sf
IPR001266Ribosomal_S19e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07244-RACarg07244-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
e-value: 1.9E-85
score: 299.9
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..140
e-value: 2.5E-57
score: 192.3
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 1..142
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 2..120
e-value: 3.0E-59
score: 574.0
IPR038111Ribosomal protein S19e domain superfamilyGENE3DG3DSA:1.10.10.2700coord: 1..142
e-value: 1.2E-63
score: 215.5
NoneNo IPR availablePANTHERPTHR11710:SF8SUBFAMILY NOT NAMEDcoord: 1..142
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 6..141

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07244Cla014756Watermelon (97103) v1carwmB0106
Carg07244Csa7G390010Cucumber (Chinese Long) v2carcuB0120
Carg07244MELO3C015841Melon (DHL92) v3.5.1carmeB0113
Carg07244ClCG09G006990Watermelon (Charleston Gray)carwcgB0108
Carg07244CSPI07G16420Wild cucumber (PI 183967)carcpiB0125
Carg07244Cucsa.084560Cucumber (Gy14) v1carcgyB0129
Carg07244CmaCh08G003550Cucurbita maxima (Rimu)carcmaB0148
Carg07244CmaCh17G011690Cucurbita maxima (Rimu)carcmaB0142
Carg07244CmoCh17G011460Cucurbita moschata (Rifu)carcmoB0152
Carg07244CmoCh08G003520Cucurbita moschata (Rifu)carcmoB0157
Carg07244Lsi02G022990Bottle gourd (USVL1VR-Ls)carlsiB098
Carg07244Cp4.1LG12g11690Cucurbita pepo (Zucchini)carcpeB0158
Carg07244CsGy7G014900Cucumber (Gy14) v2carcgybB0120
Carg07244MELO3C015841.2Melon (DHL92) v3.6.1carmedB0115
Carg07244CsaV3_7G028170Cucumber (Chinese Long) v3carcucB0129
Carg07244Bhi09G000861Wax gourdcarwgoB0131
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07244Carg22194Silver-seed gourdcarcarB135
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07244Watermelon (97103) v2carwmbB0115
Carg07244Watermelon (97103) v2carwmbB0116
Carg07244Watermelon (97103) v2carwmbB0117
Carg07244Wax gourdcarwgoB0130
Carg07244Silver-seed gourdcarcarB077
Carg07244Silver-seed gourdcarcarB131
Carg07244Watermelon (Charleston Gray)carwcgB0113
Carg07244Cucurbita maxima (Rimu)carcmaB0144
Carg07244Cucurbita moschata (Rifu)carcmoB0154
Carg07244Cucurbita pepo (Zucchini)carcpeB0160
Carg07244Cucurbita pepo (Zucchini)carcpeB0161
Carg07244Bottle gourd (USVL1VR-Ls)carlsiB100
Carg07244Watermelon (97103) v1carwmB0109