Carg07244-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTTATCGCTCCTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTCTGCTCACTGAATTCCGCAGCCATGGCGACTGCAAGGACCGTTAAGGACGTCTCTCCTCACGAGTTTGTTAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTATCTATTGGGTTTTCTCAAATCGGGCTTTTCTGTTTTGGTGGCGGAGAGAACTTGATTTTCGGTTCAACGGAGATTTTAGGATGTCGATGAACAGAGCGAATACTGAATTTGAAGTTCCAACGGTTCTAGTTCATTCGTGGAGTGTGCTCGATTCTGCATTGGTTTCCCATTTTATTTACTTGTTTTGGCCCCTATTGTAGGTTTTTTAACATATCCTTCAGTATCAAGAATGGTGGTTGCAATTGTTAGGCTGTAGGCTTTTCTAATGACCTGCTACTAATTTGTAGCTAATAAACCAGTTATGATCTATAACATATGTGATTTAACTTATTTACTGTGTAAATCATTGTCGAGCAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCGAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGGTTAGTTTCCCTTTTTCTTCTTTTTGACGTCCAATTATATGAAATAAATAAATGAAAATGTAATTTAATTACGGCCGTTATATGCATGTTCTATCTGTGGTATTCATATGAACACTATTTCAAACTCATTCAGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGGTGAGTACAAGCTTCTTATAGTCCATGTTTTATAAAACTATTGAGGCTTATTCCATGAGTCAGTACTAACTTTTAGCCTCGAGACTTGCGCCTTCGATGAAAATAACAGGCTCATGCCTTTCATAGAAAAGCCTTACGCTTATGTTGAACAACTCATTGAGGCTTAAAATCTCTATCCCTTTTGCAATGATTAGAATAATAATATTGATTTGCCTCATTATTAATAAATACATATGTTTGAGTTGTGACAATTTGAATTATTACTACGACTTTGAAACATTGAAGAAAAAAATATTATAGTATAAGTCAATCCTACTCCTGATATTAGCAAGTGATGTTAAAGTTATTATTTTAGAATTCTTGTTTAAGGGTCAAATTGTAGTAGTGAGGTTTTTGTATATTTATTTTATTAAACTAATTTAGGATTTGAATAATGTTTTTAATTAAATTTGAGACTTGCACCTCGCCTGCTCGAGACAAACAACTTTGAGGCTTCCTTTAACCCTTTAAAACAATGCTTATAGTTATAGCTTATGAGGCATTACTACTACTCTTTTTCGCCGCGTTACACCTGATTTTTCATTTGATTATGTCTATTGATGTGTTTTTCTTTTTGCATGGGTTTGCAGTGGAAGGAGAATTACATCAAGCGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATCGATCAATTACCTGTTTTGTTAACTCGAGACTTGTATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCCATTGAAGTTTTAGATTTAGCCGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCTCGAGTTTTGAATTGTCTGTCATTTGCTCTTCCGTTCATTATATTTTTTATGCTCAATGTTTTATCAACACTAACTTTGCTTGGCCTACGGAAGTTCTGCATTTAGAGGTATATTTATTTAGTTCCTATTTCAAAAAAGTTCATTTTTTTATTTTAATACACAAATGTGATGAAATATAGATTGATTTACACGTTTTTTGAACTCTGTCACCTATGCCATTTTTAGATGTTAAATGGCGAGAGTGAATTTATAACTCTGATGTTAGAACATTTGGTTGTTAGAAAACATGGTTCGTTTTAGCGGTGGATGAAGCACGCTAATACCTTGAAAACATTGCTTTTATTATTACTATTTTGAAAATATATT ACTTATCGCTCCTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTCTGCTCACTGAATTCCGCAGCCATGGCGACTGCAAGGACCGTTAAGGACGTCTCTCCTCACGAGTTTGTTAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCGAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACATCAAGCGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATCGATCAATTACCTGTTTTGTTAACTCGAGACTTGTATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCCATTGAAGTTTTAGATTTAGCCGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCTCGAGTTTTGAATTGTCTGTCATTTGCTCTTCCGTTCATTATATTTTTTATGCTCAATGTTTTATCAACACTAACTTTGCTTGGCCTACGGAAGTTCTGCATTTAGAGGTATATTTATTTAGTTCCTATTTCAAAAAAGTTCATTTTTTTATTTTAATACACAAATGTGATGAAATATAGATTGATTTACACGTTTTTTGAACTCTGTCACCTATGCCATTTTTAGATGTTAAATGGCGAGAGTGAATTTATAACTCTGATGTTAGAACATTTGGTTGTTAGAAAACATGGTTCGTTTTAGCGGTGGATGAAGCACGCTAATACCTTGAAAACATTGCTTTTATTATTACTATTTTGAAAATATATT ATGGCGACTGCAAGGACCGTTAAGGACGTCTCTCCTCACGAGTTTGTTAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCGAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGTGGAAGGAGAATTACATCAAGCGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAG MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
BLAST of Carg07244-RA vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg07244-RA vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 293.1 bits (749), Expect = 5.1e-76 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg07244-RA vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 292.0 bits (746), Expect = 1.1e-75 Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg07244-RA vs. NCBI nr
Match: XP_008451369.1 (PREDICTED: 40S ribosomal protein S19-3-like [Cucumis melo]) HSP 1 Score: 289.3 bits (739), Expect = 7.3e-75 Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0
BLAST of Carg07244-RA vs. NCBI nr
Match: XP_004141465.1 (PREDICTED: 40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >KGN52503.1 hypothetical protein Csa_5G638420 [Cucumis sativus]) HSP 1 Score: 288.9 bits (738), Expect = 9.5e-75 Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg07244-RA vs. TAIR10
Match: AT5G61170.1 (Ribosomal protein S19e family protein) HSP 1 Score: 261.9 bits (668), Expect = 2.3e-70 Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0
BLAST of Carg07244-RA vs. TAIR10
Match: AT3G02080.1 (Ribosomal protein S19e family protein) HSP 1 Score: 261.5 bits (667), Expect = 3.0e-70 Identity = 121/143 (84.62%), Postives = 134/143 (93.71%), Query Frame = 0
BLAST of Carg07244-RA vs. TAIR10
Match: AT5G15520.1 (Ribosomal protein S19e family protein) HSP 1 Score: 256.5 bits (654), Expect = 9.5e-69 Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0
BLAST of Carg07244-RA vs. Swiss-Prot
Match: sp|Q9FNP8|RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 4.1e-69 Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0
BLAST of Carg07244-RA vs. Swiss-Prot
Match: sp|Q9SGA6|RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 5.3e-69 Identity = 121/143 (84.62%), Postives = 134/143 (93.71%), Query Frame = 0
BLAST of Carg07244-RA vs. Swiss-Prot
Match: sp|Q9LF30|RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67 Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0
BLAST of Carg07244-RA vs. Swiss-Prot
Match: sp|P40978|RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 5.2e-64 Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 0
BLAST of Carg07244-RA vs. Swiss-Prot
Match: sp|Q94613|RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 8.3e-46 Identity = 77/134 (57.46%), Postives = 110/134 (82.09%), Query Frame = 0
BLAST of Carg07244-RA vs. TrEMBL
Match: tr|A0A1S3BRB2|A0A1S3BRB2_CUCME (40S ribosomal protein S19-3-like OS=Cucumis melo OX=3656 GN=LOC103492679 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 4.8e-75 Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0
BLAST of Carg07244-RA vs. TrEMBL
Match: tr|A0A1S3CB93|A0A1S3CB93_CUCME (40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 6.3e-75 Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg07244-RA vs. TrEMBL
Match: tr|A0A0A0KSI3|A0A0A0KSI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 6.3e-75 Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg07244-RA vs. TrEMBL
Match: tr|A0A0A0K500|A0A0A0K500_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390010 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 7.0e-74 Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 0
BLAST of Carg07244-RA vs. TrEMBL
Match: tr|B9H0J0|B9H0J0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G118800v3 PE=4 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 1.7e-72 Identity = 131/143 (91.61%), Postives = 142/143 (99.30%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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