Carg06955 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06955
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pollen preferential protein
Location	Cucurbita_argyrosperma_scaffold_065 : 518739 .. 519194 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGAACGTCCTCCTCCGATCCCCGCCAGAGACTCGCCAGCAACCACTACTGACAGACAAGTCGCCCAACAGACTTAAGGAAAAGCCGCGGTTCGCGGAGGTGGCCGGCGGAACGGCCGCGGAGTGCGCGGCAATATGCTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACCGTCTACAAGGTTCCAGTGGGGCTCTGCAAAAAGGCGTGGAATAAGAGGGGAAAACGACGTCACATCACGAAGAGAAACAAGGCGGCGGCGGCGGCGGGCGGTGCAACTGTAGGTAAGGAGGGGCCGAAACATGATGGTGAAAAGGAGGATTGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATGTGGAATTGGAGAAGGAGATGTGGGACCAATTTTATGGTACTGGCTTCTGGAGGACACCTTCTCAGAGAGAAACCTAA

mRNA sequence

ATGAATCAGAACGTCCTCCTCCGATCCCCGCCAGAGACTCGCCAGCAACCACTACTGACAGACAAGTCGCCCAACAGACTTAAGGAAAAGCCGCGGTTCGCGGAGGTGGCCGGCGGAACGGCCGCGGAGTGCGCGGCAATATGCTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACCGTCTACAAGGTTCCAGTGGGGCTCTGCAAAAAGGCGTGGAATAAGAGGGGAAAACGACGTCACATCACGAAGAGAAACAAGGCGGCGGCGGCGGCGGGCGGTGCAACTGTAGGTAAGGAGGGGCCGAAACATGATGGTGAAAAGGAGGATTGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATGTGGAATTGGAGAAGGAGATGTGGGACCAATTTTATGGTACTGGCTTCTGGAGGACACCTTCTCAGAGAGAAACCTAA

Coding sequence (CDS)

ATGAATCAGAACGTCCTCCTCCGATCCCCGCCAGAGACTCGCCAGCAACCACTACTGACAGACAAGTCGCCCAACAGACTTAAGGAAAAGCCGCGGTTCGCGGAGGTGGCCGGCGGAACGGCCGCGGAGTGCGCGGCAATATGCTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACCGTCTACAAGGTTCCAGTGGGGCTCTGCAAAAAGGCGTGGAATAAGAGGGGAAAACGACGTCACATCACGAAGAGAAACAAGGCGGCGGCGGCGGCGGGCGGTGCAACTGTAGGTAAGGAGGGGCCGAAACATGATGGTGAAAAGGAGGATTGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATGTGGAATTGGAGAAGGAGATGTGGGACCAATTTTATGGTACTGGCTTCTGGAGGACACCTTCTCAGAGAGAAACCTAA

Protein sequence

MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLILTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET

Homology

[Close]

BLAST of Carg06955 vs. NCBI nr
Match: XP_023512462.1 (uncharacterized protein LOC111777213 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-79
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSS 120
           LTVYKVPVGLCKKAWNKRGKRRHITKRNK AAAAGGATVGKEGPKHDGEKEDWGESLPSS
Sbjct: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNK-AAAAGGATVGKEGPKHDGEKEDWGESLPSS 120

Query: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           YLSSEDVELEKEMWDQFYGTGFWRTPSQRET
Sbjct: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 150

[Close]

BLAST of Carg06955 vs. NCBI nr
Match: XP_022943329.1 (uncharacterized protein LOC111448127 [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 5.2e-79
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSS 120
           LTVYKVPVGLCKKAWNKRGKRRHITKRNK  AAAGGATVGKEGPKHDGEKEDWGESLPSS
Sbjct: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNK--AAAGGATVGKEGPKHDGEKEDWGESLPSS 120

Query: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           YLSSEDVELEKEMWDQFYGTGFWRTPSQRET
Sbjct: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 149

[Close]

BLAST of Carg06955 vs. NCBI nr
Match: XP_022986081.1 (uncharacterized protein LOC111483938 [Cucurbita maxima])

HSP 1 Score: 289.3 bits (739), Expect = 7.7e-75
Identity = 142/153 (92.81%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAE+AGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAELAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKA--AAAAGGATVGKEGPKHDGEKEDWGESLP 120
           LTVYKVPVGLCKKAWN+RGKRRHITK+NKA        ATVGKEGPKHDGEKEDWGESLP
Sbjct: 61  LTVYKVPVGLCKKAWNRRGKRRHITKKNKAXXXXXXXXATVGKEGPKHDGEKEDWGESLP 120

Query: 121 SSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           SSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET
Sbjct: 121 SSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 153

[Close]

BLAST of Carg06955 vs. NCBI nr
Match: XP_004142253.1 (PREDICTED: uncharacterized protein LOC101219884 [Cucumis sativus] >KGN54056.1 hypothetical protein Csa_4G279850 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-61
Identity = 126/154 (81.82%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ VLLRSPP TRQQPLL DKS NR+KEK RFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQGVLLRSPPGTRQQPLLRDKSGNRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHD---GEKEDWGESL 120
           LTVYKVPVGLCKK WNKRGKRR I K+N   A AG    GKE   +D   GEKEDWGESL
Sbjct: 61  LTVYKVPVGLCKKVWNKRGKRREIAKKN---AGAG----GKEWAGNDDGGGEKEDWGESL 120

Query: 121 PSSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           PSSYLSSED+ELEKEMW++FYGTGFWRTPSQRET
Sbjct: 121 PSSYLSSEDIELEKEMWERFYGTGFWRTPSQRET 147

[Close]

BLAST of Carg06955 vs. NCBI nr
Match: XP_008449841.1 (PREDICTED: uncharacterized protein LOC103491601 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 5.9e-59
Identity = 121/151 (80.13%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ VLLRSPP TRQQPLL DKS N +KEK RFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQGVLLRSPPGTRQQPLLRDKSGNIVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSS 120
           LTVYKVPVGLCKK WNKRGKRR I K+N     AG    GKE    D EKEDWGESLPSS
Sbjct: 61  LTVYKVPVGLCKKVWNKRGKRREIAKKN-----AGAVVGGKEWGNDDREKEDWGESLPSS 120

Query: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           YLSSED+ELEKEMW++FYG GF RTPSQRET
Sbjct: 121 YLSSEDMELEKEMWERFYGNGFLRTPSQRET 146

[Close]

BLAST of Carg06955 vs. TAIR10
Match: AT3G11690.1 (unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 42  AECAAICCCFPCSMMNLLILTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGAT--- 101
           A CAA+ CC PC ++NLL+L +YKVP G+C++A   R +++ +           G     
Sbjct: 63  ASCAAVWCCCPCGLVNLLVLAIYKVPKGICRRAIRSRRRKQLVKNGILPPLPTDGKNERM 122

Query: 102 ----VGKEGPKH--------DGEKED-------WGESLPSSYLSSEDVE--------LEK 152
                  E   H        D E +D        G+S+ + + + E+ +        LEK
Sbjct: 123 QRVFQNSEFAIHPLDSDDVSDDEDDDNFLDLKYIGKSVATGFTTEEETDEDDEAVLALEK 182

[Close]

BLAST of Carg06955 vs. TAIR10
Match: AT2G27180.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-12
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 57  NLLILTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKED---- 116
           NL++L VYKVP  +CKKAW +R KRR  T++     A+  A  G E   H    E+    
Sbjct: 61  NLMVLAVYKVPAAVCKKAW-RRSKRRRFTRKRHGLLASATAE-GSESTVHARLNEEDLTA 120

Query: 117 ---WGESLPSSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
              + E   S    ++ V LE EM D+FYG GFWR+PSQ++T
Sbjct: 121 EIVFEECHVSGGELNDVVRLENEMLDRFYGAGFWRSPSQKDT 160

[Close]

BLAST of Carg06955 vs. TAIR10
Match: AT5G06380.1 (unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-11
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 46  AICCCFPCSMMNLLILTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPK 105
           A+C C PCS++NL++L VYK+P GLC++A  +R +R+ + K+        G   G+ G  
Sbjct: 36  ALCLCAPCSVVNLVVLAVYKLPRGLCRRA-IRRIRRKRLAKKE---FVESGREFGRGGSS 95

Query: 106 HDG--EKEDWGESLPSSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
                  E                 LEKEMW +FY  GFWR+ SQ ET
Sbjct: 96  QFAVHPLESRXXXXXXXXXXXXXXALEKEMWSRFYSGGFWRSLSQAET 139

[Close]

BLAST of Carg06955 vs. TrEMBL
Match: tr|A0A0A0L1Q3|A0A0A0L1Q3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279850 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.2e-61
Identity = 126/154 (81.82%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ VLLRSPP TRQQPLL DKS NR+KEK RFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQGVLLRSPPGTRQQPLLRDKSGNRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHD---GEKEDWGESL 120
           LTVYKVPVGLCKK WNKRGKRR I K+N   A AG    GKE   +D   GEKEDWGESL
Sbjct: 61  LTVYKVPVGLCKKVWNKRGKRREIAKKN---AGAG----GKEWAGNDDGGGEKEDWGESL 120

Query: 121 PSSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           PSSYLSSED+ELEKEMW++FYGTGFWRTPSQRET
Sbjct: 121 PSSYLSSEDIELEKEMWERFYGTGFWRTPSQRET 147

[Close]

BLAST of Carg06955 vs. TrEMBL
Match: tr|A0A1S3BMC5|A0A1S3BMC5_CUCME (uncharacterized protein LOC103491601 OS=Cucumis melo OX=3656 GN=LOC103491601 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.9e-59
Identity = 121/151 (80.13%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ VLLRSPP TRQQPLL DKS N +KEK RFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQGVLLRSPPGTRQQPLLRDKSGNIVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSS 120
           LTVYKVPVGLCKK WNKRGKRR I K+N     AG    GKE    D EKEDWGESLPSS
Sbjct: 61  LTVYKVPVGLCKKVWNKRGKRREIAKKN-----AGAVVGGKEWGNDDREKEDWGESLPSS 120

Query: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 152
           YLSSED+ELEKEMW++FYG GF RTPSQRET
Sbjct: 121 YLSSEDMELEKEMWERFYGNGFLRTPSQRET 146

[Close]

BLAST of Carg06955 vs. TrEMBL
Match: tr|A0A2P5BQ34|A0A2P5BQ34_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_220170 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MN+ V+ RSPP  R+  LL++KSP   KEK R  E+AGGTAAECAA+CCCFPC++MN ++
Sbjct: 1   MNRQVVQRSPPTNRRTLLLSEKSP-IFKEKRRIGELAGGTAAECAAVCCCFPCALMNFVV 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDW------- 120
           L VYKVP GLC++ W KR KR+   K  K           ++GP  +  + +W       
Sbjct: 61  LAVYKVPTGLCRQVWEKRKKRQRSAKMKKGLLLQKRPNGPRDGPVREEREAEWKRVKEAX 120

Query: 121 -------------GESLPSSYLSSEDVE-LEKEMWDQFYGTGFWRTPSQRE 151
                                 ++  V+ L++EMWD+FYG GFWR+PSQRE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXAAGTVDYLDEEMWDRFYGAGFWRSPSQRE 170

[Close]

BLAST of Carg06955 vs. TrEMBL
Match: tr|A0A1R3G0J8|A0A1R3G0J8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29686 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.0e-28
Identity = 74/159 (46.54%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           M+  VLLRSPP  R+QP          ++  +F EVAGGTAAECAA+ CC PC++M LLI
Sbjct: 1   MSGQVLLRSPPVRRRQPYTLPDDSKATRKGKKFGEVAGGTAAECAAVFCCCPCTVMELLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSS 120
           L +YKVP GLCKKAW KR +R H+ KRN+      G T+   GP  +  + +    +  +
Sbjct: 61  LGLYKVPTGLCKKAW-KRRQRHHLMKRNEVLL---GPTM--SGPTREEIEAELDRVVGRT 120

Query: 121 YLSSED--------VELEKEMWDQFYGTGFWRTPSQRET 152
            L  +D        V++E EMWD+FY TGFWR+PSQ++T
Sbjct: 121 GLGIDDQDDGSARTVDMENEMWDRFYATGFWRSPSQKDT 153

[Close]

BLAST of Carg06955 vs. TrEMBL
Match: tr|A0A1R3I398|A0A1R3I398_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25368 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 73/159 (45.91%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           M++ VLLRSPP  R QP       N  ++  +F EVAGGTAAECAA+ CC PC++M LLI
Sbjct: 1   MSRQVLLRSPPVRRSQPYTLSDDANATRKGKKFGEVAGGTAAECAAVFCCCPCTVMELLI 60

Query: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDWGESLPSS 120
           L +YKVP GLCKKAW KR +R  + KRN+      G T+   GP  +  + +    +  +
Sbjct: 61  LGLYKVPTGLCKKAW-KRRQRHRLMKRNEVLL---GPTM--SGPTREEIEAELDRVVGRT 120

Query: 121 YLSSED--------VELEKEMWDQFYGTGFWRTPSQRET 152
            L  +D        V++E EMW +FY TGFWR+PSQ++T
Sbjct: 121 GLGMDDQDDGSARSVDMENEMWGRFYATGFWRSPSQKDT 153

The following BLAST results are available for this feature:

BLAST of Carg06955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512462.1	1.4e-79	99.34	uncharacterized protein LOC111777213 [Cucurbita pepo subsp. pepo]	[more]
XP_022943329.1	5.2e-79	98.68	uncharacterized protein LOC111448127 [Cucurbita moschata]	[more]
XP_022986081.1	7.7e-75	92.81	uncharacterized protein LOC111483938 [Cucurbita maxima]	[more]
XP_004142253.1	6.3e-61	81.82	PREDICTED: uncharacterized protein LOC101219884 [Cucumis sativus] >KGN54056.1 hy...	[more]
XP_008449841.1	5.9e-59	80.13	PREDICTED: uncharacterized protein LOC103491601 [Cucumis melo]	[more]

BLAST of Carg06955 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11690.1	1.9e-14	33.57	unknown protein	[more]
AT2G27180.1	1.0e-12	42.16	unknown protein	[more]
AT5G06380.1	7.3e-11	37.04	unknown protein	[more]

BLAST of Carg06955 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06955 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1Q3\|A0A0A0L1Q3_CUCSA	4.2e-61	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279850 PE=4 SV=1	[more]
tr\|A0A1S3BMC5\|A0A1S3BMC5_CUCME	3.9e-59	80.13	uncharacterized protein LOC103491601 OS=Cucumis melo OX=3656 GN=LOC103491601 PE=...	[more]
tr\|A0A2P5BQ34\|A0A2P5BQ34_PARAD	1.2e-28	42.69	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_220170 PE...	[more]
tr\|A0A1R3G0J8\|A0A1R3G0J8_COCAP	8.0e-28	46.54	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29686 PE=4 ...	[more]
tr\|A0A1R3I398\|A0A1R3I398_9ROSI	3.0e-27	45.91	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25368 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06955-RA	Carg06955-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..121
None	No IPR available	PANTHER	PTHR33264	FAMILY NOT NAMED	coord: 20..150
None	No IPR available	PANTHER	PTHR33264:SF8	EXPRESSED PROTEIN	coord: 20..150

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06955	Cla003156	Watermelon (97103) v1	carwmB0520
Carg06955	Csa4G279850	Cucumber (Chinese Long) v2	carcuB0552
Carg06955	MELO3C014692	Melon (DHL92) v3.5.1	carmeB0528
Carg06955	ClCG02G024100	Watermelon (Charleston Gray)	carwcgB0503
Carg06955	CSPI04G12870	Wild cucumber (PI 183967)	carcpiB0559
Carg06955	Cucsa.153070	Cucumber (Gy14) v1	carcgyB0603
Carg06955	CmoCh20G000220	Cucurbita moschata (Rifu)	carcmoB0709
Carg06955	Lsi10G009560	Bottle gourd (USVL1VR-Ls)	carlsiB471
Carg06955	Cp4.1LG16g09170	Cucurbita pepo (Zucchini)	carcpeB0733
Carg06955	MELO3C014692.2	Melon (DHL92) v3.6.1	carmedB0533
Carg06955	Cla97C02G050320	Watermelon (97103) v2	carwmbB0543
Carg06955	Bhi10G000358	Wax gourd	carwgoB0629

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06955	Silver-seed gourd	carcarB209
Carg06955	Silver-seed gourd	carcarB463
Carg06955	Silver-seed gourd	carcarB498
Carg06955	Cucumber (Gy14) v2	carcgybB0529
Carg06955	Cucumber (Gy14) v1	carcgyB0599
Carg06955	Cucurbita maxima (Rimu)	carcmaB0726
Carg06955	Cucurbita maxima (Rimu)	carcmaB0732
Carg06955	Cucurbita maxima (Rimu)	carcmaB0733
Carg06955	Cucurbita moschata (Rifu)	carcmoB0704
Carg06955	Cucurbita moschata (Rifu)	carcmoB0710
Carg06955	Cucurbita pepo (Zucchini)	carcpeB0735
Carg06955	Cucurbita pepo (Zucchini)	carcpeB0741
Carg06955	Cucumber (Chinese Long) v3	carcucB0559