Carg06880 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06880
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LATERAL ROOT PRIMORDIUM 1-like
Location	Cucurbita_argyrosperma_scaffold_065 : 112654 .. 114407 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACCGTATATAGTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCTATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGTGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTATGTGGTCCGCCGCAGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCATGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGGTAAGAAAAATTGCCCCAAAATTTAGGGTTCCTTGTTTTTTCGGCGTTTCCCCCCCCCCCCCCCCCCATAAACTACGGATATTTTTTTATTCGTCGAATCGTTTGGTTCAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTCCCTAATGTATCGGAACTGAATTTGAGCGACGGTGGCGGTGGAGGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGGTTCTTCCCAGAATCAATCGGCAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCATCATCTTCTTGGACTGATT

mRNA sequence

AGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACCGTATATAGTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCTATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGTGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTATGTGGTCCGCCGCAGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCATGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTCCCTAATGTATCGGAACTGAATTTGAGCGACGGTGGCGGTGGAGGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCATCATCTTCTTGGACTGATT

Coding sequence (CDS)

ATGTGGTCCGCCGCAGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCATGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTCCCTAATGTATCGGAACTGAATTTGAGCGACGGTGGCGGTGGAGGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGA

Protein sequence

MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQIR

Homology

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BLAST of Carg06880 vs. NCBI nr
Match: XP_022944578.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 662.1 bits (1707), Expect = 1.1e-186
Identity = 367/373 (98.39%), Postives = 367/373 (98.39%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDXXXXXXXXXXXXXXXPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSD XXXXXXXXXXX   PFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGXXXXXXXXXXXSSAPFVDPSDVYNAAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 373
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

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BLAST of Carg06880 vs. NCBI nr
Match: XP_023512287.1 (protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 661.0 bits (1704), Expect = 2.4e-186
Identity = 364/373 (97.59%), Postives = 366/373 (98.12%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA XXX
Sbjct: 57  LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAAXXX 116

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 117 XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 176

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 177 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 236

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 237 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 296

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 297 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 356

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDXXXXXXXXXXXXXXXPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSEL+LSD XXXXXXXXXX    PFVDPSDVYNAAASGNGGAP
Sbjct: 357 KGFLYDQGVEAGDGFPNVSELHLSDGXXXXXXXXXXSSSAPFVDPSDVYNAAASGNGGAP 416

Query: 361 GFLGGSNYGNQIR 373
           GFLGGSNYGNQIR
Sbjct: 417 GFLGGSNYGNQIR 429

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BLAST of Carg06880 vs. NCBI nr
Match: XP_022987026.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima])

HSP 1 Score: 659.8 bits (1701), Expect = 5.3e-186
Identity = 354/372 (95.16%), Postives = 356/372 (95.70%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
           XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180
           SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR
Sbjct: 121 SSLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSR 180

Query: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240
           GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT
Sbjct: 181 GFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNT 240

Query: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300
           TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK
Sbjct: 241 TPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFK 300

Query: 301 GFLYDQGVEAGDGFPNVSELNLSDXXXXXXXXXXXXXXXPFVDPSDVYNAAASGNGGAPG 360
           GFLYDQGV+AGDGFPNVSEL+LSD               PFVDPSDVYN AASGNGGAPG
Sbjct: 301 GFLYDQGVDAGDGFPNVSELHLSD-GGGGSRNNRNGSSAPFVDPSDVYNVAASGNGGAPG 360

Query: 361 FLGGSNYGNQIR 373
           FLGGSNYGNQIR
Sbjct: 361 FLGGSNYGNQIR 371

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: XP_023532652.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.0 bits (1216), Expect = 9.3e-130
Identity = 257/372 (69.09%), Postives = 273/372 (73.39%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWSAAAA+QRSLNYGLGSEM MVGLRDV+VVAPA+SFNPNPHHHD NL+SD HSLA    
Sbjct: 1   MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLA---- 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
                       IPLLTAGPCLGVEEDNLL +RS +RGGGIQLWQQN     HYLKK P 
Sbjct: 61  VSNPATALGVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKKMP- 120

Query: 121 SSLDHHLHNASGTND-LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHN S  N+ L+  GIG+ GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNPSAANNGLLDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDC THVKSTWVPAARRRERQLM +T                                
Sbjct: 181 RGFDCTTHVKSTWVPAARRRERQLMGVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
                S+DTSSSHQDAGF E LPGQ+RAPAVFKCVRVTAVDDG+DEYAYQAVVKIGGH+F
Sbjct: 241 XXXXXSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDXXXXXXXXXXXXXXXPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVE GD FPNVSEL+L D               P VDPSDVYNAAA+G GGAP
Sbjct: 301 KGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGISSSPLVDPSDVYNAAATG-GGAP 360

Query: 361 GFLGGSNYGNQI 372
            FLGGSNYGNQI
Sbjct: 361 CFLGGSNYGNQI 361

[Close]

BLAST of Carg06880 vs. NCBI nr
Match: XP_022958220.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 451.4 bits (1160), Expect = 2.9e-123
Identity = 249/373 (66.76%), Postives = 263/373 (70.51%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWSAAAA+QRSLNYGLGSEM MVGLRDV+VVAPA+SFNPNPHHHD NL+SD HSLA    
Sbjct: 1   MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLA---- 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
                       IPLLTAGPCLGVEEDNLL +RS +RGGGIQLWQQN     HYLKK P 
Sbjct: 61  VSNSATALGVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKKMP- 120

Query: 121 SSLDHHLHNASGTND-LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHN S  N+ LI  GIG+ GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDC THVKSTWVPAAR                                          
Sbjct: 181 RGFDCTTHVKSTWVPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
                 +DTSSSHQDAGF E LPGQ+RAPAVFKCVRVTAVDDG+DEYAYQAVVKIGGH+F
Sbjct: 241 XXXXXXLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSD-XXXXXXXXXXXXXXXPFVDPSDVYNAAASGNGGA 360
           KGFLYDQGVE GD FPNVSEL+L D                P VDPSDVYNAAA+G GGA
Sbjct: 301 KGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGA 360

Query: 361 PGFLGGSNYGNQI 372
           P FLGGSNYGNQI
Sbjct: 361 PCFLGGSNYGNQI 363

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BLAST of Carg06880 vs. TAIR10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 184.9 bits (468), Expect = 9.1e-47
Identity = 142/328 (43.29%), Postives = 165/328 (50.30%), Query Frame = 0


Query: 11  SLNYGLGS-----EMGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAXXXXXXXX 70
           S+ YGL S     EMGMVGLRDV++VAPA       HH +  +IS  DH          X
Sbjct: 74  SVRYGLPSSAAATEMGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAX 133

Query: 71  XXXXXXXXIPLLTAG-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSS 130
           XXX     IPLLTAG P   VE+   N LG+         + WQ                
Sbjct: 134 XXXLGVGVIPLLTAGTPQQNVEDSDINFLGNN--------RRWQ-----------XXXXX 193

Query: 131 SLDHHLHNASGTNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRG 190
                LH  S T                       CQDCGNQAKK+C + RCRTCC+SRG
Sbjct: 194 XXXXXLHFKS-TXXXXXXXXXXXXXXXXXXXXXXXCQDCGNQAKKECKQRRCRTCCKSRG 253

Query: 191 FDCATHVKSTWVPAARRRERQLMAITGTAADGSSGS-------ASGTKKPRLIASQTTSH 250
           FDC+THVKSTWV AARRRERQ+M        GSS S                        
Sbjct: 254 FDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSXXXXXXXXXXXXXXXXXXXXXXXX 313

Query: 251 TSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKI 310
                                  +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKI
Sbjct: 314 XXXXXXXXXXXXXXXXXXXXXXXREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKI 371

Query: 311 GGHVFKGFLYDQGVEAGDGFPNVSELNL 323
           GGHVFKGFLYDQG+E  +GFP++S+L+L
Sbjct: 374 GGHVFKGFLYDQGLEPKEGFPSMSDLHL 371

[Close]

BLAST of Carg06880 vs. TAIR10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-33
Identity = 96/224 (42.86%), Postives = 120/224 (53.57%), Query Frame = 0


Query: 91  GSRSGSRGGGIQLWQQ-NQQSTQHYLKKTPSSSLDHHLHNAS-GTNDLIGGGIGVFGGL- 150
           G    S  G ++LWQ  N Q             LD +   A  G        I   GG  
Sbjct: 47  GEAGPSYKGTLELWQHPNNQXXXXXXXXXXXXXLDLYTSAAGLGVGPSNRSLIETSGGAL 106

Query: 151 ----ASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL 210
               + S S   +CQDCGNQ+KK  S  RCRTCC+SRG DC THVKSTWVPAA+RRERQ 
Sbjct: 107 MMMRSGSGSGGPSCQDCGNQSKKXXSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQ 166

Query: 211 MAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPG 270
              TG       GS    ++ R+ A      TS + T  P +   ++S  + G     P 
Sbjct: 167 QLSTGQQPQQLGGSVPKRQRERIPARS----TSMAYTRIPSN---NTSGLEVG---NFPP 226

Query: 271 QIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 308
           ++ + AVF+CVRV++VDD E+EYAY+  V IGGHVFKG LYDQG
Sbjct: 227 EVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQG 260

[Close]

BLAST of Carg06880 vs. TAIR10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-33
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 156 TCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSS 215
           +CQDCGNQAKKDCS  RCRTCC+SRGF+C+THV+STWVPAA+RRERQ    T        
Sbjct: 143 SCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLP 202

Query: 216 GSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVR 275
              S  K+ R     T+S    +       ++  +           P ++ + AVF+CVR
Sbjct: 203 RGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN----------FPAEVSSSAVFRCVR 262

Query: 276 VTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 308
           V++V+DGE+E+AYQ  V IGGH+FKG LYD G
Sbjct: 263 VSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Carg06880 vs. TAIR10
Match: AT1G19790.1 (SHI-related sequence 7)

HSP 1 Score: 136.0 bits (341), Expect = 4.9e-32
Identity = 78/166 (46.99%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 145 GGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLM 204
           GG   +      CQDCGNQAKKDC   RCRTCC+SRGFDC THVKSTWV AA+RRERQ  
Sbjct: 107 GGFTVTRQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQ 166

Query: 205 AITGTA---ADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEEL 264
                A    D +S                              ++ SSS  +      L
Sbjct: 167 LAVLPAKRIRDANSRXXXXXXXXXXXXXXXXXXXXXXXXXCTRVVNASSSGLET---SHL 226

Query: 265 PGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 308
           P +I +PAVF+C+RV+++DD ++EYAYQ  V IGGHVFKG LYDQG
Sbjct: 227 PPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQG 269

[Close]

BLAST of Carg06880 vs. TAIR10
Match: AT2G18120.1 (SHI-related sequence 4)

HSP 1 Score: 135.6 bits (340), Expect = 6.4e-32
Identity = 85/208 (40.87%), Postives = 114/208 (54.81%), Query Frame = 0


Query: 105 QQNQQSTQHYLKKTPSSSLDHHLHN---ASGTNDLIGGGIGVFGGLASSSSATTTCQDCG 164
           + NQQ+T     K  +++L    +N      + DL  G I V     SS S T +CQ+CG
Sbjct: 17  EDNQQNTNWVWYKHTNNNLSTSHNNQIWQQPSLDLYPGQIDVCDMTTSSRSLTISCQECG 76

Query: 165 NQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGT 224
           NQAKK C+ GRCRTCC+S G  C THV+STW+P A+RRERQ    T T+    +G +   
Sbjct: 77  NQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTS--NPTGGSGRV 136

Query: 225 KKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDD 284
            K R I    T                 SS  + G +   P ++ + A+F+CVR++  DD
Sbjct: 137 GKYRDINQHAT---------------LDSSGLEMG-ETRFPDEVSSDALFRCVRMSGTDD 196

Query: 285 GEDEYAYQAVVKIGGHVFKGFLYDQGVE 310
           GE +YAYQ  V I GH+FKG LY+QG E
Sbjct: 197 GEGQYAYQTTVGIAGHLFKGILYNQGPE 206

[Close]

BLAST of Carg06880 vs. Swiss-Prot
Match: sp|Q94CK9|LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.3e-44
Identity = 135/314 (42.99%), Postives = 157/314 (50.00%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAXXXXXXXXXXXXXXXXIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH          XXX      IPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAXXXALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTND 139
           G P   VE+   N LG+         + WQ                     LH  S T  
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQ-----------XXXXXXXXXXLHFKS-TXX 120

Query: 140 LIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPA 199
                                CQDCGNQAKK+C + RCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 200 ARRRERQLMAITGTAADGSSGS-------ASGTKKPRLIASQTTSHTSTSNTTPPGSIDT 259
           ARRRERQ+M        GSS S                                      
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 260 SSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGV 319
                    +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFLYDQG+
Sbjct: 241 XXXXXXXXXREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGL 284

Query: 320 EAGDGFPNVSELNL 323
           E  +GFP++S+L+L
Sbjct: 301 EPKEGFPSMSDLHL 284

[Close]

BLAST of Carg06880 vs. Swiss-Prot
Match: sp|Q9XGX0|SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-32
Identity = 96/224 (42.86%), Postives = 120/224 (53.57%), Query Frame = 0


Query: 91  GSRSGSRGGGIQLWQQ-NQQSTQHYLKKTPSSSLDHHLHNAS-GTNDLIGGGIGVFGGL- 150
           G    S  G ++LWQ  N Q             LD +   A  G        I   GG  
Sbjct: 47  GEAGPSYKGTLELWQHPNNQXXXXXXXXXXXXXLDLYTSAAGLGVGPSNRSLIETSGGAL 106

Query: 151 ----ASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL 210
               + S S   +CQDCGNQ+KK  S  RCRTCC+SRG DC THVKSTWVPAA+RRERQ 
Sbjct: 107 MMMRSGSGSGGPSCQDCGNQSKKXXSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQ 166

Query: 211 MAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPG 270
              TG       GS    ++ R+ A      TS + T  P +   ++S  + G     P 
Sbjct: 167 QLSTGQQPQQLGGSVPKRQRERIPARS----TSMAYTRIPSN---NTSGLEVG---NFPP 226

Query: 271 QIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 308
           ++ + AVF+CVRV++VDD E+EYAY+  V IGGHVFKG LYDQG
Sbjct: 227 EVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQG 260

[Close]

BLAST of Carg06880 vs. Swiss-Prot
Match: sp|Q9SD40|SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-31
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 156 TCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSS 215
           +CQDCGNQAKKDCS  RCRTCC+SRGF+C+THV+STWVPAA+RRERQ    T        
Sbjct: 143 SCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLP 202

Query: 216 GSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVR 275
              S  K+ R     T+S    +       ++  +           P ++ + AVF+CVR
Sbjct: 203 RGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN----------FPAEVSSSAVFRCVR 262

Query: 276 VTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 308
           V++V+DGE+E+AYQ  V IGGH+FKG LYD G
Sbjct: 263 VSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Carg06880 vs. Swiss-Prot
Match: sp|Q9FXH7|SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.8e-31
Identity = 78/166 (46.99%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 145 GGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLM 204
           GG   +      CQDCGNQAKKDC   RCRTCC+SRGFDC THVKSTWV AA+RRERQ  
Sbjct: 107 GGFTVTRQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQ 166

Query: 205 AITGTA---ADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEEL 264
                A    D +S                              ++ SSS  +      L
Sbjct: 167 LAVLPAKRIRDANSRXXXXXXXXXXXXXXXXXXXXXXXXXCTRVVNASSSGLET---SHL 226

Query: 265 PGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 308
           P +I +PAVF+C+RV+++DD ++EYAYQ  V IGGHVFKG LYDQG
Sbjct: 227 PPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQG 269

[Close]

BLAST of Carg06880 vs. Swiss-Prot
Match: sp|Q9SI19|SRS4_ARATH (Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=SRS4 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-30
Identity = 85/208 (40.87%), Postives = 114/208 (54.81%), Query Frame = 0


Query: 105 QQNQQSTQHYLKKTPSSSLDHHLHN---ASGTNDLIGGGIGVFGGLASSSSATTTCQDCG 164
           + NQQ+T     K  +++L    +N      + DL  G I V     SS S T +CQ+CG
Sbjct: 17  EDNQQNTNWVWYKHTNNNLSTSHNNQIWQQPSLDLYPGQIDVCDMTTSSRSLTISCQECG 76

Query: 165 NQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGT 224
           NQAKK C+ GRCRTCC+S G  C THV+STW+P A+RRERQ    T T+    +G +   
Sbjct: 77  NQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTS--NPTGGSGRV 136

Query: 225 KKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDD 284
            K R I    T                 SS  + G +   P ++ + A+F+CVR++  DD
Sbjct: 137 GKYRDINQHAT---------------LDSSGLEMG-ETRFPDEVSSDALFRCVRMSGTDD 196

Query: 285 GEDEYAYQAVVKIGGHVFKGFLYDQGVE 310
           GE +YAYQ  V I GH+FKG LY+QG E
Sbjct: 197 GEGQYAYQTTVGIAGHLFKGILYNQGPE 206

[Close]

BLAST of Carg06880 vs. TrEMBL
Match: tr|A0A1S3BMJ0|A0A1S3BMJ0_CUCME (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.7e-109
Identity = 241/375 (64.27%), Postives = 253/375 (67.47%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLA    
Sbjct: 1   MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
               XXXXXXXXIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 61  ATALXXXXXXXXIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGT N+LIG                  CQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGXXXXXXXXXXXXXXXXXXCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAAR                                          
Sbjct: 181 RGFDCATHVKSTWVPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TTPPG-SIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
                 S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 XXXXXRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--XXXXXXXXXXXXXXXPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D                 P VDPSDVYN AASG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 360

Query: 361 GAPGFLGGSNYGNQI 372
           G PGFLGGSNYGNQI
Sbjct: 361 GVPGFLGGSNYGNQI 365

[Close]

BLAST of Carg06880 vs. TrEMBL
Match: tr|A0A1S3BN66|A0A1S3BN66_CUCME (protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 238/372 (63.98%), Postives = 250/372 (67.20%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLA    
Sbjct: 1   MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
               XXXXXXXXIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 61  ATALXXXXXXXXIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGT N+LIG                  CQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGXXXXXXXXXXXXXXXXXXCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAAR                                          
Sbjct: 181 RGFDCATHVKSTWVPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TTPPG-SIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
                 S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 XXXXXRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--XXXXXXXXXXXXXXXPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D                 P VDPSDVYN AASG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 360

Query: 361 GAPGFLGGSNYG 369
           G PGFLGGSNYG
Sbjct: 361 GVPGFLGGSNYG 362

[Close]

BLAST of Carg06880 vs. TrEMBL
Match: tr|A0A1S3BMI2|A0A1S3BMI2_CUCME (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.6e-107
Identity = 237/371 (63.88%), Postives = 249/371 (67.12%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLA    
Sbjct: 1   MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
               XXXXXXXXIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 61  ATALXXXXXXXXIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGT N+LIG                  CQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGXXXXXXXXXXXXXXXXXXCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAAR                                          
Sbjct: 181 RGFDCATHVKSTWVPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TTPPG-SIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
                 S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 XXXXXRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--XXXXXXXXXXXXXXXPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D                 P VDPSDVYN AASG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 360

Query: 361 GAPGFLGGSNY 368
           G PGFLGGSNY
Sbjct: 361 GVPGFLGGSNY 361

[Close]

BLAST of Carg06880 vs. TrEMBL
Match: tr|A0A0A0KF01|A0A0A0KF01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432270 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.6e-106
Identity = 254/375 (67.73%), Postives = 265/375 (70.67%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAXXXX 60
           MWS  AAAQRSLNYG GSEMGMVGLRDVYVVAPA+SFN NP  HD NL+SD HSLA    
Sbjct: 1   MWS--AAAQRSLNYGFGSEMGMVGLRDVYVVAPASSFNQNPQQHDVNLLSDPHSLAVSNP 60

Query: 61  XXXXXXXXXXXXIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120
               XXXXXXXXIPLLTAGPCLGVEE+N  G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 61  ATALXXXXXXXXIPLLTAGPCLGVEEENFFGNRS-NRGGGIQF----QQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGT N+LIG                  CQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGXXXXXXXXXXXXXXXXXXCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAAR                                          
Sbjct: 181 RGFDCATHVKSTWVPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TTPPG-SIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
                 S+DTSSSHQDAG KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 XXXXXRSLDTSSSHQDAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--XXXXXXXXXXXXXXXPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D  XXXXXXXXXXXXXXXP VDPSDVYN A SG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDXXXXXXXXXXXXXXXXXPLVDPSDVYNTAGSGSG 360

Query: 361 GAPGFLGGSNYGNQI 372
           G PGFLGGSNYGNQI
Sbjct: 361 GVPGFLGGSNYGNQI 364

[Close]

BLAST of Carg06880 vs. TrEMBL
Match: tr|A0A2P5DR48|A0A2P5DR48_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_040180 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.6e-91
Identity = 246/404 (60.89%), Postives = 267/404 (66.09%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPH-------HHDPNLISDDH 60
           MWS   +  R +NYGL  EMGMVGLRDV+VVA                 +HDP+LIS DH
Sbjct: 83  MWSGPPS--RPINYGLPPEMGMVGLRDVFVVAXXXXXXXXXXXXXXXXLNHDPSLIS-DH 142

Query: 61  SLAXXXXXXXXXXXXXXXXIPLLTAGPCLG----------VEEDNLLGSRSG-SRGGGIQ 120
           SL        XXXXXXXXXIPLLTA PCL             E N  G+ S  SRGGGIQ
Sbjct: 143 SLNGSNPATAXXXXXXXXXIPLLTATPCLAPPHHQQLDEVSAEANAFGAASARSRGGGIQ 202

Query: 121 LWQ-QNQ---------QSTQHYLKKTPSSSLDHHLHNASGTNDLIGGGIGVFGGLASSSS 180
           LWQ QNQ         Q  QH  KK   S LDH  ++ +                     
Sbjct: 203 LWQSQNQAAAGSAAQPQLHQHLFKK--PSILDHG-NSGAXXXXXXXXXXXXXXXXXXXXX 262

Query: 181 ATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTA-- 240
                QDCGNQAKKDC+  RCRTCC+SRGF+CATHVKSTWVPAARRRERQL+   G    
Sbjct: 263 XXXXXQDCGNQAKKDCTHRRCRTCCKSRGFECATHVKSTWVPAARRRERQLITAAGPGVG 322

Query: 241 -ADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPA 300
              GSSGS SG KKPRLI SQTTSHTSTSNTTPP S DTSSSHQDA FKE LPGQ+RAPA
Sbjct: 323 NGPGSSGSTSGAKKPRLITSQTTSHTSTSNTTPPRSFDTSSSHQDASFKESLPGQVRAPA 382

Query: 301 VFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELNLS--DXXX 360
           VFKCVRVTAV+DGEDEYAYQAVVKIGGHVFKGFLYDQGVE  D FPN+SEL+L    XXX
Sbjct: 383 VFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVETRDAFPNLSELHLGXXXXXX 442

Query: 361 XXXXXXXXXXXXPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQI 372
           XXXXXXXXXXXX  +DPSDVY AA++G     G LGGS+YGN I
Sbjct: 443 XXXXXXXXXXXXXILDPSDVY-AASTG-----GLLGGSSYGNPI 474

The following BLAST results are available for this feature:

BLAST of Carg06880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944578.1	1.1e-186	98.39	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]	[more]
XP_023512287.1	2.4e-186	97.59	protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022987026.1	5.3e-186	95.16	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima]	[more]
XP_023532652.1	9.3e-130	69.09	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958220.1	2.9e-123	66.76	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]	[more]

BLAST of Carg06880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12330.4	9.1e-47	43.29	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	3.4e-33	42.86	Lateral root primordium (LRP) protein-related	[more]
AT3G51060.1	5.8e-33	48.03	Lateral root primordium (LRP) protein-related	[more]
AT1G19790.1	4.9e-32	46.99	SHI-related sequence 7	[more]
AT2G18120.1	6.4e-32	40.87	SHI-related sequence 4	[more]

BLAST of Carg06880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94CK9\|LRP1_ARATH	5.3e-44	42.99	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
sp\|Q9XGX0\|SHI_ARATH	6.1e-32	42.86	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
sp\|Q9SD40\|SRS1_ARATH	1.0e-31	48.03	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
sp\|Q9FXH7\|SRS7_ARATH	8.8e-31	46.99	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]
sp\|Q9SI19\|SRS4_ARATH	1.1e-30	40.87	Protein SHI RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=SRS4 PE=1 SV=1	[more]

BLAST of Carg06880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BMJ0\|A0A1S3BMJ0_CUCME	2.7e-109	64.27	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3BN66\|A0A1S3BN66_CUCME	1.9e-107	63.98	protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3BMI2\|A0A1S3BMI2_CUCME	5.6e-107	63.88	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0KF01\|A0A0A0KF01_CUCSA	1.6e-106	67.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432270 PE=4 SV=1	[more]
tr\|A0A2P5DR48\|A0A2P5DR48_PARAD	9.6e-91	60.89	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_040180 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007818	SHI
IPR006510	Znf_LRP1
IPR006511	SHI_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06880-RA	Carg06880-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 261..308 e-value: 3.5E-30 score: 101.7
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 156..198 e-value: 2.8E-25 score: 85.9
None	No IPR available	PFAM	PF05142	DUF702	coord: 154..309 e-value: 6.7E-61 score: 205.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..342
None	No IPR available	PANTHER	PTHR31604:SF2	PROTEIN SHI RELATED SEQUENCE 6	coord: 23..367
IPR007818	SHI protein family	PANTHER	PTHR31604	FAMILY NOT NAMED	coord: 23..367

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06880	Cla008574	Watermelon (97103) v1	carwmB0520
Carg06880	Csa1G628000	Cucumber (Chinese Long) v2	carcuB0551
Carg06880	Csa6G432270	Cucumber (Chinese Long) v2	carcuB0553
Carg06880	MELO3C014564	Melon (DHL92) v3.5.1	carmeB0528
Carg06880	MELO3C015123	Melon (DHL92) v3.5.1	carmeB0527
Carg06880	ClCG03G012640	Watermelon (Charleston Gray)	carwcgB0505
Carg06880	ClCG02G022900	Watermelon (Charleston Gray)	carwcgB0503
Carg06880	CSPI01G30960	Wild cucumber (PI 183967)	carcpiB0558
Carg06880	CSPI06G23890	Wild cucumber (PI 183967)	carcpiB0560
Carg06880	Cucsa.087040	Cucumber (Gy14) v1	carcgyB0595
Carg06880	CmaCh02G012730	Cucurbita maxima (Rimu)	carcmaB0733
Carg06880	CmaCh20G001080	Cucurbita maxima (Rimu)	carcmaB0732
Carg06880	CmoCh11G008930	Cucurbita moschata (Rifu)	carcmoB0704
Carg06880	CmoCh02G013150	Cucurbita moschata (Rifu)	carcmoB0710
Carg06880	CmoCh20G001160	Cucurbita moschata (Rifu)	carcmoB0709
Carg06880	Lsi10G010870	Bottle gourd (USVL1VR-Ls)	carlsiB471
Carg06880	Lsi06G005760	Bottle gourd (USVL1VR-Ls)	carlsiB477
Carg06880	Cp4.1LG05g04760	Cucurbita pepo (Zucchini)	carcpeB0741
Carg06880	Cp4.1LG16g08610	Cucurbita pepo (Zucchini)	carcpeB0733
Carg06880	Cp4.1LG04g12290	Cucurbita pepo (Zucchini)	carcpeB0740
Carg06880	CsGy1G030220	Cucumber (Gy14) v2	carcgybB0527
Carg06880	CsGy6G023240	Cucumber (Gy14) v2	carcgybB0530
Carg06880	MELO3C014564.2	Melon (DHL92) v3.6.1	carmedB0533
Carg06880	CsaV3_6G039030	Cucumber (Chinese Long) v3	carcucB0560
Carg06880	CsaV3_1G043360	Cucumber (Chinese Long) v3	carcucB0557
Carg06880	Cla97C02G048970	Watermelon (97103) v2	carwmbB0543
Carg06880	Cla97C03G062920	Watermelon (97103) v2	carwmbB0546
Carg06880	Bhi10G000200	Wax gourd	carwgoB0629
Carg06880	Bhi02G001250	Wax gourd	carwgoB0635

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06880	Carg02690	Silver-seed gourd	carcarB498

The following block(s) are covering this gene:

None