Carg06796 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06796
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box protein At1g67340
Location	Cucurbita_argyrosperma_scaffold_012 : 1057825 .. 1059313 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCATGCTCTAACTACGATCCAAATCTGGCTTCCTATAATCCTCCATTAACGGACCTCAATCGTTTGCAGTCCTTTCATGACGGTTCCATTTTCAAGGTGAAGGCCACAACGACGACCAATCTATTACACTCTGGAATGGTGTGCAACAAAAGGAGGAGAACTTCGACCACCACCGCCGCCGGGATTCATGATCTCTTCGACGATTTGCCGGATGATTTACTCGTCCTCCTCCTCGGCAAACTTAGCGCCAACGCTTCTTCTCCTTCAGATCTCGTCAATGTTATGTTGACGTAAGAATCGCGTAACTTGTGGTTTCTTTAATTTCTGTTTCTGTTGTGATTTTCGTTTGATGTTCGTGAGACGAATCATAGATGTAAGAGGTTCAATCGATTGGCTCTGCATCCGATGGTGCTATCGAAAGCTGGACCTAAAGCATTTGAAATCCGAATTAAAAACTGGTGCGAATCGACTCATCGATTCCTGAAATTGTGCGTTTCTGCCGGTAATCTTGAAGCGTGCTACACTCTAGGAATGGTCCGTATAATCGATTGATTTTTCTGTCTGTAATTTCAGATTCGGTTATGATTTGTTTGCTGATTTCGTTTTTTGTAGGTCGAATTTTATTGTATGAAGAACAGAGGAAATGGAGCTTCGTTAATGGCGAAGGCCGCGATTAAATCTCATCCGTTGGCGCTTTACTCCCTCGCAATCGTACAGTTTAATGGAAGCGGTGGTTCAAAGAGCGACAAGAATCTTCGTGCAGGTGTGGCTTTGTGCGGACGAGCCGCTTGTCTCGGTCATATCGATGCGCTTCGCGAACTAGGTCACTGTCTTCAAGACGGTTACGGCGTCGCTCAAAACGCGTCCGAGGGACGTCGTCTCTTAATCGAAGCCAACGCGCGTGAGCTCGCGTCGATAACAAACTCCTCTCTCCGCCGTCTCAACTGCTCCGTCGACCGCCCTACCACGACGGATTCCAGCGGATCGCTTCTTAGTGATTTCGGCTACAACATTCCGGCGCCGGAGGTTCATCCGGCGAATCAATTTTTAAGAGATTGGTTCACTTCTGGCCGTGGATTTATCGCTGAAGGTTTGAGACTCTGCTCGAATAGTGGCTGTGGAAGGCCAGAGACTCGGCTTCATGAGTTCCGGCGGTGCTCGGTTTGTGGTAATGTAAACTATTGCTCACGAGGTTGCCAAGCTCTGGACTGGAAATTGCAGCACAAGACGGAATGTGCGCCGTTTGACCGGTGGCTGATCGAGGACGACGACCTCGAAGACGACGACGACGACGGCGTAAACAGAATAGAGCAGTTCGGAGACGGTGTGAATGTGGAAACGGAATGATATTTGATTATTAAAGGCAAAGATTTCTCTTGTTGTTTGACATCACTTTTACCCTTTTAAAATTCTTTTTATTTTATTTTATTTTTTACTTCCTCCTCTTTTTAACATGAATATCCCACGTGGAAAAGATTAAAATATT

mRNA sequence

ACTTCATGCTCTAACTACGATCCAAATCTGGCTTCCTATAATCCTCCATTAACGGACCTCAATCGTTTGCAGTCCTTTCATGACGGTTCCATTTTCAAGGTGAAGGCCACAACGACGACCAATCTATTACACTCTGGAATGGTGTGCAACAAAAGGAGGAGAACTTCGACCACCACCGCCGCCGGGATTCATGATCTCTTCGACGATTTGCCGGATGATTTACTCGTCCTCCTCCTCGGCAAACTTAGCGCCAACGCTTCTTCTCCTTCAGATCTCGTCAATGTTATGTTGACATGTAAGAGGTTCAATCGATTGGCTCTGCATCCGATGGTGCTATCGAAAGCTGGACCTAAAGCATTTGAAATCCGAATTAAAAACTGGTGCGAATCGACTCATCGATTCCTGAAATTGTGCGTTTCTGCCGGTAATCTTGAAGCGTGCTACACTCTAGGAATGGTCGAATTTTATTGTATGAAGAACAGAGGAAATGGAGCTTCGTTAATGGCGAAGGCCGCGATTAAATCTCATCCGTTGGCGCTTTACTCCCTCGCAATCGTACAGTTTAATGGAAGCGGTGGTTCAAAGAGCGACAAGAATCTTCGTGCAGGTGTGGCTTTGTGCGGACGAGCCGCTTGTCTCGGTCATATCGATGCGCTTCGCGAACTAGGTCACTGTCTTCAAGACGGTTACGGCGTCGCTCAAAACGCGTCCGAGGGACGTCGTCTCTTAATCGAAGCCAACGCGCGTGAGCTCGCGTCGATAACAAACTCCTCTCTCCGCCGTCTCAACTGCTCCGTCGACCGCCCTACCACGACGGATTCCAGCGGATCGCTTCTTAGTGATTTCGGCTACAACATTCCGGCGCCGGAGGTTCATCCGGCGAATCAATTTTTAAGAGATTGGTTCACTTCTGGCCGTGGATTTATCGCTGAAGGTTTGAGACTCTGCTCGAATAGTGGCTGTGGAAGGCCAGAGACTCGGCTTCATGAGTTCCGGCGGTGCTCGGTTTGTGGTAATGTAAACTATTGCTCACGAGGTTGCCAAGCTCTGGACTGGAAATTGCAGCACAAGACGGAATGTGCGCCGTTTGACCGGTGGCTGATCGAGGACGACGACCTCGAAGACGACGACGACGACGGCGTAAACAGAATAGAGCAGTTCGGAGACGGTGTGAATGTGGAAACGGAATGATATTTGATTATTAAAGGCAAAGATTTCTCTTGTTGTTTGACATCACTTTTACCCTTTTAAAATTCTTTTTATTTTATTTTATTTTTTACTTCCTCCTCTTTTTAACATGAATATCCCACGTGGAAAAGATTAAAATATT

Coding sequence (CDS)

ATGGTGTGCAACAAAAGGAGGAGAACTTCGACCACCACCGCCGCCGGGATTCATGATCTCTTCGACGATTTGCCGGATGATTTACTCGTCCTCCTCCTCGGCAAACTTAGCGCCAACGCTTCTTCTCCTTCAGATCTCGTCAATGTTATGTTGACATGTAAGAGGTTCAATCGATTGGCTCTGCATCCGATGGTGCTATCGAAAGCTGGACCTAAAGCATTTGAAATCCGAATTAAAAACTGGTGCGAATCGACTCATCGATTCCTGAAATTGTGCGTTTCTGCCGGTAATCTTGAAGCGTGCTACACTCTAGGAATGGTCGAATTTTATTGTATGAAGAACAGAGGAAATGGAGCTTCGTTAATGGCGAAGGCCGCGATTAAATCTCATCCGTTGGCGCTTTACTCCCTCGCAATCGTACAGTTTAATGGAAGCGGTGGTTCAAAGAGCGACAAGAATCTTCGTGCAGGTGTGGCTTTGTGCGGACGAGCCGCTTGTCTCGGTCATATCGATGCGCTTCGCGAACTAGGTCACTGTCTTCAAGACGGTTACGGCGTCGCTCAAAACGCGTCCGAGGGACGTCGTCTCTTAATCGAAGCCAACGCGCGTGAGCTCGCGTCGATAACAAACTCCTCTCTCCGCCGTCTCAACTGCTCCGTCGACCGCCCTACCACGACGGATTCCAGCGGATCGCTTCTTAGTGATTTCGGCTACAACATTCCGGCGCCGGAGGTTCATCCGGCGAATCAATTTTTAAGAGATTGGTTCACTTCTGGCCGTGGATTTATCGCTGAAGGTTTGAGACTCTGCTCGAATAGTGGCTGTGGAAGGCCAGAGACTCGGCTTCATGAGTTCCGGCGGTGCTCGGTTTGTGGTAATGTAAACTATTGCTCACGAGGTTGCCAAGCTCTGGACTGGAAATTGCAGCACAAGACGGAATGTGCGCCGTTTGACCGGTGGCTGATCGAGGACGACGACCTCGAAGACGACGACGACGACGGCGTAAACAGAATAGAGCAGTTCGGAGACGGTGTGAATGTGGAAACGGAATGA

Protein sequence

MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLALHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGASLMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNIPAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQHKTECAPFDRWLIEDDDLEDDDDDGVNRIEQFGDGVNVETE

Homology

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BLAST of Carg06796 vs. NCBI nr
Match: XP_022955215.1 (F-box protein At5g50450 [Cucurbita moschata] >XP_023542705.1 F-box protein At5g50450 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 706.4 bits (1822), Expect = 4.7e-200
Identity = 349/350 (99.71%), Postives = 350/350 (100.00%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGN+EACYTLGMVEFYCMKNRGNGAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNVEACYTLGMVEFYCMKNRGNGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 351
           CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 350

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BLAST of Carg06796 vs. NCBI nr
Match: XP_022994416.1 (F-box protein At5g50450-like [Cucurbita maxima])

HSP 1 Score: 704.9 bits (1818), Expect = 1.4e-199
Identity = 348/350 (99.43%), Postives = 350/350 (100.00%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGN+EACYTLGMVEFYCMKNRGNGAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNVEACYTLGMVEFYCMKNRGNGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRP+TTDSSGSLLSDFGYNI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPSTTDSSGSLLSDFGYNI 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 351
           CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 350

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BLAST of Carg06796 vs. NCBI nr
Match: XP_008439699.1 (PREDICTED: F-box protein At1g67340 [Cucumis melo])

HSP 1 Score: 631.3 bits (1627), Expect = 1.9e-177
Identity = 305/350 (87.14%), Postives = 322/350 (92.00%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           M+CNKRRRTST+  AGI DLFD LPDDL+V++LGKLSA ASSPSDLVNVM+TCKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAGAGISDLFDGLPDDLVVVVLGKLSATASSPSDLVNVMITCKRFNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHP+VLSKAGPKAFEI+ KNW ESTHRFLKLCVSAGN+EACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPIVLSKAGPKAFEIQTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGV QNASEGRRLLIEANARELA ITNSSLRRL+CS  R + TDS GSLLSDFG N 
Sbjct: 181 QDGYGVPQNASEGRRLLIEANARELAYITNSSLRRLHCSSHRQSATDSGGSLLSDFGCNF 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPE HPANQFLRDWF SGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEAHPANQFLRDWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 351
           CQALDWKL+HKTECAPFDRWLIED++L      GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDEELEGDEDGGVNRIEQFGDGENVESE 350

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BLAST of Carg06796 vs. NCBI nr
Match: XP_023519168.1 (F-box protein At5g50450-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 624.0 bits (1608), Expect = 3.1e-175
Identity = 304/350 (86.86%), Postives = 318/350 (90.86%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           MVCNKRRRTST+T AGI DLFD LPDDL+V++LGKLSA ASSPSD+VNVM TCKRFNRLA
Sbjct: 1   MVCNKRRRTSTSTDAGISDLFDGLPDDLVVVVLGKLSAAASSPSDIVNVMRTCKRFNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHP VL KAGPK FEI+  NW ESTHRFLKLCVSAGN+EACYTLGM+EFYC+KNRG+GAS
Sbjct: 61  LHPFVLKKAGPKVFEIQTINWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGSGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGVAQNASEGRRLLIEANARELASITNSSL RL+C  DRP  TDSS SLLSDFG   
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLLRLHCCGDRPPATDSSESLLSDFGCKF 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPETHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 351
           CQALDWKL+HKTECAPFDRWLIEDDDL       VNRIEQ GDG +VE+E
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDDDLEGDDDGDVNRIEQLGDGEDVESE 350

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BLAST of Carg06796 vs. NCBI nr
Match: XP_023001353.1 (F-box protein At1g67340-like [Cucurbita maxima])

HSP 1 Score: 622.9 bits (1605), Expect = 6.8e-175
Identity = 302/350 (86.29%), Postives = 318/350 (90.86%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           MVCNKRRRTST+T AGI DLFD LPDDL+V++LGKLSA ASSPSD+VNVM+TCKR NRLA
Sbjct: 1   MVCNKRRRTSTSTGAGISDLFDSLPDDLVVVVLGKLSAAASSPSDIVNVMITCKRLNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHP VL KAGPK FEI+  NW ES+HRFLKLCVSAGN+EACYTLGM+EFYC+KNRG+GAS
Sbjct: 61  LHPFVLKKAGPKVFEIQTINWSESSHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGSGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGVAQNASEGRRLLIEANARELASITNSSL RL+C  DRP  TDSS SLLSDFG   
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLLRLHCCGDRPPATDSSESLLSDFGCKF 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPETHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 351
           CQALDWKL+HKTECAPFDRWLIEDDDL       VNRIEQ GDG +VE+E
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDDDLEGDDDGDVNRIEQLGDGEDVESE 350

[Close]

BLAST of Carg06796 vs. TAIR10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger)

HSP 1 Score: 428.3 bits (1100), Expect = 4.5e-120
Identity = 210/338 (62.13%), Postives = 254/338 (75.15%), Query Frame = 0


Query: 19  DLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLALHPMVLSKAGPKAFEIRI 78
           DL D +PDDL++ +L KL + +  P+D +NV+LTCKR   LA++P+VLS+  PKA  ++ 
Sbjct: 42  DLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKA 101

Query: 79  KNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGASLMAKAAIKSHPLALYSLA 138
            NW E +HRFLK CV AG+LEACYTLGM+ FYC++NRGNGASLMAKAAI SH  ALYSLA
Sbjct: 102 HNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLA 161

Query: 139 IVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGYGVAQNASEGRRLLI 198
           ++QFNGSGGSK+DK+LRAGVALC RAA LGH+DALRELGHCLQDGYGV QN SEGRR L+
Sbjct: 162 VIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLV 221

Query: 199 EANARELASITNSSLRR----LNCSVDRPTTTDSSGS----LLSDFGYNIPAPEVHPANQ 258
           +ANARELA++ +S ++     L+ S   P    + G     LLSDFG N+PAPE HPAN+
Sbjct: 222 QANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPANR 281

Query: 259 FLRDWF-TSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQ 318
           FL DWF   G     +GLRLCS++GCGRPETR HEFRRCSVCG VNYCSR CQALDWKL+
Sbjct: 282 FLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLR 341

Query: 319 HKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNV 348
           HK +CAP  RWL E D        G  +I+  G+G NV
Sbjct: 342 HKMDCAPVQRWLEEGD-----GGEGNVQIDGNGNGDNV 374

[Close]

BLAST of Carg06796 vs. TAIR10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger)

HSP 1 Score: 410.6 bits (1054), Expect = 9.6e-115
Identity = 194/318 (61.01%), Postives = 244/318 (76.73%), Query Frame = 0


Query: 4   NKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLALHP 63
           NK++R        +++ F+DL DDL++ +L KL+ +ASSPSD + V+ TCKR NRL LHP
Sbjct: 5   NKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHP 64

Query: 64  MVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGASLMA 123
           +VLSKAG +   +  + W +S+H+FLKLCV+AGN++A Y+LGM+ FYC++N  +GASLMA
Sbjct: 65  LVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMA 124

Query: 124 KAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDG 183
           KAAIKSH  ALYSL+++QFNGSGGSK+DKNLRAGVALC R+A LGH+DALRELGHCLQDG
Sbjct: 125 KAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDG 184

Query: 184 YGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNIPAP 243
           YGV ++ SEGRRLLI+ANARELA    S L  L    +  T TD S          +P  
Sbjct: 185 YGVPRDVSEGRRLLIQANARELACSLRSYL-SLKSGDENETLTDLS---------VVPVQ 244

Query: 244 EVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQA 303
           E+HP N+FL++WF+SGR  +AEGLR+CS+ GCGRPETR HEFRRCSVCG VNYCSRGCQA
Sbjct: 245 EIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQA 304

Query: 304 LDWKLQHKTECAPFDRWL 322
           LDW+ +HK EC P D W+
Sbjct: 305 LDWRAKHKVECTPLDLWV 312

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BLAST of Carg06796 vs. TAIR10
Match: AT2G24640.1 (ubiquitin-specific protease 19)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-05
Identity = 23/58 (39.66%), Postives = 29/58 (50.00%), Query Frame = 0


Query: 260 RGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQHKTECAPF 318
           R F+      C  S CG+  T     ++CS C +V YCS  CQ  DWK  HK +C  F
Sbjct: 54  RDFMVSDTAEC--SVCGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKCKGF 104

[Close]

BLAST of Carg06796 vs. TAIR10
Match: AT1G17110.2 (ubiquitin-specific protease 15)

HSP 1 Score: 45.8 bits (107), Expect = 6.2e-05
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 0


Query: 287 RCSVCGNVNYCSRGCQALDWKLQHKTECAPFD 319
           RCS C +V YCS  CQ + W++ HK EC P +
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of Carg06796 vs. TAIR10
Match: AT1G74875.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 44.7 bits (104), Expect = 1.4e-04
Identity = 30/116 (25.86%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 40  ASSPSDLVNVMLTCKRFNRLALHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLE 99
           +SS S+  N+ L  K F R++    +L +       +      +  H F K C  +GNLE
Sbjct: 29  SSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKRCRKSGNLE 88

Query: 100 ACYTLGMVEFYCM----KNRGNGASLMAKAAIKSHPLALYSLAIVQFNGSGGSKSD 152
           A Y  G+V+++      + R  G   +AK A   +  A Y   ++     G +K +
Sbjct: 89  AIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILICLGGKTKQN 144

[Close]

BLAST of Carg06796 vs. Swiss-Prot
Match: sp|Q9FYF9|FB76_ARATH (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 8.1e-119
Identity = 210/338 (62.13%), Postives = 254/338 (75.15%), Query Frame = 0


Query: 19  DLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLALHPMVLSKAGPKAFEIRI 78
           DL D +PDDL++ +L KL + +  P+D +NV+LTCKR   LA++P+VLS+  PKA  ++ 
Sbjct: 42  DLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKA 101

Query: 79  KNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGASLMAKAAIKSHPLALYSLA 138
            NW E +HRFLK CV AG+LEACYTLGM+ FYC++NRGNGASLMAKAAI SH  ALYSLA
Sbjct: 102 HNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLA 161

Query: 139 IVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGYGVAQNASEGRRLLI 198
           ++QFNGSGGSK+DK+LRAGVALC RAA LGH+DALRELGHCLQDGYGV QN SEGRR L+
Sbjct: 162 VIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLV 221

Query: 199 EANARELASITNSSLRR----LNCSVDRPTTTDSSGS----LLSDFGYNIPAPEVHPANQ 258
           +ANARELA++ +S ++     L+ S   P    + G     LLSDFG N+PAPE HPAN+
Sbjct: 222 QANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPANR 281

Query: 259 FLRDWF-TSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQ 318
           FL DWF   G     +GLRLCS++GCGRPETR HEFRRCSVCG VNYCSR CQALDWKL+
Sbjct: 282 FLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLR 341

Query: 319 HKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNV 348
           HK +CAP  RWL E D        G  +I+  G+G NV
Sbjct: 342 HKMDCAPVQRWLEEGD-----GGEGNVQIDGNGNGDNV 374

[Close]

BLAST of Carg06796 vs. Swiss-Prot
Match: sp|Q9FK27|FB342_ARATH (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.7e-113
Identity = 194/318 (61.01%), Postives = 244/318 (76.73%), Query Frame = 0


Query: 4   NKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLALHP 63
           NK++R        +++ F+DL DDL++ +L KL+ +ASSPSD + V+ TCKR NRL LHP
Sbjct: 5   NKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHP 64

Query: 64  MVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGASLMA 123
           +VLSKAG +   +  + W +S+H+FLKLCV+AGN++A Y+LGM+ FYC++N  +GASLMA
Sbjct: 65  LVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMA 124

Query: 124 KAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDG 183
           KAAIKSH  ALYSL+++QFNGSGGSK+DKNLRAGVALC R+A LGH+DALRELGHCLQDG
Sbjct: 125 KAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDG 184

Query: 184 YGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNIPAP 243
           YGV ++ SEGRRLLI+ANARELA    S L  L    +  T TD S          +P  
Sbjct: 185 YGVPRDVSEGRRLLIQANARELACSLRSYL-SLKSGDENETLTDLS---------VVPVQ 244

Query: 244 EVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQA 303
           E+HP N+FL++WF+SGR  +AEGLR+CS+ GCGRPETR HEFRRCSVCG VNYCSRGCQA
Sbjct: 245 EIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQA 304

Query: 304 LDWKLQHKTECAPFDRWL 322
           LDW+ +HK EC P D W+
Sbjct: 305 LDWRAKHKVECTPLDLWV 312

[Close]

BLAST of Carg06796 vs. Swiss-Prot
Match: sp|Q2YDC9|PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-05
Identity = 23/56 (41.07%), Postives = 29/56 (51.79%), Query Frame = 0


Query: 263 IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQHKTECAPFD 319
           +  G  LC   GC  P       +RCS C   +YCS+  Q+LDW+L HK  CA  D
Sbjct: 128 LKSGAHLCRVCGCSGP-------KRCSRCHKAHYCSKEHQSLDWRLGHKQACAQTD 176

[Close]

BLAST of Carg06796 vs. Swiss-Prot
Match: sp|Q09415|SET14_CAEEL (SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=4 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-04
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 273 SGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQHKTEC 315
           S C +  T + E ++CS C  + YCS+ CQ  DWKL HK EC
Sbjct: 24  SYCNQCLTSMAELKKCSACRRLAYCSQECQRADWKL-HKVEC 64

[Close]

BLAST of Carg06796 vs. Swiss-Prot
Match: sp|P46718|PDCD2_MOUSE (Programmed cell death protein 2 OS=Mus musculus OX=10090 GN=Pdcd2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-04
Identity = 22/57 (38.60%), Postives = 27/57 (47.37%), Query Frame = 0


Query: 263 IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLQHKTECAPFDR 320
           +  G  LC   GC  P T       CS C   +YCS+  Q LDW+L HK  C   D+
Sbjct: 127 LKSGAHLCRVCGCLAPMT-------CSRCKQAHYCSKEHQTLDWRLGHKQACTQSDK 176

[Close]

BLAST of Carg06796 vs. TrEMBL
Match: tr|A0A1S3AZD5|A0A1S3AZD5_CUCME (F-box protein At1g67340 OS=Cucumis melo OX=3656 GN=LOC103484413 PE=4 SV=1)

HSP 1 Score: 631.3 bits (1627), Expect = 1.3e-177
Identity = 305/350 (87.14%), Postives = 322/350 (92.00%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           M+CNKRRRTST+  AGI DLFD LPDDL+V++LGKLSA ASSPSDLVNVM+TCKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAGAGISDLFDGLPDDLVVVVLGKLSATASSPSDLVNVMITCKRFNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHP+VLSKAGPKAFEI+ KNW ESTHRFLKLCVSAGN+EACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPIVLSKAGPKAFEIQTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGV QNASEGRRLLIEANARELA ITNSSLRRL+CS  R + TDS GSLLSDFG N 
Sbjct: 181 QDGYGVPQNASEGRRLLIEANARELAYITNSSLRRLHCSSHRQSATDSGGSLLSDFGCNF 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPE HPANQFLRDWF SGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEAHPANQFLRDWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNVETE 351
           CQALDWKL+HKTECAPFDRWLIED++L      GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDEELEGDEDGGVNRIEQFGDGENVESE 350

[Close]

BLAST of Carg06796 vs. TrEMBL
Match: tr|A0A0A0LTV0|A0A0A0LTV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050480 PE=4 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 3.8e-174
Identity = 302/351 (86.04%), Postives = 319/351 (90.88%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           M+CNKRRRTST+ A GI DLFD LPDDL+V++LGKLSA ASSP DLVNVM+TCKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAATGISDLFDGLPDDLVVVVLGKLSATASSPLDLVNVMITCKRFNRLA 60

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LHP+VLSKAGPKAFEI+ KNW ESTHRFLKLCVSAGN+EACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPIVLSKAGPKAFEIQTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGAS 120

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240
           QDGYGV QN SEGRRLLIEANARELA ITNSSLRRL+CS  R + TDS GSLLSDFG N 
Sbjct: 181 QDGYGVPQNVSEGRRLLIEANARELAYITNSSLRRLHCSRHRQSATDSGGSLLSDFGCNF 240

Query: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300
           PAPE HPANQFLRDWF SGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEAHPANQFLRDWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 301 CQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXG-VNRIEQFGDGVNVETE 351
           CQALDWKL+HKTECAPFDRWLIE+D+L      G VNRIEQF DG NVE+E
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEEDELEGDDDGGVVNRIEQFDDGENVESE 351

[Close]

BLAST of Carg06796 vs. TrEMBL
Match: tr|A0A2I4F0L2|A0A2I4F0L2_9ROSI (F-box protein At1g67340 OS=Juglans regia OX=51240 GN=LOC108994425 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.0e-130
Identity = 230/324 (70.99%), Postives = 263/324 (81.17%), Query Frame = 0


Query: 5   KRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLALHPM 64
           KR RT  TT +G  D FDDLP+DLLV +L KLS++ASSPSDLVNV++TCKR NRL LHP+
Sbjct: 4   KRPRTPATTLSGKSDFFDDLPEDLLVFILCKLSSSASSPSDLVNVLITCKRLNRLGLHPL 63

Query: 65  VLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGASLMAK 124
           VLSKAG KAF I+ KNW ES  RFLKLC +AGN+EA YTLGM+ FYC++NRG+GASLMAK
Sbjct: 64  VLSKAGAKAFAIKAKNWSESADRFLKLCANAGNVEASYTLGMIRFYCLQNRGSGASLMAK 123

Query: 125 AAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCLQDGY 184
           AAIKSH  ALYSLA++QFNGSGGSKS+KNL+AGVALC RAA LGH+DALRELGHC QDGY
Sbjct: 124 AAIKSHAPALYSLAVIQFNGSGGSKSEKNLQAGVALCARAAFLGHVDALRELGHCFQDGY 183

Query: 185 GVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDR---PTTTDSSG--SLLSDFGYN 244
           G  QN ++GRR L++ANARELAS+    LR L+ S  R   P     SG   LLSDFG N
Sbjct: 184 GARQNIAQGRRFLVQANARELASV----LRYLSSSAWRLPNPPCVSGSGCEGLLSDFGCN 243

Query: 245 IPAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSR 304
           +PAPE HP N+FLRDWF SG G ++EGLRLCS+ GCGRPETR HEFRRCSVCG VNYCSR
Sbjct: 244 VPAPEAHPVNRFLRDWFESGTGGLSEGLRLCSHGGCGRPETRAHEFRRCSVCGMVNYCSR 303

Query: 305 GCQALDWKLQHKTECAPFDRWLIE 324
           GCQALDWKL+HK EC P +RWL E
Sbjct: 304 GCQALDWKLRHKAECMPIERWLDE 323

[Close]

BLAST of Carg06796 vs. TrEMBL
Match: tr|A0A2I4F3U8|A0A2I4F3U8_9ROSI (F-box protein At5g50450-like OS=Juglans regia OX=51240 GN=LOC108995229 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 1.6e-127
Identity = 233/361 (64.54%), Postives = 274/361 (75.90%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIH-DLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRL 60
           M+  K+ RT TTT+   + DLFD LPDDL+V +L KLS++ASSPSDL+N++ TCKR NRL
Sbjct: 1   MLFRKKPRTPTTTSLPENLDLFDGLPDDLVVFILCKLSSSASSPSDLINILFTCKRLNRL 60

Query: 61  ALHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGA 120
            LHP+VLSKAGPKAF I+ KNW ES HRFLKLC +AGN+EA YTLGM+ FYC + RG+GA
Sbjct: 61  GLHPLVLSKAGPKAFAIKAKNWSESVHRFLKLCANAGNVEASYTLGMIRFYCFQKRGSGA 120

Query: 121 SLMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHC 180
           SLMAKAA+KSH  ALYSLA++QFNGSGGSKSDKNL+AGVALC RAA LGH+DALRELGHC
Sbjct: 121 SLMAKAAMKSHAPALYSLAVIQFNGSGGSKSDKNLQAGVALCARAAFLGHVDALRELGHC 180

Query: 181 LQDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTD----SSGS---- 240
           LQDGYG  QN ++GRRLL++ANARELAS+  S   R   +  RP   D    S+GS    
Sbjct: 181 LQDGYGARQNVAQGRRLLVQANARELASVVRS---RSLLTWQRPHQNDSFPCSTGSCCEG 240

Query: 241 LLSDFGYNIPAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC 300
           LLSDFG N+PAPE HP N+FL++WF S RG + +GLRLCS+ GCGR ETR HEFRRCSVC
Sbjct: 241 LLSDFGCNVPAPEAHPVNRFLKEWFESSRGGLGQGLRLCSHGGCGRVETRSHEFRRCSVC 300

Query: 301 GNVNYCSRGCQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVN--VET 351
           G VNYCSRGCQALDWK +HK EC P +RWL E           V  ++   DGV   VE 
Sbjct: 301 GKVNYCSRGCQALDWKQRHKLECMPMERWLDE-----------VGAVDNVADGVGGMVEV 347

[Close]

BLAST of Carg06796 vs. TrEMBL
Match: tr|M5WT99|M5WT99_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G151000 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.0e-126
Identity = 224/349 (64.18%), Postives = 271/349 (77.65%), Query Frame = 0


Query: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60
           M  ++++  S+       D FD LPDDL+V +L KLS++ASSPSDL+N+++TCKR NRL 
Sbjct: 4   MTLHRKKLKSSRRTTAKSDFFDGLPDDLVVFILCKLSSSASSPSDLINILITCKRLNRLG 63

Query: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120
           LH +VLSKAGPKAF IR KNW +S HRFLK CVSAGN+EACYTLGM+ FY ++NRG+GAS
Sbjct: 64  LHSVVLSKAGPKAFAIRAKNWSDSAHRFLKQCVSAGNIEACYTLGMIRFYSLQNRGSGAS 123

Query: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180
           LMAKAA++SH  ALYSLA+VQFNGSGGSK +K+LRAGVALC RAA LGH+DALRELGHCL
Sbjct: 124 LMAKAAMRSHAPALYSLAVVQFNGSGGSKKEKDLRAGVALCARAASLGHVDALRELGHCL 183

Query: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLN--CSVDRPTTTDSSGSLLSDFGY 240
           QDGYGV QN +EGRRLL++ANARELAS+  S+  R +    +    T   S  LLSDFG 
Sbjct: 184 QDGYGVKQNVAEGRRLLVQANARELASVLRSATWRSHHYQHLYACLTGLVSCPLLSDFGC 243

Query: 241 NIPAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCS 300
           N+PAPE+HPAN+FL++WF SGR    +G+RLCS+ GCGRPETR HEFRRCSVCG VNYCS
Sbjct: 244 NVPAPELHPANRFLKEWFGSGRAISGQGMRLCSHVGCGRPETRPHEFRRCSVCGTVNYCS 303

Query: 301 RGCQALDWKLQHKTECAPFDRWLIEDDDLXXXXXXGVNRIEQFGDGVNV 348
           RGCQALDWKL+HK +C P +RWL  D +L          + + GDG NV
Sbjct: 304 RGCQALDWKLRHKVKCKPIERWLGVDGEL--------GGLVEGGDGENV 344

The following BLAST results are available for this feature:

BLAST of Carg06796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955215.1	4.7e-200	99.71	F-box protein At5g50450 [Cucurbita moschata] >XP_023542705.1 F-box protein At5g5...	[more]
XP_022994416.1	1.4e-199	99.43	F-box protein At5g50450-like [Cucurbita maxima]	[more]
XP_008439699.1	1.9e-177	87.14	PREDICTED: F-box protein At1g67340 [Cucumis melo]	[more]
XP_023519168.1	3.1e-175	86.86	F-box protein At5g50450-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001353.1	6.8e-175	86.29	F-box protein At1g67340-like [Cucurbita maxima]	[more]

BLAST of Carg06796 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67340.1	4.5e-120	62.13	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	9.6e-115	61.01	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT2G24640.1	2.1e-05	39.66	ubiquitin-specific protease 19	[more]
AT1G17110.2	6.2e-05	50.00	ubiquitin-specific protease 15	[more]
AT1G74875.1	1.4e-04	25.86	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg06796 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FYF9\|FB76_ARATH	8.1e-119	62.13	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
sp\|Q9FK27\|FB342_ARATH	1.7e-113	61.01	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]
sp\|Q2YDC9\|PDCD2_BOVIN	3.5e-05	41.07	Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1	[more]
sp\|Q09415\|SET14_CAEEL	3.0e-04	47.62	SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=...	[more]
sp\|P46718\|PDCD2_MOUSE	3.9e-04	38.60	Programmed cell death protein 2 OS=Mus musculus OX=10090 GN=Pdcd2 PE=2 SV=2	[more]

BLAST of Carg06796 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZD5\|A0A1S3AZD5_CUCME	1.3e-177	87.14	F-box protein At1g67340 OS=Cucumis melo OX=3656 GN=LOC103484413 PE=4 SV=1	[more]
tr\|A0A0A0LTV0\|A0A0A0LTV0_CUCSA	3.8e-174	86.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050480 PE=4 SV=1	[more]
tr\|A0A2I4F0L2\|A0A2I4F0L2_9ROSI	2.0e-130	70.99	F-box protein At1g67340 OS=Juglans regia OX=51240 GN=LOC108994425 PE=4 SV=1	[more]
tr\|A0A2I4F3U8\|A0A2I4F3U8_9ROSI	1.6e-127	64.54	F-box protein At5g50450-like OS=Juglans regia OX=51240 GN=LOC108995229 PE=4 SV=1	[more]
tr\|M5WT99\|M5WT99_PRUPE	3.0e-126	64.18	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G151000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR002893	Znf_MYND
IPR001810	F-box_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06796-RA	Carg06796-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 79..216 e-value: 2.4E-14 score: 55.1
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 22..63 e-value: 2.4E-6 score: 27.2
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 274..314 e-value: 3.0E-8 score: 33.5
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 272..314 score: 11.205
None	No IPR available	GENE3D	G3DSA:3.30.60.180		coord: 265..316 e-value: 6.7E-11 score: 43.8
None	No IPR available	PANTHER	PTHR12298	PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED	coord: 4..341
None	No IPR available	PANTHER	PTHR12298:SF37	SUBFAMILY NOT NAMED	coord: 4..341
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 86..200
None	No IPR available	SUPERFAMILY	SSF144232	HIT/MYND zinc finger-like	coord: 270..319
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 15..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06796	Cla002619	Watermelon (97103) v1	carwmB0489
Carg06796	Csa1G050480	Cucumber (Chinese Long) v2	carcuB0523
Carg06796	MELO3C002360	Melon (DHL92) v3.5.1	carmeB0499
Carg06796	ClCG03G003750	Watermelon (Charleston Gray)	carwcgB0480
Carg06796	CSPI01G09530	Wild cucumber (PI 183967)	carcpiB0531
Carg06796	Cucsa.392080	Cucumber (Gy14) v1	carcgyB0571
Carg06796	CmaCh18G003180	Cucurbita maxima (Rimu)	carcmaB0693
Carg06796	CmaCh13G008040	Cucurbita maxima (Rimu)	carcmaB0689
Carg06796	CmoCh18G002180	Cucurbita moschata (Rifu)	carcmoB0673
Carg06796	CmoCh13G008360	Cucurbita moschata (Rifu)	carcmoB0670
Carg06796	Lsi02G005030	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06796	Cp4.1LG09g09610	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06796	Cp4.1LG20g03040	Cucurbita pepo (Zucchini)	carcpeB0698
Carg06796	CsGy1G009560	Cucumber (Gy14) v2	carcgybB0500
Carg06796	MELO3C002360.2	Melon (DHL92) v3.6.1	carmedB0504
Carg06796	CsaV3_1G009640	Cucumber (Chinese Long) v3	carcucB0529
Carg06796	Cla97C03G054890	Watermelon (97103) v2	carwmbB0517
Carg06796	Cla97C06G127620	Watermelon (97103) v2	carwmbB0521
Carg06796	Bhi08G001227	Wax gourd	carwgoB0602

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06796	Carg10281	Silver-seed gourd	carcarB390
Carg06796	Carg07602	Silver-seed gourd	carcarB481

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06796	Watermelon (Charleston Gray)	carwcgB0483
Carg06796	Watermelon (97103) v1	carwmB0495
Carg06796	Cucurbita maxima (Rimu)	carcmaB0686
Carg06796	Cucurbita maxima (Rimu)	carcmaB0688
Carg06796	Cucurbita moschata (Rifu)	carcmoB0668
Carg06796	Cucurbita moschata (Rifu)	carcmoB0669
Carg06796	Cucurbita pepo (Zucchini)	carcpeB0695
Carg06796	Cucurbita pepo (Zucchini)	carcpeB0699