Carg06676 (gene) Silver-seed gourd

Overview
NameCarg06676
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription factor like
LocationCucurbita_argyrosperma_scaffold_012 : 346488 .. 346846 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCGCCATTCTGATAAGGTATGCACGAGCGTTCAAATTTAACATGGTATTAGAACGAGATTCGAGATAGACCCATTATGACTTTTTTTCTTCTTCTTTTGTAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGGTGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA

mRNA sequence

ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCGCCATTCTGATAAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGGTGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA

Coding sequence (CDS)

ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCGCCATTCTGATAAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGGTGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA

Protein sequence

MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
Homology
[Close]
BLAST of Carg06676 vs. NCBI nr
Match: XP_022955105.1 (transcription factor PRE3-like [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 7.7e-38
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. NCBI nr
Match: XP_023542851.1 (transcription factor PRE3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 1.0e-37
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSGRSRSRQSSA+RISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGRSRSRQSSAIRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. NCBI nr
Match: XP_004152438.1 (PREDICTED: transcription factor PRE3 [Cucumis sativus] >KGN64245.1 hypothetical protein Csa_1G045430 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. NCBI nr
Match: XP_016899225.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.2e-37
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. NCBI nr
Match: XP_022994683.1 (transcription factor PRE3-like [Cucurbita maxima])

HSP 1 Score: 162.5 bits (410), Expect = 6.5e-37
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSG SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGISRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. TAIR10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-30
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 1  MSG-RSRSRQSSAV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRS 60
          MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          LHREVDDLSERLSELL  SDTAQAA+IRSLLTQ
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]
BLAST of Carg06676 vs. TAIR10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-28
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MSGR--SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL 60
          MS R  SRSRQS + RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLVTSD--TAQAAIIRSLL 89
          HREVDDLS+RLSELL ++D  +A+AAIIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]
BLAST of Carg06676 vs. TAIR10
Match: AT3G47710.1 (BANQUO 3)

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-24
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 2  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHR 61
          S +SRSRQ+ A  I+DEQI DLV +L +LLPE+  NR S KVSA++VLQETC+YIR+L +
Sbjct: 3  SRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSK 62

Query: 62 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Sbjct: 63 EVDDLSERLSQLLESTDSAQAALIRSLLMQ 92

[Close]
BLAST of Carg06676 vs. TAIR10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-23
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLH 60
          MS R   + S+A RISD+Q+ DLV KL+Q LPEI   R SDKVSA+KVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSELL--VTSDTAQAAIIRSLL 89
          REVD+LS+RLS+LL  V  D+ +AA+IRSLL
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLL 91

[Close]
BLAST of Carg06676 vs. TAIR10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLH 60
          MS R   + SSA RISD Q+ DLV KL+Q+LPEI + R SDK SA+KVLQETCNYIR+L+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSELL--VTSDTAQAAIIRSLL 89
          REVD+LSERLS+LL  V  D+ +AA+IRSLL
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLL 91

[Close]
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|Q9CA64|PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.6e-29
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 1  MSG-RSRSRQSSAV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRS 60
          MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          LHREVDDLSERLSELL  SDTAQAA+IRSLLTQ
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|Q8GW32|PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.2e-27
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MSGR--SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSL 60
          MS R  SRSRQS + RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLVTSD--TAQAAIIRSLL 89
          HREVDDLS+RLSELL ++D  +A+AAIIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|B8APB5|ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-26
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 2  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHRE 61
          S RSRSRQS + RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+E
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQE 62

Query: 62 VDDLSERLSELLVTSD--TAQAAIIRSLL 89
          VDDLSERLSELL TSD  +AQAAIIRSLL
Sbjct: 63 VDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|Q0DUR2|ILI6_ORYSJ (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-26
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 2  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHRE 61
          S RSRSRQS + RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+E
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQE 62

Query: 62 VDDLSERLSELLVTSD--TAQAAIIRSLL 89
          VDDLSERLSELL TSD  +AQAAIIRSLL
Sbjct: 63 VDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|A2Z730|ILI7_ORYSI (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.8e-26
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MS RSRSR SSA RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC+YIRSLHR
Sbjct: 1  MSSRSRSRASSAARITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSD--TAQAAIIRSLL 89
          EVDDLSERL+ELL  +D  TAQAA+IR LL
Sbjct: 61 EVDDLSERLAELLAAADVSTAQAAVIRGLL 90

[Close]
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A0A0LQQ1|A0A0A0LQQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A1S4DU40|A0A1S4DU40_CUCME (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60
          MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHR 60

Query: 61 EVDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          EVDDLSERLSELL TSDTAQAAIIRSLLTQ
Sbjct: 61 EVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A1U8NT88|A0A1U8NT88_GOSHI (transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107950849 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0 

Query: 2  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHRE 61
          S RSRSRQSS  RI+D+QI DLV KLQQLLPE+RNRHSDKVSAAKVLQETCNYIRSLHRE
Sbjct: 3  SRRSRSRQSSGSRITDDQIYDLVSKLQQLLPEVRNRHSDKVSAAKVLQETCNYIRSLHRE 62

Query: 62 VDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          VDDLSERLSELL T+D+AQAA+IRSLL Q
Sbjct: 63 VDDLSERLSELLATTDSAQAAVIRSLLMQ 91

[Close]
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A0D2QI20|A0A0D2QI20_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G095400 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0 

Query: 2  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHRE 61
          S RSRSRQSS  RI+D+QI DLV KLQQLLPE+RNRHSDKVSAAKVLQETCNYIRSLHRE
Sbjct: 3  SRRSRSRQSSGSRITDDQIYDLVSKLQQLLPEVRNRHSDKVSAAKVLQETCNYIRSLHRE 62

Query: 62 VDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          VDDLSERLSELL T+D+AQAA+IRSLL Q
Sbjct: 63 VDDLSERLSELLATTDSAQAAVIRSLLMQ 91

[Close]
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A2P5SRU3|A0A2P5SRU3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01220 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0 

Query: 2  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHRE 61
          S RSRSRQSS  RI+D+QI DLV KLQQLLPE+RNRHSDKVSAAKVLQETCNYIRSLHRE
Sbjct: 3  SRRSRSRQSSGSRITDDQIYDLVSKLQQLLPEVRNRHSDKVSAAKVLQETCNYIRSLHRE 62

Query: 62 VDDLSERLSELLVTSDTAQAAIIRSLLTQ 91
          VDDLSERLSELL T+D+AQAA+IRSLL Q
Sbjct: 63 VDDLSERLSELLATTDSAQAAVIRSLLMQ 91

The following BLAST results are available for this feature:
BLAST of Carg06676 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955105.17.7e-3898.89transcription factor PRE3-like [Cucurbita moschata][more]
XP_023542851.11.0e-3797.78transcription factor PRE3-like [Cucurbita pepo subsp. pepo][more]
XP_004152438.11.7e-3797.78PREDICTED: transcription factor PRE3 [Cucumis sativus] >KGN64245.1 hypothetical ... [more]
XP_016899225.12.2e-3797.78PREDICTED: transcription factor PRE3-like [Cucumis melo][more]
XP_022994683.16.5e-3797.78transcription factor PRE3-like [Cucurbita maxima][more]
BLAST of Carg06676 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74500.14.2e-3079.57activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
AT1G26945.15.1e-2873.91basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G47710.15.9e-2466.67BANQUO 3[more]
AT3G28857.16.5e-2365.93basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT5G39860.11.1e-2265.93basic helix-loop-helix (bHLH) DNA-binding family protein[more]
BLAST of Carg06676 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9CA64|PRE3_ARATH7.6e-2979.57Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1[more]
sp|Q8GW32|PRE6_ARATH9.2e-2773.91Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1[more]
sp|B8APB5|ILI6_ORYSI2.7e-2675.28Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV... [more]
sp|Q0DUR2|ILI6_ORYSJ2.7e-2675.28Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ... [more]
sp|A2Z730|ILI7_ORYSI7.8e-2673.33Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV... [more]
BLAST of Carg06676 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQQ1|A0A0A0LQQ1_CUCSA1.1e-3797.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1[more]
tr|A0A1S4DU40|A0A1S4DU40_CUCME1.5e-3797.78transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1[more]
tr|A0A1U8NT88|A0A1U8NT88_GOSHI6.0e-3185.39transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107950849 PE=... [more]
tr|A0A0D2QI20|A0A0D2QI20_GOSRA6.0e-3185.39Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G095400 PE=4 ... [more]
tr|A0A2P5SRU3|A0A2P5SRU3_GOSBA6.0e-3185.39Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01220 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06676-RACarg06676-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
NoneNo IPR availablePANTHERPTHR12565:SF172TRANSCRIPTION FACTOR PRE3-RELATEDcoord: 1..90
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..90
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 6..86
e-value: 2.1E-9
score: 39.4
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 18..76
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 19..58
e-value: 6.9E-6
score: 25.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 4..58
score: 11.261

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06676Cla019121Watermelon (97103) v1carwmB0494
Carg06676Csa1G045430Cucumber (Chinese Long) v2carcuB0523
Carg06676MELO3C017164Melon (DHL92) v3.5.1carmeB0500
Carg06676MELO3C002197Melon (DHL92) v3.5.1carmeB0499
Carg06676ClCG06G016290Watermelon (Charleston Gray)carwcgB0482
Carg06676ClCG01G014490Watermelon (Charleston Gray)carwcgB0479
Carg06676CSPI01G07860Wild cucumber (PI 183967)carcpiB0531
Carg06676CSPI01G02180Wild cucumber (PI 183967)carcpiB0532
Carg06676Cucsa.097840Cucumber (Gy14) v1carcgyB0567
Carg06676Cucsa.197610Cucumber (Gy14) v1carcgyB0570
Carg06676CmaCh18G001210Cucurbita maxima (Rimu)carcmaB0692
Carg06676CmaCh10G001830Cucurbita maxima (Rimu)carcmaB0686
Carg06676CmaCh11G001520Cucurbita maxima (Rimu)carcmaB0687
Carg06676Lsi02G003030Bottle gourd (USVL1VR-Ls)carlsiB447
Carg06676Lsi06G014750Bottle gourd (USVL1VR-Ls)carlsiB448
Carg06676Cp4.1LG09g10720Cucurbita pepo (Zucchini)carcpeB0694
Carg06676Cp4.1LG04g15040Cucurbita pepo (Zucchini)carcpeB0699
Carg06676Cp4.1LG18g07850Cucurbita pepo (Zucchini)carcpeB0695
Carg06676CsGy1G002250Cucumber (Gy14) v2carcgybB0501
Carg06676CsGy1G007680Cucumber (Gy14) v2carcgybB0500
Carg06676MELO3C002197.2Melon (DHL92) v3.6.1carmedB0504
Carg06676MELO3C017164.2Melon (DHL92) v3.6.1carmedB0505
Carg06676CsaV3_1G002240Cucumber (Chinese Long) v3carcucB0530
Carg06676CsaV3_1G007820Cucumber (Chinese Long) v3carcucB0529
Carg06676Cla97C01G013520Watermelon (97103) v2carwmbB0516
Carg06676Cla97C05G106500Watermelon (97103) v2carwmbB0519
Carg06676Cla97C06G125890Watermelon (97103) v2carwmbB0520
Carg06676Cla97C09G179720Watermelon (97103) v2carwmbB0522
Carg06676Bhi08G001155Wax gourdcarwgoB0600
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06676Carg02256Silver-seed gourdcarcarB300
Carg06676Carg10405Silver-seed gourdcarcarB389
Carg06676Carg18179Silver-seed gourdcarcarB478
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06676Silver-seed gourdcarcarB482
Carg06676Cucurbita maxima (Rimu)carcmaB0690
Carg06676Cucurbita moschata (Rifu)carcmoB0671
Carg06676Cucurbita moschata (Rifu)carcmoB0673
Carg06676Cucurbita pepo (Zucchini)carcpeB0696
Carg06676Watermelon (97103) v1carwmB0490