Carg06676 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCGCCATTCTGATAAGGTATGCACGAGCGTTCAAATTTAACATGGTATTAGAACGAGATTCGAGATAGACCCATTATGACTTTTTTTCTTCTTCTTTTGTAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGGTGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCGCCATTCTGATAAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGGTGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCGCCATTCTGATAAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGGTGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
BLAST of Carg06676 vs. NCBI nr
Match: XP_022955105.1 (transcription factor PRE3-like [Cucurbita moschata]) HSP 1 Score: 165.6 bits (418), Expect = 7.7e-38 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Carg06676 vs. NCBI nr
Match: XP_023542851.1 (transcription factor PRE3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 165.2 bits (417), Expect = 1.0e-37 Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Carg06676 vs. NCBI nr
Match: XP_004152438.1 (PREDICTED: transcription factor PRE3 [Cucumis sativus] >KGN64245.1 hypothetical protein Csa_1G045430 [Cucumis sativus]) HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37 Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Carg06676 vs. NCBI nr
Match: XP_016899225.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo]) HSP 1 Score: 164.1 bits (414), Expect = 2.2e-37 Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Carg06676 vs. NCBI nr
Match: XP_022994683.1 (transcription factor PRE3-like [Cucurbita maxima]) HSP 1 Score: 162.5 bits (410), Expect = 6.5e-37 Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Carg06676 vs. TAIR10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1) HSP 1 Score: 127.5 bits (319), Expect = 4.2e-30 Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 0
BLAST of Carg06676 vs. TAIR10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 120.6 bits (301), Expect = 5.1e-28 Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Carg06676 vs. TAIR10
Match: AT3G47710.1 (BANQUO 3) HSP 1 Score: 107.1 bits (266), Expect = 5.9e-24 Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 0
BLAST of Carg06676 vs. TAIR10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein) HSP 1 Score: 103.6 bits (257), Expect = 6.5e-23 Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 0
BLAST of Carg06676 vs. TAIR10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein) HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22 Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 0
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|Q9CA64|PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 7.6e-29 Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 0
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|Q8GW32|PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 9.2e-27 Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|B8APB5|ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 2.7e-26 Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|Q0DUR2|ILI6_ORYSJ (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 2.7e-26 Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0
BLAST of Carg06676 vs. Swiss-Prot
Match: sp|A2Z730|ILI7_ORYSI (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 7.8e-26 Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 0
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A0A0LQQ1|A0A0A0LQQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37 Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A1S4DU40|A0A1S4DU40_CUCME (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37 Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A1U8NT88|A0A1U8NT88_GOSHI (transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107950849 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31 Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A0D2QI20|A0A0D2QI20_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G095400 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31 Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0
BLAST of Carg06676 vs. TrEMBL
Match: tr|A0A2P5SRU3|A0A2P5SRU3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01220 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 6.0e-31 Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|