CsaV3_1G007820 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G007820
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTranscription factor
Locationchr1 : 4948692 .. 4949362 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGCCTTCTTCTTCTTCTTCCCTCTTCACATTCTCCAAACTCTTCATCTTTTTCCTCAATACCCCTTTTTAGATTCCATTTTCATATAGCTCAACAGAATTCAAAATCCCATCCAAAAAAACATATATTATTGTTATTATATATATATATATATTATATCAATATGTCTGGTAGATCTCGTTCAAGACAATCAAGTAGTGTAAGAATCAGTGACGAGCAAATCACTGATCTTGTTCACAAATTGCAGCAACTCCTGCCTGAGATTCGTAATCGTCACTCAGACAAGGTGCATGTATTATCAAAATCTAAAAACTTAATGTGGTATTGAGCTTACCGCTTGAGTTTTTCTTTTTTTTCTTCTGTTGAGGTTTATTGAAAGATTTTTCCTCTTCTTAATTGTGTATAGGTTTCAGCAGCAAAGGTCTTGCAAGAGACATGCAATTACATTAGAAGCTTACATAGAGAAGTGGATGATCTGAGTGAAAGACTGTCGGAGTTGTTGGCCACATCGGACACAGCTCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGACTCAGTACTCATGACCATATTATATTATATATATAATCATATCATGTGGTTGTTATAAATAATAAATCGAAGTTTTCTTTGTTTAATTAGGGTTTTCTTTTCTTTTCTTTTCTT

mRNA sequence

ATGTCTGGTAGATCTCGTTCAAGACAATCAAGTAGTGTAAGAATCAGTGACGAGCAAATCACTGATCTTGTTCACAAATTGCAGCAACTCCTGCCTGAGATTCGTAATCGTCACTCAGACAAGGTGTTTCAGCAGCAAAGGTCTTGCAAGAGACATGCAATTACATTAGAAGCTTACATAGAGAAGTGGATGATCTGA

Coding sequence (CDS)

ATGTCTGGTAGATCTCGTTCAAGACAATCAAGTAGTGTAAGAATCAGTGACGAGCAAATCACTGATCTTGTTCACAAATTGCAGCAACTCCTGCCTGAGATTCGTAATCGTCACTCAGACAAGGTGTTTCAGCAGCAAAGGTCTTGCAAGAGACATGCAATTACATTAGAAGCTTACATAGAGAAGTGGATGATCTGA

Protein sequence

MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKVFQQQRSCKRHAITLEAYIEKWMI
Homology
[Close]
BLAST of CsaV3_1G007820 vs. NCBI nr
Match: XP_004152438.1 (PREDICTED: transcription factor PRE3 [Cucumis sativus] >KGN64245.1 hypothetical protein Csa_1G045430 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. NCBI nr
Match: XP_022955105.1 (transcription factor PRE3-like [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-12
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. NCBI nr
Match: XP_016899225.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. NCBI nr
Match: XP_023542851.1 (transcription factor PRE3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSGRSRSRQSS++RISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGRSRSRQSSAIRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. NCBI nr
Match: XP_022994683.1 (transcription factor PRE3-like [Cucurbita maxima])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSG SRSRQSS+VRISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGISRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. TAIR10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  MSGR--SRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MS R  SRSRQS S RISD+QI+DLV KLQ L+PE+R R SDKV
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKV 44

[Close]
BLAST of CsaV3_1G007820 vs. TAIR10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1  MSG-RSRSRQSSSV-RISDEQITDLVHKLQQLLPEIR-NRHSDKV 43
          MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R +R SDKV
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKV 45

[Close]
BLAST of CsaV3_1G007820 vs. TAIR10
Match: AT5G15160.1 (BANQUO 2)

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-05
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  MSGRSRSRQ-SSSVRISDEQITDLVHKLQQLLPEIR-NRHSDKV 43
          MS   RSRQ SSS RISD+QITDL+ KL+Q +PEIR NR S+ V
Sbjct: 1  MSSSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTV 44

[Close]
BLAST of CsaV3_1G007820 vs. TAIR10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 41.6 bits (96), Expect = 2.2e-04
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSV-RISDEQITDLVHKLQQLLPEI-RNRHSDK 42
          MS R RSRQSSS  RISD Q+ DLV KL+Q+LPEI + R SDK
Sbjct: 1  MSNR-RSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDK 42

[Close]
BLAST of CsaV3_1G007820 vs. TAIR10
Match: AT3G47710.1 (BANQUO 3)

HSP 1 Score: 40.4 bits (93), Expect = 4.9e-04
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 2  SGRSRSRQSSSVRISDEQITDLVHKLQQLLPEI-RNRHSDKV 43
          S +SRSRQ+ +  I+DEQI DLV +L +LLPE+  NR S KV
Sbjct: 3  SRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKV 44

[Close]
BLAST of CsaV3_1G007820 vs. Swiss-Prot
Match: sp|Q8GW32|PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-07
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 1  MSGR--SRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MS R  SRSRQS S RISD+QI+DLV KLQ L+PE+R R SDKV
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKV 44

[Close]
BLAST of CsaV3_1G007820 vs. Swiss-Prot
Match: sp|B8APB5|ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 2  SGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          S RSRSRQS S RI+DEQI+DLV KLQ LLPE R R +D+V
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRV 43

[Close]
BLAST of CsaV3_1G007820 vs. Swiss-Prot
Match: sp|Q0DUR2|ILI6_ORYSJ (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 2  SGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          S RSRSRQS S RI+DEQI+DLV KLQ LLPE R R +D+V
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRV 43

[Close]
BLAST of CsaV3_1G007820 vs. Swiss-Prot
Match: sp|A2Z730|ILI7_ORYSI (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MS RSRSR SS+ RI+DEQI DLV KLQ LLPE R R +D+V
Sbjct: 1  MSSRSRSRASSAARITDEQIGDLVSKLQALLPEARLRSNDRV 42

[Close]
BLAST of CsaV3_1G007820 vs. Swiss-Prot
Match: sp|Q338G6|ILI7_ORYSJ (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-06
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MS RSRSR SS+ RI+DEQI DLV KLQ LLPE R R +D+V
Sbjct: 1  MSRRSRSRASSAARITDEQIGDLVSKLQALLPEARLRSNDRV 42

[Close]
BLAST of CsaV3_1G007820 vs. TrEMBL
Match: tr|A0A0A0LQQ1|A0A0A0LQQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. TrEMBL
Match: tr|A0A1S4DU40|A0A1S4DU40_CUCME (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-12
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKV
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIRNRHSDKV 42

[Close]
BLAST of CsaV3_1G007820 vs. TrEMBL
Match: tr|A0A061FXK6|A0A061FXK6_THECC (Activation-tagged BRI1(Brassinosteroid-insensitive 1)-suppressor 1 OS=Theobroma cacao OX=3641 GN=TCM_013900 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 2  SGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          S RSRSRQS S RI+D+QI DLV KLQQLLPEIRNRHSDKV
Sbjct: 3  SRRSRSRQSGSSRITDDQIDDLVTKLQQLLPEIRNRHSDKV 43

[Close]
BLAST of CsaV3_1G007820 vs. TrEMBL
Match: tr|A0A1U8HNS0|A0A1U8HNS0_GOSHI (transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107888019 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 2  SGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          S RSRSRQSS  RI+D+QI DLV KLQQLLPE+RNRHSDKV
Sbjct: 3  SRRSRSRQSSGSRITDDQIYDLVSKLQQLLPEVRNRHSDKV 43

[Close]
BLAST of CsaV3_1G007820 vs. TrEMBL
Match: tr|A0A1U8NT88|A0A1U8NT88_GOSHI (transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107950849 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 2  SGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIRNRHSDKV 43
          S RSRSRQSS  RI+D+QI DLV KLQQLLPE+RNRHSDKV
Sbjct: 3  SRRSRSRQSSGSRITDDQIYDLVSKLQQLLPEVRNRHSDKV 43

The following BLAST results are available for this feature:
BLAST of CsaV3_1G007820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152438.12.4e-12100.00PREDICTED: transcription factor PRE3 [Cucumis sativus] >KGN64245.1 hypothetical ... [more]
XP_022955105.15.3e-1297.62transcription factor PRE3-like [Cucurbita moschata][more]
XP_016899225.16.9e-1297.62PREDICTED: transcription factor PRE3-like [Cucumis melo][more]
XP_023542851.16.9e-1295.24transcription factor PRE3-like [Cucurbita pepo subsp. pepo][more]
XP_022994683.14.5e-1195.24transcription factor PRE3-like [Cucurbita maxima][more]
BLAST of CsaV3_1G007820 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26945.13.3e-0870.45basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G74500.11.8e-0671.11activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
AT5G15160.11.5e-0565.91BANQUO 2[more]
AT5G39860.12.2e-0467.44basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT3G47710.14.9e-0457.14BANQUO 3[more]
BLAST of CsaV3_1G007820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8GW32|PRE6_ARATH6.0e-0770.45Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1[more]
sp|B8APB5|ILI6_ORYSI2.3e-0670.73Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV... [more]
sp|Q0DUR2|ILI6_ORYSJ2.3e-0670.73Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ... [more]
sp|A2Z730|ILI7_ORYSI2.3e-0669.05Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV... [more]
sp|Q338G6|ILI7_ORYSJ3.9e-0669.05Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 ... [more]
BLAST of CsaV3_1G007820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQQ1|A0A0A0LQQ1_CUCSA1.6e-12100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1[more]
tr|A0A1S4DU40|A0A1S4DU40_CUCME4.6e-1297.62transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1[more]
tr|A0A061FXK6|A0A061FXK6_THECC2.6e-0782.93Activation-tagged BRI1(Brassinosteroid-insensitive 1)-suppressor 1 OS=Theobroma ... [more]
tr|A0A1U8HNS0|A0A1U8HNS0_GOSHI3.4e-0780.49transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107888019 PE=... [more]
tr|A0A1U8NT88|A0A1U8NT88_GOSHI3.4e-0780.49transcription factor ILI6-like OS=Gossypium hirsutum OX=3635 GN=LOC107950849 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007820.1CsaV3_1G007820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G007820Carg06676Silver-seed gourdcarcucB0529
CsaV3_1G007820Bhi08G001155Wax gourdcucwgoB031
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G007820Silver-seed gourdcarcucB1048
CsaV3_1G007820Cucumber (Gy14) v2cgybcucB002
CsaV3_1G007820Cucumber (Gy14) v1cgycucB109
CsaV3_1G007820Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G007820Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G007820Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G007820Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G007820Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G007820Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G007820Wild cucumber (PI 183967)cpicucB001
CsaV3_1G007820Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G007820Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G007820Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G007820Watermelon (Charleston Gray)cucwcgB023
CsaV3_1G007820Watermelon (97103) v1cucwmB048
CsaV3_1G007820Watermelon (97103) v2cucwmbB009