Carg02256 (gene) Silver-seed gourd

Overview
NameCarg02256
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription factor
LocationCucurbita_argyrosperma_scaffold_007 : 880164 .. 880813 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACACCTTTCCTACTCCAACTGCCTCTCCATCTTCAACTCCACATAACCTTCAACCTCACTCACCAACATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTACATACTCAAAATTTCTTCTCAGGGAGGGGGCACATTTTTGTTTTCAAAACCAAAAGTCCACGCTTTAATGTCCTGGTCTAGTCAATTAAAGAATTTAACACCAACATTAGTAGCTAATTACCAAGTGTTTGTTTTTTTTTTTTTTTTTTTTGTTAAATTTAAGATTTGACTTTATTATATACATGAAATTAAGCTAATTATTAGGTTTATTAATTTCTTCAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAGAACAAGAACAAGAACAAGAACAAGAACAACGGTGTCGGGTTTGGTATTGATATATATATATATTATTATTATTTATATC

mRNA sequence

CCAACACCTTTCCTACTCCAACTGCCTCTCCATCTTCAACTCCACATAACCTTCAACCTCACTCACCAACATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAGAACAAGAACAAGAACAAGAACAAGAACAACGGTGTCGGGTTTGGTATTGATATATATATATATTATTATTATTTATATC

Coding sequence (CDS)

ATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAG

Protein sequence

MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
Homology
[Close]
BLAST of Carg02256 vs. NCBI nr
Match: XP_022939473.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_023551375.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 8.3e-40
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. NCBI nr
Match: XP_022993701.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 9.1e-39
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE
Sbjct: 1  MSTRRSRHSGPSRISDDQIIELLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. NCBI nr
Match: XP_008459306.1 (PREDICTED: transcription factor PRE6 [Cucumis melo] >XP_004151201.2 PREDICTED: transcription factor PRE6-like [Cucumis sativus] >KGN52451.1 Transcription regulator [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.5e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 6.1e-35
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR SG SRISDDQII+L+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. NCBI nr
Match: XP_023548992.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 8.0e-35
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MSTRRSR  GASRISDDQII+L+SKLR LVPEIRHRR DKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. TAIR10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-30
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNL 60
          MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +S EAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]
BLAST of Carg02256 vs. TAIR10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-30
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Carg02256 vs. TAIR10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-29
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Carg02256 vs. TAIR10
Match: AT5G15160.1 (BANQUO 2)

HSP 1 Score: 117.1 bits (292), Expect = 5.7e-27
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0 

Query: 2  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHR 61
          S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          E DDLS+RL+QLL +ID +SP+AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]
BLAST of Carg02256 vs. TAIR10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-25
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0 

Query: 1  MSTRRSR---HSGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRN 60
          MS RRSR    SG SRIS+DQI DL+ KL+QL+PE+R  RR DKVSA++VL +TCNYIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          LHREVDDLSERLS+LL+  +SD+ +AA+IRSL+ Q
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLLTQ 93

[Close]
BLAST of Carg02256 vs. Swiss-Prot
Match: sp|Q9LJX1|PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-29
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Carg02256 vs. Swiss-Prot
Match: sp|Q8GW32|PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-29
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNL 60
          MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +S EAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]
BLAST of Carg02256 vs. Swiss-Prot
Match: sp|Q9FLE9|PRE1_ARATH (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-28
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLH 60
          MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DSPEAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Carg02256 vs. Swiss-Prot
Match: sp|Q9LXG5|PRE2_ARATH (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-25
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 0 

Query: 2  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHR 61
          S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDSDSPEAAIIRSLI 90
          E DDLS+RL+QLL +ID +SP+AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]
BLAST of Carg02256 vs. Swiss-Prot
Match: sp|B8APB5|ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-24
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLH 60
          MS+R  RSR SG+SRI+D+QI DL+SKL+ L+PE R R  D+V +S+VL ETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  S +AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]
BLAST of Carg02256 vs. TrEMBL
Match: tr|A0A1S3CB29|A0A1S3CB29_CUCME (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. TrEMBL
Match: tr|A0A0A0KXB9|A0A0A0KXB9_CUCSA (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]
BLAST of Carg02256 vs. TrEMBL
Match: tr|A0A2P4II77|A0A2P4II77_QUESU (Transcription factor pre5 OS=Quercus suber OX=58331 GN=CFP56_26126 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.5e-33
Identity = 78/91 (85.71%), Postives = 86/91 (94.51%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS+RRSR SGASRI+DDQIIDL+SKLRQLVPEI++RR DKVSASKVL ETCNYIR+LHRE
Sbjct: 1  MSSRRSRQSGASRITDDQIIDLVSKLRQLVPEIQNRRSDKVSASKVLQETCNYIRSLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          VDDLSERLSQLL+TID+DS EAAIIRSLI Q
Sbjct: 61 VDDLSERLSQLLATIDADSAEAAIIRSLISQ 91

[Close]
BLAST of Carg02256 vs. TrEMBL
Match: tr|B9RUP9|B9RUP9_RICCO (Transcription regulator, putative OS=Ricinus communis OX=3988 GN=RCOM_0855340 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0 

Query: 1  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHRE 60
          MS RRSR     RI+DDQIIDL+SKLRQL+PEIR RRPDKVSASKVL ETCNYIRNLHRE
Sbjct: 1  MSGRRSRQPSVPRITDDQIIDLVSKLRQLLPEIRQRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDSDSPEAAIIRSLIM 91
          VDDLSERLSQLL+TID+DSPEAAIIRSLIM
Sbjct: 61 VDDLSERLSQLLATIDADSPEAAIIRSLIM 90

[Close]
BLAST of Carg02256 vs. TrEMBL
Match: tr|A0A1J7FQJ2|A0A1J7FQJ2_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_08320 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 1  MSTRRSRH--SGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLH 60
          MS+RRSRH  SG++RISDDQIIDL+SKLRQLVPEI HRR DKVSASKVL ETC YIRNLH
Sbjct: 1  MSSRRSRHQSSGSTRISDDQIIDLVSKLRQLVPEIHHRRSDKVSASKVLQETCTYIRNLH 60

Query: 61 REVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ 92
          REVDDLS+RLSQLL+TIDSDS EAAIIRSLI Q
Sbjct: 61 REVDDLSQRLSQLLTTIDSDSAEAAIIRSLINQ 93

The following BLAST results are available for this feature:
BLAST of Carg02256 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022939473.18.3e-4098.90transcription factor PRE6-like [Cucurbita moschata] >XP_023551375.1 transcriptio... [more]
XP_022993701.19.1e-3996.70transcription factor PRE6-like [Cucurbita maxima][more]
XP_008459306.15.5e-3692.31PREDICTED: transcription factor PRE6 [Cucumis melo] >XP_004151201.2 PREDICTED: t... [more]
XP_022134204.16.1e-3590.11transcription factor PRE6 [Momordica charantia][more]
XP_023548992.18.0e-3590.11transcription factor PRE6-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg02256 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26945.11.9e-3073.91basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G28857.11.9e-3076.09basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT5G39860.12.1e-2973.91basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT5G15160.15.7e-2771.11BANQUO 2[more]
AT1G74500.12.4e-2567.37activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
BLAST of Carg02256 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LJX1|PRE5_ARATH3.4e-2976.09Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1[more]
sp|Q8GW32|PRE6_ARATH3.4e-2973.91Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1[more]
sp|Q9FLE9|PRE1_ARATH3.8e-2873.91Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1[more]
sp|Q9LXG5|PRE2_ARATH1.0e-2571.11Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1[more]
sp|B8APB5|ILI6_ORYSI1.1e-2466.30Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV... [more]
BLAST of Carg02256 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CB29|A0A1S3CB29_CUCME3.7e-3692.31transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1[more]
tr|A0A0A0KXB9|A0A0A0KXB9_CUCSA3.7e-3692.31Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1[more]
tr|A0A2P4II77|A0A2P4II77_QUESU8.5e-3385.71Transcription factor pre5 OS=Quercus suber OX=58331 GN=CFP56_26126 PE=4 SV=1[more]
tr|B9RUP9|B9RUP9_RICCO1.4e-3285.56Transcription regulator, putative OS=Ricinus communis OX=3988 GN=RCOM_0855340 PE... [more]
tr|A0A1J7FQJ2|A0A1J7FQJ2_LUPAN2.5e-3284.95Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_08320 PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02256-RACarg02256-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..74
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..90
NoneNo IPR availablePANTHERPTHR12565:SF299SUBFAMILY NOT NAMEDcoord: 1..90
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 1..83
e-value: 8.4E-10
score: 40.7
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 3..76
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 17..57
e-value: 4.5E-5
score: 23.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 3..57
score: 11.172

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02256Cla010338Watermelon (97103) v1carwmB0246
Carg02256Cla018626Watermelon (97103) v1carwmB0257
Carg02256Csa5G635950Cucumber (Chinese Long) v2carcuB0293
Carg02256MELO3C001968Melon (DHL92) v3.5.1carmeB0265
Carg02256MELO3C021981Melon (DHL92) v3.5.1carmeB0260
Carg02256ClCG09G018330Watermelon (Charleston Gray)carwcgB0249
Carg02256ClCG04G012420Watermelon (Charleston Gray)carwcgB0256
Carg02256CSPI05G28840Wild cucumber (PI 183967)carcpiB0297
Carg02256Cucsa.158390Cucumber (Gy14) v1carcgyB0309
Carg02256Cucsa.097840Cucumber (Gy14) v1carcgyB0304
Carg02256CmaCh18G001210Cucurbita maxima (Rimu)carcmaB0364
Carg02256CmaCh15G002790Cucurbita maxima (Rimu)carcmaB0362
Carg02256CmoCh04G028870Cucurbita moschata (Rifu)carcmoB0370
Carg02256CmoCh15G002940Cucurbita moschata (Rifu)carcmoB0362
Carg02256Lsi02G014920Bottle gourd (USVL1VR-Ls)carlsiB232
Carg02256Cp4.1LG01g22860Cucurbita pepo (Zucchini)carcpeB0374
Carg02256Cp4.1LG13g08560Cucurbita pepo (Zucchini)carcpeB0366
Carg02256Cp4.1LG09g10720Cucurbita pepo (Zucchini)carcpeB0363
Carg02256CsGy5G028200Cucumber (Gy14) v2carcgybB0280
Carg02256MELO3C001968.2Melon (DHL92) v3.6.1carmedB0276
Carg02256MELO3C021981.2Melon (DHL92) v3.6.1carmedB0270
Carg02256CsaV3_5G037950Cucumber (Chinese Long) v3carcucB0296
Carg02256Cla97C01G013520Watermelon (97103) v2carwmbB0263
Carg02256Cla97C05G106500Watermelon (97103) v2carwmbB0273
Carg02256Cla97C09G179720Watermelon (97103) v2carwmbB0279
Carg02256Bhi07G001293Wax gourdcarwgoB0352
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02256Carg06676Silver-seed gourdcarcarB300
Carg02256Carg04390Silver-seed gourdcarcarB306
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02256Silver-seed gourdcarcarB111
Carg02256Silver-seed gourdcarcarB249
Carg02256Silver-seed gourdcarcarB299
Carg02256Silver-seed gourdcarcarB312
Carg02256Cucumber (Gy14) v2carcgybB0275
Carg02256Cucumber (Gy14) v1carcgyB0321
Carg02256Cucurbita maxima (Rimu)carcmaB0358
Carg02256Cucurbita maxima (Rimu)carcmaB0359
Carg02256Cucurbita maxima (Rimu)carcmaB0360
Carg02256Cucurbita maxima (Rimu)carcmaB0374
Carg02256Cucurbita moschata (Rifu)carcmoB0358
Carg02256Cucurbita moschata (Rifu)carcmoB0360
Carg02256Cucurbita pepo (Zucchini)carcpeB0364
Carg02256Cucurbita pepo (Zucchini)carcpeB0378
Carg02256Cucurbita pepo (Zucchini)carcpeB0380
Carg02256Wild cucumber (PI 183967)carcpiB0292
Carg02256Wild cucumber (PI 183967)carcpiB0288
Carg02256Cucumber (Chinese Long) v2carcuB0285
Carg02256Cucumber (Chinese Long) v2carcuB0288
Carg02256Cucumber (Chinese Long) v3carcucB0291
Carg02256Bottle gourd (USVL1VR-Ls)carlsiB233
Carg02256Bottle gourd (USVL1VR-Ls)carlsiB238
Carg02256Melon (DHL92) v3.5.1carmeB0266
Carg02256Melon (DHL92) v3.5.1carmeB0273
Carg02256Melon (DHL92) v3.6.1carmedB0277
Carg02256Melon (DHL92) v3.6.1carmedB0284
Carg02256Watermelon (Charleston Gray)carwcgB0252
Carg02256Watermelon (97103) v1carwmB0249
Carg02256Watermelon (97103) v1carwmB0256
Carg02256Watermelon (97103) v2carwmbB0265
Carg02256Wax gourdcarwgoB0339