Carg06663 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06663
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U6 snRNA-associated Sm-like protein LSm8
Location	Cucurbita_argyrosperma_scaffold_012 : 278988 .. 281828 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGGACCTGGACTTGAATCACTGGTTGATCGTAAGTTATCTCATTAATAATCCCTCAAACTCTTTGTTTGTATACGTATATGTAGTTCATACAGTGTGAAAATGAGATAATTATTTTTTCTCTAGAGGATAGTATTGATCTTCTGAGGCATGCAAATTGAATAGAATGTCTTCTTTTGAGCTGGTTATGAATTGTTCTGGGAGATTCAAAAGTTCCTTTTTGTACTATTTTCTGTTTGATTTAATGAAACCTAGAATATTATCCATCACACTGTTGGATGATGAAAATCTCACTAGTCCCACGTCGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAATAATACTCTCTCCATTGGTATGAAGCCTTTTGGGGAAGCCCAAAGCAAAGCCACGAGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATGGTATCAAAGCCATGCCCTAAACTTAGCCATGCCAATAGAATCCTCAAACATCGAACAAAGGACTCCAAAAAGATAAGGAGTCGAGCCTCATCGAAGGCATAGTAAAAAATGACTAAGACTCCAAAAGAAAAAATGAGTCAAGCCTCGATTAAGGGGAGGCGTACTTTGTTCGAGGGGAGGTGTTGGATGATGAAAATCCCACTAGTCCCACATGGCTAATTTAGGGAACGATCATGGGTTTATAATCAAAGAATACTCTCTCCATTGGTACGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGATTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCAATCTAACACACATGTCCATGTAAAAACTAAAGGCTTAGACGGGGTGAGTTCAAGCATGATGACCACCTACCTAGAATTTAATATCCTACAAGTTATCTGGATAGCCAAATGTAGTAGGATTAGACGTCCTGTGAGAACACTTGAGAAGTGCGTTAGCTAGCCAAAACACTCGTAGATATATATTAAAAGAAACAAGGAAATTTAGAATATCATACATTTTGGTATAGAACGATTTCAGATGTAAATGGGGTGGTTCTGAGAAACTAATGTATTTAAAGTTCATGTTGAATTCAATTTCAGTTGACTGACTTTACCTTTTAATTTTTTTAGAAACAATATCAGTTATCACTAATGATGGCCGCAATATAGTGGTATGTTCATGAACTATCTTCCAGTTGACTGATATTTCATCCACCCAATTCGTGTCTATATTAACGATACTTTATTCAGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTCGATGAATCTCATGAACGTGTTTACTCGACCAAGGTTTGTATGCTGATAACTTAGATGGAATTTTCTACGTTCTATTTCTCATTCATCGACTGTTGGTGTAATCGAAAAAAAAAAAAAAAAAAAAAAAAAACTATAACTAATTTTCTACGTTCTATTTCTCTTTCATCGACTGTTGGTCTCTATTCTATGCAGTGGACAATATAAAAAATCTAGTTTTCATTTTTTGTTTTATATTCATTTTCAATTATTCACCATATAGGCCTTTGTTTTGTGAAATTATTATTACCCCCATTGATCTCAGGGCCCATCATAGTTGTTTGCTTATATCAATTTTTTGAGTTAATATTAGGATGATTTTCGGTTTAAATTTTTGTTCGGAATATGGGTTTCGGAAAATTCACAAGAAGATTCCGACTTGATGGATTTCAAGGGATTTAAGGTAGAGCATTTTTCCTTTGCATTCCGTTTTTATAACTCGATTCTTCTCTTGTTCTGCAGGAAGGAGTTCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATGTAAGTTACCGTCTCATTTTAGTTTACTCTCTCTACACATGCTAACCTGAATATCTGAACGTAGCTCAACTAGTTAAGGTATATACTTTCAACCAAAAGGTTACAAGTTTGAATCTCCTCACCCCATGTTATTGAACTCTAAACAAAAGTATGCACGTATAATCACATGTTATTGAACTCTAAACAAAAGTATGCACGTATAAGCACATGTTATTGAACTCTAAACAAAAGTATGCACGTATAACGACATGTTATTGAACTCTAAACAAAAGTATGCACGTATAGCGACATGCTATTGAACTCTAAACAAAAGTATGCACGTATAGCGACATGTTATTGAACTCTAAACAAAAGTATGCATGCATAACAAATGATGTGAACTATGTATATCCTCAACCAAGAAGCTAGAAGTTTGAGCTTTCACACTCGACGTGTTATTGAAGTTCGAACTCTAAGAAGATTGTGTGCCCGTGCAACGAACAAAACGTGATATTAGATCCTAAAACAAAGAGTGCTGTGAAAACATGTTCAACTAACTATTTTTAAAATCTTGTATAACATGAATAGTGATTATGGTAGAGAGCTATTCATTCATTCCTTGTTTTTACATTAGAATGAAACTCATAATGCTCTTAATTTTCTGCAGAAGCATTGTTGGGGAGCTAGATGAAGAACTTGATTCAAATTTGGACTTGTCGAAGTTGAGAGCCCATCCTCTAAAGCCTGTGATTCATTAATTGTGGACCATCAAGAACAAAAAGCTGTCAAACGGTTTTTAGCTTTAACCTTTCATCGCATTTTACAGCTTTGTTTAGATGGCGGGCATTATATTCGTTATGAATATATTACATATTTGAAATTGAAATATTTCGGATATTTTATTTGCTAAGAGAATTTAATGTTGTCCTATGAGAATAGACAAATTGCATACCATCTCACTTCAACTCTCATGAATATATATTTTAAAAAAATTT

mRNA sequence

ATGGCAAGTGGACCTGGACTTGAATCACTGGTTGATCAAACAATATCAGTTATCACTAATGATGGCCGCAATATAGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTCGATGAATCTCATGAACGTGTTTACTCGACCAAGGAAGGAGTTCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAAGAACTTGATTCAAATTTGGACTTGTCGAAGTTGAGAGCCCATCCTCTAAAGCCTGTGATTCATTAATTGTGGACCATCAAGAACAAAAAGCTGTCAAACGGTTTTTAGCTTTAACCTTTCATCGCATTTTACAGCTTTGTTTAGATGGCGGGCATTATATTCGTTATGAATATATTACATATTTGAAATTGAAATATTTCGGATATTTTATTTGCTAAGAGAATTTAATGTTGTCCTATGAGAATAGACAAATTGCATACCATCTCACTTCAACTCTCATGAATATATATTTTAAAAAAATTT

Coding sequence (CDS)

ATGGCAAGTGGACCTGGACTTGAATCACTGGTTGATCAAACAATATCAGTTATCACTAATGATGGCCGCAATATAGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTCGATGAATCTCATGAACGTGTTTACTCGACCAAGGAAGGAGTTCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAAGAACTTGATTCAAATTTGGACTTGTCGAAGTTGAGAGCCCATCCTCTAAAGCCTGTGATTCATTAA

Protein sequence

MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH

Homology

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BLAST of Carg06663 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 7.5e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

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BLAST of Carg06663 vs. NCBI nr
Match: XP_004137538.1 (PREDICTED: sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_008437187.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_016901717.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >KGN64224.1 hypothetical protein Csa_1G043270 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. NCBI nr
Match: XP_011621662.1 (sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520001.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520002.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda] >ERN01583.1 hypothetical protein AMTR_s00002p00272060 [Amborella trichopoda])

HSP 1 Score: 193.4 bits (490), Expect = 3.7e-46
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. NCBI nr
Match: XP_014502667.1 (sm-like protein LSM8 [Vigna radiata var. radiata] >XP_014502668.1 sm-like protein LSM8 [Vigna radiata var. radiata] >XP_017428338.1 PREDICTED: sm-like protein LSM8 [Vigna angularis] >KOM48867.1 hypothetical protein LR48_Vigan07g257100 [Vigna angularis] >BAT82510.1 hypothetical protein VIGAN_03253900 [Vigna angularis var. angularis])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. NCBI nr
Match: OWM62698.1 (hypothetical protein CDL15_Pgr019992 [Punica granatum])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDEELDS+LDLSKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVVH 98

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BLAST of Carg06663 vs. TAIR10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-37
Identity = 84/141 (59.57%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK--------- 60
           MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 61  ----------------------------------EGVQQLVLGLYIIRGDNISIVGELDE 99
                                             EGVQQ VLGLYIIRGDNI ++GELDE
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120

[Close]

BLAST of Carg06663 vs. TAIR10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 66.6 bits (161), Expect = 9.6e-12
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDVE 85

[Close]

BLAST of Carg06663 vs. TAIR10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDTE 85

[Close]

BLAST of Carg06663 vs. TAIR10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.8e-06
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYS----TKEGVQQLVLGLY 66
          L   VD+ + V    GR + G LKG+DQ  N++LDE+ E V       K   Q   LGL 
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLI 70

Query: 67 IIRGDNISIVGELD 77
          + RG  + +V   D
Sbjct: 71 VCRGTAVMLVSPTD 84

[Close]

BLAST of Carg06663 vs. TAIR10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 23/72 (31.94%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 5  PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
          P L+  +D+ + +  N  R +VG L+GFDQ  N+++D + E       G  +  +G+ +I
Sbjct: 8  PDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-----VNGDDKTDIGMVVI 67

Query: 65 RGDNISIVGELD 77
          RG++I  V  L+
Sbjct: 68 RGNSIVTVEALE 74

[Close]

BLAST of Carg06663 vs. Swiss-Prot
Match: sp|Q8VYI0|LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of Carg06663 vs. Swiss-Prot
Match: sp|Q3ZCE0|LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Carg06663 vs. Swiss-Prot
Match: sp|O95777|LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Carg06663 vs. Swiss-Prot
Match: sp|Q6ZWM4|LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Carg06663 vs. Swiss-Prot
Match: sp|Q5RCP3|LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-30
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Carg06663 vs. TrEMBL
Match: tr|A0A1S3ATI1|A0A1S3ATI1_CUCME (sm-like protein LSM8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. TrEMBL
Match: tr|A0A0A0LT86|A0A0A0LT86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043270 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. TrEMBL
Match: tr|W1P0W8|W1P0W8_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00002p00272060 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.5e-46
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. TrEMBL
Match: tr|A0A1S3U9G2|A0A1S3U9G2_VIGRR (sm-like protein LSM8 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763024 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.2e-46
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Carg06663 vs. TrEMBL
Match: tr|A0A0L9V1W8|A0A0L9V1W8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g257100 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.2e-46
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

The following BLAST results are available for this feature:

BLAST of Carg06663 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155134.1	7.5e-47	100.00	sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ...	[more]
XP_004137538.1	1.7e-46	98.98	PREDICTED: sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-...	[more]
XP_011621662.1	3.7e-46	95.92	sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520001.1 sm-like p...	[more]
XP_014502667.1	1.1e-45	95.92	sm-like protein LSM8 [Vigna radiata var. radiata] >XP_014502668.1 sm-like protei...	[more]
OWM62698.1	1.1e-45	95.92	hypothetical protein CDL15_Pgr019992 [Punica granatum]	[more]

BLAST of Carg06663 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65700.3	1.3e-37	59.57	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	9.6e-12	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	3.6e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.2	7.8e-06	36.49	Small nuclear ribonucleoprotein family protein	[more]
AT3G11500.1	1.3e-05	31.94	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Carg06663 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYI0\|LSM8_ARATH	1.3e-42	85.71	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1	[more]
sp\|Q3ZCE0\|LSM8_BOVIN	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3	[more]
sp\|O95777\|LSM8_HUMAN	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV...	[more]
sp\|Q6ZWM4\|LSM8_MOUSE	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S...	[more]
sp\|Q5RCP3\|LSM8_PONAB	2.6e-30	63.04	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV...	[more]

BLAST of Carg06663 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATI1\|A0A1S3ATI1_CUCME	1.1e-46	98.98	sm-like protein LSM8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=4 SV=1	[more]
tr\|A0A0A0LT86\|A0A0A0LT86_CUCSA	1.1e-46	98.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043270 PE=4 SV=1	[more]
tr\|W1P0W8\|W1P0W8_AMBTC	2.5e-46	95.92	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00002p00272060...	[more]
tr\|A0A1S3U9G2\|A0A1S3U9G2_VIGRR	7.2e-46	95.92	sm-like protein LSM8 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763024 PE=4 ...	[more]
tr\|A0A0L9V1W8\|A0A0L9V1W8_PHAAN	7.2e-46	95.92	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g257100 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0046540	U4/U6 x U5 tri-snRNP complex
GO:0005688	U6 snRNP

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034103	Lsm8
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06663-RA	Carg06663-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..74 e-value: 4.7E-17 score: 72.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 8.2E-18 score: 63.8
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 6..97 e-value: 5.6E-26 score: 92.7
None	No IPR available	PANTHER	PTHR15588	LSM1	coord: 5..98
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 5..98
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 8.44118E-46 score: 143.435
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 7..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06663	Csa1G043270	Cucumber (Chinese Long) v2	carcuB0523
Carg06663	MELO3C002181	Melon (DHL92) v3.5.1	carmeB0499
Carg06663	ClCG01G014710	Watermelon (Charleston Gray)	carwcgB0479
Carg06663	Cucsa.122390	Cucumber (Gy14) v1	carcgyB0568
Carg06663	CmaCh18G001080	Cucurbita maxima (Rimu)	carcmaB0692
Carg06663	CmoCh18G000850	Cucurbita moschata (Rifu)	carcmoB0673
Carg06663	Lsi02G002840	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06663	Cp4.1LG09g10790	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06663	CsGy1G007510	Cucumber (Gy14) v2	carcgybB0500
Carg06663	MELO3C002181.2	Melon (DHL92) v3.6.1	carmedB0504
Carg06663	CsaV3_1G007620	Cucumber (Chinese Long) v3	carcucB0529
Carg06663	Cla97C01G013720	Watermelon (97103) v2	carwmbB0516
Carg06663	Bhi08G001127	Wax gourd	carwgoB0600

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06663	Cucurbita maxima (Rimu)	carcmaB0690
Carg06663	Cucurbita moschata (Rifu)	carcmoB0671
Carg06663	Cucurbita pepo (Zucchini)	carcpeB0696
Carg06663	Wild cucumber (PI 183967)	carcpiB0531
Carg06663	Watermelon (97103) v1	carwmB0490