Csa1G043270 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G043270
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U6 snRNA-associated Sm-like protein LSm8; contains IPR010920 (Like-Sm (LSM) domain)
Location	Chr1 : 4832214 .. 4835175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATAAATAAAAGAGAGAGAAAACCTAAAACCCTTTCGTCTTCCTGACTCTCACGTACTACACCTTCTTCTTCTTCTTCACAGTTACCCCCGGCTCTTCCTTTCAGCAGCTCAGTATCGCCCCCGTCTTTCTTCCGCTCGTGCCGGCGGCGTTTTCTTCTCCTTGTCCTGCCGCAGCCTTCCTTTTGTTGTACTGACTTTCTACTCTCTCTTGCTACTGTTAAAGGTATGCTCAAAATCTCCATCTATGTCTTTCTTCTCCCTTGAAAACTCAAATTAGAATTGTCTAACGAAGGAGAAGAGATGTTTTGATGTTTATCGTTATTTGTGATTATTTTATAACATTAGCAGAGTAGCAACGAAAATGGAAACCGTTGTGGCAAATTGGATGTTTTCGAACGGTTGAGGCTTTGATCTTCTTTATATCTTTTATGTAGAATAGTTGAAGTAATCTATCGTGTCATCCAATGCTCTTTTGATCCCTAGCATGTAGGAGTTGTTTTGATTGACAGAACAACTCCAACCATGTATATATTGGCAGATTATAAACCTATAGGAGAGAAGAAAACACTTAATCTGTTTAGAAAATTGGAATTTCCAATTTAAATTTTGCTGGAATTACGAACTTTATATTATGCTTTGTAGTTCGTTTAAGTGATTTAGAGAATTCACTTGCAGCCGCAAGCGTGAAATTGGAAAAAATCGAGGCTAGTTCATTTCTGGTAAGGAAATTGCTACTTCAGATATTTACATTCAAATTAAGCTTTAAGTATTGATGTATAAGTATGAAACCTGGTTCCTGAAATGCTTATAACGCTTCTTGTTCTTCTTCTGGGACTAACTTGTAATCTATTGTGTCTTATTTTTCTTTGTTGTTTTGGGCAGAATCTAGCCGAGCTGATAACATAGAATAGCTCCCGGCTTATTGTAAGGGTCTTCAATATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCGTAAGTAATTTTATTTAGATTCTCTCGAACTGTTTGTTTTTATACATATATCAGTCTCTATAGTTCATTCAGTGTGAAAACGGAGTAATTGATCCAACGAGGATATTACTGAACTCTTGAGGGTGGAAGTTGAATAGATTGTTCCCTTTTGAGCTGGTTATGAACTGTTTTAGGCTATTCAAAAGAACCTCTTTGTAACCTGTTATACTTTGTTGAAGATATATATGGATTTCTCCTCTATTGTTGATTGGTTTTAAGATGAAATCCTATGTTATTGTCTAATATACTGTTCTTAATCTTCTCACTTGCTTGCACTAAAATCATCCTCTTAACTTCTTTTTTTAGAAACAATATCAGTTATCACAAACGACGGCCGCAATATAGTGGTATGGTTGTGAGCTATCATCTAGTTAACTGATATTTCATCCACCCAGATTGTGTTTAATTTAATAATACTTTATGCAGGGAGTGTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCTACCAAGGTTTGTACAATAACCGTTGTTAACTAAGATGGAATTTTCTACTTTCTATTGCTCTTCCGTTGACTGTTAGTTTAGAGAGAGAATTTTTTCAATATGTAAAAATAATTTATATGATTTGACTGTTATCACACCTTAGTTGATGCATTTCTATTATGCTGGTTCGGACAAAATTTTTCATACTTGGCTGATTGTCGTTGTATTTTTTGTTTATATTTTAAATTAGAAAACATGATTCTACATTGGTTAGATTAATGTGATTCGAGCTGCTAAAATATCAAATGAGATGTGAGAAGGAGTAGAAGCAACAAGGGGATAATATGATGATTAAGAAGTGGTAGTTCTATACTTTCAATTGATACATGAAAATTTTGTTTTTTAAATTTGAAGACTGAAGTTAGATCTTGAGTACAAAATTTTCCCCTTGAGGAAAGCATGTTTTTCAACAGATACCAAAACTGACCACATTAGCTTAATTCTGCCTTCATGCTGAGTTAAATTTACTCCTTCAAAAGCATGCCCTAGTTTGCTTTCTCTATTCTATGCAAATGGATAGTAAGCCATCTAGTTTTCATTTCTGATTTTATCTTCATTTCAATTATTCACCGTGTAGGCCTTTGTTGTGGGAAACTGATTCCATGACTATATGTATAATGTTTTTGTTCATCAGTTCCATAGTTCAAATAACAAGTACTAGCATTTTCATGTGGATCAAAAGTTTTCATTCAGACAGAAATGTCTATACTCATTAAATTATGTGAACGGATAAATTTTCATTTGAATTTGTTGGATCCTTGAATTTTCTGATGCAATGGCTTTCAAAGGATTTAAAACTCTACATTTTTCCTTTGAATTAACTCAATACTTACTTCTCGATCTGCAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCCGAGGCGACAATATGTAACTACCATCTCACTTTTTTTCTTCTCGTTTTTTTTTTCAAGGAGTTAACCGAGAGGTTAGAGGCTCAAATACCTCCTCTCCTGCAAGCATATTGTAGAATCGAGGAGAAAAGAATCATAAAAAACATGATCTTGTTTAGAGTTATATTTCTTTTTCCTAATTTCACTAGAAACTTATTGTTTTGAAACTCATGAAGTTAATCTTGTGCAGAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTAGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATTCACTAATTGGAGCAGGAAGCAATGAGTTTGTGTTTATTATTATTATGAGAAGCTTCCACTAAAACAAGTCAAGCTGTTATCGGTTCTTTTTTTGGCTTTAACCTCTTTCATCACCTTTCACAGCTTTGCTTAGATAGTGAGTATTATTTGATGCTTATGGATATTATTAAATATTTGAAAGTTAAATATTTGGAATTTAAATACTTGAGATG

mRNA sequence

ATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCAAACAATATCAGTTATCACAAACGACGGCCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCTACCAAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCCGAGGCGACAATATAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTAGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATTCACTAA

Coding sequence (CDS)

ATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCAAACAATATCAGTTATCACAAACGACGGCCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCTACCAAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCCGAGGCGACAATATAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTAGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATTCACTAA

Protein sequence

MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH*

Homology

[Close]

BLAST of Csa1G043270 vs. Swiss-Prot
Match: LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-41
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of Csa1G043270 vs. Swiss-Prot
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-29
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Csa1G043270 vs. Swiss-Prot
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-29
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Csa1G043270 vs. Swiss-Prot
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-29
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Csa1G043270 vs. Swiss-Prot
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-29
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of Csa1G043270 vs. TrEMBL
Match: A0A0A0LT86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043270 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. TrEMBL
Match: W1P0W8_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00272060 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-45
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. TrEMBL
Match: A0A0L9V1W8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g257100 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.7e-45
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. TrEMBL
Match: A0A0S3RPK9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G253900 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.7e-45
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. TrEMBL
Match: A0A068U0P8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036853001 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.4e-45
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+ GPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSGGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELD+NLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDANLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. TAIR10
Match: AT1G65700.3 (AT1G65700.3 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 116.7 bits (291), Expect = 8.1e-27
Identity = 71/141 (50.35%), Postives = 82/141 (58.16%), Query Frame = 1


Query: 1   MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK--------E 60
           MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 61  GVQQ-----LVLGLYIIRGDN------------------------------ISIVGELDE 99
            + Q     LVL  ++    +                              I ++GELDE
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120

[Close]

BLAST of Csa1G043270 vs. TAIR10
Match: AT1G19120.1 (AT1G19120.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-11
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDVE 85

[Close]

BLAST of Csa1G043270 vs. TAIR10
Match: AT3G14080.1 (AT3G14080.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDTE 85

[Close]

BLAST of Csa1G043270 vs. NCBI nr
Match: gi|449439529|ref|XP_004137538.1| (PREDICTED: sm-like protein LSM8 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. NCBI nr
Match: gi|586677709|ref|XP_006839014.1| (PREDICTED: sm-like protein LSM8 [Amborella trichopoda])

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-45
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. NCBI nr
Match: gi|702363475|ref|XP_010060337.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm8 [Eucalyptus grandis])

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-45
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGLDSLVDQTISVITNDGRNIVGVLKG+DQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSTGPGLDSLVDQTISVITNDGRNIVGVLKGYDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. NCBI nr
Match: gi|950982973|ref|XP_014502667.1| (PREDICTED: sm-like protein LSM8 [Vigna radiata var. radiata])

HSP 1 Score: 188.0 bits (476), Expect = 8.2e-45
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of Csa1G043270 vs. NCBI nr
Match: gi|661894715|emb|CDP01714.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+ GPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSGGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELD+NLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDANLDLSKLRAHPLKPVIH 98

The following BLAST results are available for this feature:

BLAST of Csa1G043270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM8_ARATH	1.9e-41	84.69	Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1	[more]
LSM8_PONAB	3.7e-29	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3	[more]
LSM8_BOVIN	3.7e-29	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3	[more]
LSM8_MOUSE	3.7e-29	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3	[more]
LSM8_HUMAN	3.7e-29	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3	[more]

BLAST of Csa1G043270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT86_CUCSA	1.4e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043270 PE=4 SV=1	[more]
W1P0W8_AMBTC	2.0e-45	94.90	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00272060 PE=4 SV=...	[more]
A0A0L9V1W8_PHAAN	5.7e-45	94.90	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g257100 PE=4 SV=1	[more]
A0A0S3RPK9_PHAAN	5.7e-45	94.90	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G253900 PE=...	[more]
A0A068U0P8_COFCA	7.4e-45	94.90	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036853001 PE=4 SV=1	[more]

BLAST of Csa1G043270 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65700.3	8.1e-27	50.35	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	4.8e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	1.8e-10	43.06	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Csa1G043270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439529\|ref\|XP_004137538.1\|	1.9e-46	100.00	PREDICTED: sm-like protein LSM8 [Cucumis sativus]	[more]
gi\|586677709\|ref\|XP_006839014.1\|	2.8e-45	94.90	PREDICTED: sm-like protein LSM8 [Amborella trichopoda]	[more]
gi\|702363475\|ref\|XP_010060337.1\|	2.8e-45	95.92	PREDICTED: U6 snRNA-associated Sm-like protein LSm8 [Eucalyptus grandis]	[more]
gi\|950982973\|ref\|XP_014502667.1\|	8.2e-45	94.90	PREDICTED: sm-like protein LSM8 [Vigna radiata var. radiata]	[more]
gi\|661894715\|emb\|CDP01714.1\|	1.1e-44	94.90	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU093343	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G043270.1	Csa1G043270.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU093343	CU093343	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 score: 8.0
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..74 score: 5.0
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 7..81 score: 5.79
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 7..84 score: 1.7
None	No IPR available	PANTHER	PTHR15588	LSM1	coord: 1..98 score: 1.7
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 1..98 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G043270	MELO3C002181	Melon (DHL92) v3.5.1	cumeB027
Csa1G043270	ClCG01G014710	Watermelon (Charleston Gray)	cuwcgB021
Csa1G043270	Lsi02G002840	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G043270	MELO3C002181.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G043270	Cla97C01G013720	Watermelon (97103) v2	cuwmbB010
Csa1G043270	Bhi08G001127	Wax gourd	cuwgoB028
Csa1G043270	Cucsa.122390	Cucumber (Gy14) v1	cgycuB159
Csa1G043270	CmaCh18G001080	Cucurbita maxima (Rimu)	cmacuB390
Csa1G043270	CmoCh18G000850	Cucurbita moschata (Rifu)	cmocuB380
Csa1G043270	Cp4.1LG09g10790	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G043270	CsGy1G007510	Cucumber (Gy14) v2	cgybcuB001
Csa1G043270	Carg06663	Silver-seed gourd	carcuB0523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G043270	Cucurbita maxima (Rimu)	cmacuB217
Csa1G043270	Cucurbita moschata (Rifu)	cmocuB202
Csa1G043270	Watermelon (97103) v1	cuwmB041
Csa1G043270	Cucurbita pepo (Zucchini)	cpecuB505