CsaV3_1G007620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G007620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	U6 snRNA-associated Sm-like protein LSm8
Location	chr1 : 4851297 .. 4853110 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCGTAAGTAATTTTATTTAGATTCTCTCGAACTGTTTGTTTTTATACATATATCAGTCTCTATAGTTCATTCAGTGTGAAAACGGAGTAATTGATCCAACGAGGATATTACTGAACTCTTGAGGGTGGAAGTTGAATAGATTGTTCCCTTTTGAGCTGGTTATGAACTGTTTTAGGCTATTCAAAAGAACCTCTTTGTAACCTGTTATACTTTGTTGAAGATATATATGGATTTCTCCTCTATTGTTGATTGGTTTTAAGATGAAATCCTATGTTATTGTCTAATATACTGTTCTTAATCTTCTCACTTGCTTGCACTAAAATCATCCTCTTAACTTCTTTTTTTAGAAACAATATCAGTTATCACAAACGACGGCCGCAATATAGTGGTATGGTTGTGAGCTATCATCTAGTTAACTGATATTTCATCCACCCAGATTGTGTTTAATTTAATAATACTTTATGCAGGGAGTGTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCTACCAAGGTTTGTACAATAACCGTTGTTAACTAAGATGGAATTTTCTACTTTCTATTGCTCTTCCGTTGACTGTTAGTTTAGAGAGAGAATTTTTTCAATATGTAAAAATAATTTATATGATTTGACTGTTATCACACCTTAGTTGATGCATTTCTATTATGCTGGTTCGGACAAAATTTTTCATACTTGGCTGATTGTCGTTGTATTTTTTGTTTATATTTTAAATTAGAAAACATGATTCTACATTGGTTAGATTAATGTGATTCGAGCTGCTAAAATATCAAATGAGATGTGAGAAGGAGTAGAAGCAACAAGGGGATAATATGATGATTAAGAAGTGGTAGTTCTATACTTTCAATTGATACATGAAAATTTTGTTTTTTAAATTTGAAGACTGAAGTTAGATCTTGAGTACAAAATTTTCCCCTTGAGGAAAGCATGTTTTTCAACAGATACCAAAACTGACCACATTAGCTTAATTCTGCCTTCATGCTGAGTTAAATTTACTCCTTCAAAAGCATGCCCTAGTTTGCTTTCTCTATTCTATGCAAATGGATAGTAAGCCATCTAGTTTTCATTTCTGATTTTATCTTCATTTCAATTATTCACCGTGTAGGCCTTTGTTGTGGGAAACTGATTCCATGACTATATGTATAATGTTTTTGTTCATCAGTTCCATAGTTCAAATAACAAGTACTAGCATTTTCATGTGGATCAAAAGTTTTCATTCAGACAGAAATGTCTATACTCATTAAATTATGTGAACGGATAAATTTTCATTTGAATTTGTTGGATCCTTGAATTTTCTGATGCAATGGCTTTCAAAGGATTTAAAACTCTACATTTTTCCTTTGAATTAACTCAATACTTACTTCTCGATCTGCAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCCGAGGCGACAATATGTAACTACCATCTCACTTTTTTTCTTCTCGTTTTTTTTTTCAAGGAGTTAACCGAGAGGTTAGAGGCTCAAATACCTCCTCTCCTGCAAGCATATTGTAGAATCGAGGAGAAAAGAATCATAAAAAACATGATCTTGTTTAGAGTTATATTTCTTTTTCCTAATTTCACTAGAAACTTATTGTTTTGAAACTCATGAAGTTAATCTTGTGCAGAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTAGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATTCACTAA

mRNA sequence

ATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCAAACAATATCAGTTATCACAAACGACGGCCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCTACCAAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCCGAGGCGACAATATAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTAGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATTCACTAA

Coding sequence (CDS)

ATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCAAACAATATCAGTTATCACAAACGACGGCCGCAATATAGTGGGAGTGTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCTACCAAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCCGAGGCGACAATATAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTAGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATTCACTAA

Protein sequence

MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH

Homology

[Close]

BLAST of CsaV3_1G007620 vs. NCBI nr
Match: XP_004137538.1 (PREDICTED: sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_008437187.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_016901717.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >KGN64224.1 hypothetical protein Csa_1G043270 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. NCBI nr
Match: OWM62698.1 (hypothetical protein CDL15_Pgr019992 [Punica granatum])

HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDEELDS+LDLSKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVVH 98

[Close]

BLAST of CsaV3_1G007620 vs. NCBI nr
Match: XP_011621662.1 (sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520001.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520002.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda] >ERN01583.1 hypothetical protein AMTR_s00002p00272060 [Amborella trichopoda])

HSP 1 Score: 192.6 bits (488), Expect = 6.4e-46
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. NCBI nr
Match: XP_010060337.1 (PREDICTED: sm-like protein LSM8 [Eucalyptus grandis] >XP_010060338.1 PREDICTED: sm-like protein LSM8 [Eucalyptus grandis] >XP_018732094.1 PREDICTED: sm-like protein LSM8 [Eucalyptus grandis])

HSP 1 Score: 192.6 bits (488), Expect = 6.4e-46
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGLDSLVDQTISVITNDGRNIVGVLKG+DQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSTGPGLDSLVDQTISVITNDGRNIVGVLKGYDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. TAIR10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 151.8 bits (382), Expect = 2.3e-37
Identity = 83/141 (58.87%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK--------- 60
           MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 61  ----------------------------------EGVQQLVLGLYIIRGDNISIVGELDE 99
                                             EGVQQ VLGLYIIRGDNI ++GELDE
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120

[Close]

BLAST of CsaV3_1G007620 vs. TAIR10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDVE 85

[Close]

BLAST of CsaV3_1G007620 vs. TAIR10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDTE 85

[Close]

BLAST of CsaV3_1G007620 vs. TAIR10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYS----TKEGVQQLVLGLY 66
          L   VD+ + V    GR + G LKG+DQ  N++LDE+ E V       K   Q   LGL 
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLI 70

Query: 67 IIRGDNISIVGELD 77
          + RG  + +V   D
Sbjct: 71 VCRGTAVMLVSPTD 84

[Close]

BLAST of CsaV3_1G007620 vs. TAIR10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05
Identity = 23/72 (31.94%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 5  PGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 64
          P L   +D+ + +  N  R +VG L+GFDQ  N+++D + E       G  +  +G+ +I
Sbjct: 8  PDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-----VNGDDKTDIGMVVI 67

Query: 65 RGDNISIVGELD 77
          RG++I  V  L+
Sbjct: 68 RGNSIVTVEALE 74

[Close]

BLAST of CsaV3_1G007620 vs. Swiss-Prot
Match: sp|Q8VYI0|LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.3e-42
Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of CsaV3_1G007620 vs. Swiss-Prot
Match: sp|Q3ZCE0|LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 4.4e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of CsaV3_1G007620 vs. Swiss-Prot
Match: sp|O95777|LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 4.4e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of CsaV3_1G007620 vs. Swiss-Prot
Match: sp|Q6ZWM4|LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 4.4e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of CsaV3_1G007620 vs. Swiss-Prot
Match: sp|Q5RCP3|LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 4.4e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of CsaV3_1G007620 vs. TrEMBL
Match: tr|A0A1S3ATI1|A0A1S3ATI1_CUCME (sm-like protein LSM8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. TrEMBL
Match: tr|A0A0A0LT86|A0A0A0LT86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043270 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. TrEMBL
Match: tr|A0A218VR65|A0A218VR65_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019992 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.9e-46
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDEELDS+LDLSKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVVH 98

[Close]

BLAST of CsaV3_1G007620 vs. TrEMBL
Match: tr|W1P0W8|W1P0W8_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00002p00272060 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-46
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS++GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of CsaV3_1G007620 vs. TrEMBL
Match: tr|A0A1S3U9G2|A0A1S3U9G2_VIGRR (sm-like protein LSM8 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763024 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-45
Identity = 93/98 (94.90%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNIS+VGELDE+LDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137538.1	4.5e-47	100.00	PREDICTED: sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-...	[more]
XP_022155134.1	1.3e-46	98.98	sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ...	[more]
OWM62698.1	2.9e-46	96.94	hypothetical protein CDL15_Pgr019992 [Punica granatum]	[more]
XP_011621662.1	6.4e-46	94.90	sm-like protein LSM8 isoform X1 [Amborella trichopoda] >XP_020520001.1 sm-like p...	[more]
XP_010060337.1	6.4e-46	95.92	PREDICTED: sm-like protein LSM8 [Eucalyptus grandis] >XP_010060338.1 PREDICTED: ...	[more]

BLAST of CsaV3_1G007620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65700.3	2.3e-37	58.87	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	1.6e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	6.3e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.2	1.0e-05	36.49	Small nuclear ribonucleoprotein family protein	[more]
AT3G11500.1	3.0e-05	31.94	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CsaV3_1G007620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYI0\|LSM8_ARATH	2.3e-42	84.69	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1	[more]
sp\|Q3ZCE0\|LSM8_BOVIN	4.4e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3	[more]
sp\|O95777\|LSM8_HUMAN	4.4e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV...	[more]
sp\|Q6ZWM4\|LSM8_MOUSE	4.4e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S...	[more]
sp\|Q5RCP3\|LSM8_PONAB	4.4e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV...	[more]

BLAST of CsaV3_1G007620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATI1\|A0A1S3ATI1_CUCME	2.9e-47	100.00	sm-like protein LSM8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=4 SV=1	[more]
tr\|A0A0A0LT86\|A0A0A0LT86_CUCSA	2.9e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043270 PE=4 SV=1	[more]
tr\|A0A218VR65\|A0A218VR65_PUNGR	1.9e-46	96.94	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019992 PE=4 SV=1	[more]
tr\|W1P0W8\|W1P0W8_AMBTC	4.3e-46	94.90	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00002p00272060...	[more]
tr\|A0A1S3U9G2\|A0A1S3U9G2_VIGRR	1.2e-45	94.90	sm-like protein LSM8 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763024 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0046540	U4/U6 x U5 tri-snRNP complex
GO:0005688	U6 snRNP

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034103	Lsm8
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007620.1	CsaV3_1G007620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..74 e-value: 5.0E-17 score: 72.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 8.2E-18 score: 63.8
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 6..97 e-value: 1.2E-25 score: 91.6
None	No IPR available	PANTHER	PTHR15588	LSM1	coord: 5..98
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 5..98
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 4.11994E-45 score: 141.894
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 7..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G007620	Cucsa.122390	Cucumber (Gy14) v1	cgycucB163
CsaV3_1G007620	CmaCh18G001080	Cucurbita maxima (Rimu)	cmacucB0464
CsaV3_1G007620	CmoCh18G000850	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G007620	Cp4.1LG09g10790	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G007620	CsGy1G007510	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G007620	Carg06663	Silver-seed gourd	carcucB0529
CsaV3_1G007620	MELO3C002181	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G007620	ClCG01G014710	Watermelon (Charleston Gray)	cucwcgB023
CsaV3_1G007620	Lsi02G002840	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G007620	MELO3C002181.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G007620	Cla97C01G013720	Watermelon (97103) v2	cucwmbB009
CsaV3_1G007620	Bhi08G001127	Wax gourd	cucwgoB031

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G007620	Cucurbita maxima (Rimu)	cmacucB0248
CsaV3_1G007620	Cucurbita moschata (Rifu)	cmocucB0234
CsaV3_1G007620	Cucurbita pepo (Zucchini)	cpecucB0623
CsaV3_1G007620	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G007620	Watermelon (97103) v1	cucwmB048