Carg06353 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06353
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	replication factor C subunit 3-like
Location	Cucurbita_argyrosperma_scaffold_016 : 1149511 .. 1154752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCACACAACAACAACCCAACTCCTCCTCCTCCTCCTCTCTCCGGCGCTCCTTGTCAGACTCCAACACGCGCCGCCGCCAACGCCGCCGTGGGAGCATCTCCACAGCCTCCTCCTCCTCAAAATCGTCCTGGTCCACAAAGCTAGCCAAACTCCTAGCCCGTCTCAACCTCTTCTCCCGGAACTCCGACTTGACGGAAGAAAGCCTCCAAGCCCATAACGAACGAATCGACGACCTCGATAAAACCCCCCTTAAATCCAGCCCTTATTACCGCGGCCTCACTGACTCCTCCCTCGCCATCAATTACCACCATGGCCCACTCACCACTGGTCCCCACCACTACGCCAGCTCAACCACCACGGCCCAAACTCAAACCTCTCTCTCATACGCCGTCGTTTCAAAACTCAAGGAGTGGGCCCCATGTCTCATAGGAAAACCCAATACGAAGCCGCCAGCTCATCAACAATACGAAACTCCAACGACGACAACAGTTGTGGGTAAAACGACGTCGTTGGCTGTTTCGTCGTCTCCGGAGAAGATTGAGAGGTGGGCGACGGAGAAGGAAGAGAAGCTGTTGAGGGAGAGATTAGTAATGTACGGGCGGAGAGAGGGAGGGAGTGGAGTGGGGGTAGACGGCGGAGGAGAGGCGGCGGAAAAGGAAAGGTACACGTGGGGGGATAAATACAGGCCAAAAGTGCTGGAGGATTTTATATGCAATCGGAAAACGGCGTGTGAGTTGAAGAAAGTGGTGGAGGAGAAGGGATGTGGGCATTATATATTCGAAGGGCCGCCGGGAGTTGGGAAAAGGACGATGATTCAAGCCATGCTCAGACAGGCTTTCGGAGAACAAGCAATGGAGGTGTATTGTCAGTATGCCTTAATTAATCTCTTATCTTATTATATCATTTCCATATCATAAAAATGCATTATATATATATATATATATATATATCTTAGTATAGAAGACTAGGTGTGACATTAAAATTTTAGTTTTTAAAAATTATATTTTATTTTTATATGAAATTATTATTCAATTTAATATTTCAATGAAATTTAAATTAAAATATATATTATATTATAATATATATATAATATATATATATATTATAATATATATATATTGATCGGAATGGTCAAAATAAATTGAAATTTTTGTGAGATGAAACTAAAATAGGAGGTGAGGGTATGAATGAGAAAGGCTTCCTTGTCGGGGTCACCGTCCTACACATCTCTAGATGTAGTCTAGTATTGTTTTGATAAATTGTAAAAAAATTTAATGGTAGTGTGTAGAAATATGCTTACATGGTGATATTGTTCGAGGGCTCCAAAGAAAGGAGTCGAGCCTCGATTAAGGGGAGGCTATTCGAGAGCTGCATAAGCCTCAGAGGAGGCTTATAGTGTACTTTGTTCGAGGGAGAATTGTTGAGGATTATTGGGAATGGGTCCCAAAGCATGGGGTTTATAAGTGAGGAATACTATCTCGACTTTTTGGGAGATCCCAAAGCCATAAGAGCTTACGGTCAAAGTGGACAATATCAATCTAGTTCTATGATTCTATTTTAATGAATTTTTGAATTATTTGAAATAATTAAAATTTTATAAGTTAGGAAATTTTCAAGATAGGGGTATAATTGGAATTAACTCATTTTTCTATTATTGTCTTATATTTATAGTTTTCCTTTTATATTTCTAAATATGTAATTTAGCTTTTGTTTCTCCACAGGTCAAGGAAGTTGATAGAGTTTTTGCCTTGAAGGTGGGTTTTATTTTCCCTTCAATGTGTATTTATTTATTTATTTTTTTTTCTTTTCGTTGTATTACAATTTTGCCCCTTAAGGATCATGCAATTACAAACTCTACCTCTATATTTTTTAAATGTTTTTTTACACTTAAATATATATATATATATATATTTGTTCTTTTTACTTTTCATTTAATTAAACTTGCTATAAAATTAAGAATGGATTTAATGACGTGGAGGGGTGTTGGTTAAATAAGTTGAAGCTGTGTGACGTGGCAGAGTGAAATGGTGGGGAGCATTGAAGTAAAGGTGAAGGAATCATCCCATTGTGTGGAAGTCAATCTCTCACAAACCAAAGGCTTTGAGAAACAAGTCATTGACCAGCTCATCAAAGAAACTCAATCCCCTTTGCCATGTAATCATGCCAGATGTCGAGGTACTATATACATGCCTTAATTTAACTAATTAATCATATTTTTTTATCTAAATATACCTCGACTGTACAGTAAAAAATTTCAATTTAAGCATAGTGCAACTGATTAAAACATATATCATCAGTCAAAGACGGAGGAGTTTGAATTTAAAAAAAAAAACCGTAAAGAGTCAATGTATTAATATTTGTCTATGTTCAAATTTTCATTTTTCGTGTTTAATTCTTAATGTTTTATGAATGTGTGAGATAAGGGGGAATGAAGCATTCCTTATAATGGTATAAAAACTTCTCTCTAATAGCACATTTTAAAGAAATTGTGAGGCTAACGATGATACGTAACGGGCCGAAGCTGATAATATATGCTAGTGGTGGGTTTGAGTTGTTATAAATGGTATCAGAGCTAGACACCGAGCGGTGTGTCAATGAAGACGCTGGTCCCTAAGGGGGTGGATTGAATTGTGAGATTCCACATCGGTTGGAGAGGGGAACAAAACATTTCTTATAACGGTGTAGAAACTTCTCTTTAGTAGACATATTTTAAAAAAACTGTGAGGCTAACGATAATATGTAACGGGTCAAAGCGAACAATATATGCTAGTGGTTGACTTGAGTTGTTATAACTAGTATCAGAGTCAAACACCAAGCGGTGTGCCAGTGAGGACACTGGTCCCCAAGAGGGGTGTACTGGATTGTGAGATTCCACATCAGTTGGAGAGAGGAACGAAACATTTCTTATAATGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAAAACCATGAGGCTAACAATGATACGTAACAGATAATATCTGTTAGCGATAGACTTGGGTTGTTACATGATGGGTCGTAATTTTAACTATCAACCTAAACATAGCTCGAGAATGTCTATTGTCGTTGATTCAAATTTCCGCTCTTTTATTTGGAGGGTGATAGAACGACCGAACATAGGTGAACGAGCCATAATATGCTACTTACAATATTTATAATGCAAAATATAAAATCTCAAAATTTTAGGATTCGAGGATAAGAATGTAACGTTCTGAAATCTAGAGTTAAATTCCCGCTAAATTCCAGAATATGGGTAAAAGTGTAATATTTTAAAATTTATAGACTAAATAGCAACTATACTCAAAACTTACTAATTAAAAGGGTTTTTTTTTAACTAAAAAAAAGCTAATATTTATTACAAAGATCAACATGTTTTTTTTACCATAAATTCATTTATATATTTATTTTGTAAAAAAATAATTGATTTTTAGATAGTGGAAGTTCTGGAATACATAGCAAAACAACAAGAATTCGACTTGTCGCGTCGAATGGCAGAGAGAATCGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTGGAGGCTTCGTGGAAAAAAAGGTTAGGAATTTATTTTTAATTTTTTTAATAATAATAATAATTATTATTTAATAATAAATTGAGGTTTTGATGAAGAAATTAATAATTAATTTGCAGTCGCTTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCTGATGTTGCTAAGAAGATCGTCGAGGAGCAAAGCCCAAAACAGTAATTTTACATCCTCACCATTATTAAAATATTATTTTTCATAAAAGGATTTTAGAATTTTTACTAATTAATTTTTACCAAAATTAAAAATTAAAAACCATTCTTTAGGTTTGGTTGATAACTATTTTATTATTTTTTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGAATTCTTTACCAAATTCTAAAAATAAATCTTTTTTAAAAAATTATTTATTAGTTTTTAAATGTTTATTTGATTTATAAAAATAAATGTAAAAAGTAAATACCAAAACAATAAAAGTAAGTGAAAATGGTATTTATGGGAATAATTTAAAAAAACAAGAAAAAAAAACCCCATATAATTATCAACCACAGCCTTATTTTTCAAATTTTTGTTTGGGTTTTTAAAATATATTTAATTAACGGGTGTTAATTAAAAAAAAAAAAAAAAATTCTACAATAATAATTTTTTTTAATTTTTTTTCTCTTTGTAATTCTAACAAATAAAAAAAATTAAAATTAAAATTTAAAATTTTCTTAAAAACAATGTTTATTTGCTGGTGCAGGCTGTATATTGTTCGTGGAAAGCTAAAAAAGCTTATTGAATACGATGTCTCCCCCAATTTCATTTTTAAGGTAAATTCTTATTTATTTTTCCCATTTTTTAAAATTATTTTTAAAAATAATTATTTTAAAATCATTAAATAAACAAATAATATATTTTTTTTTTATTGAGATTTTTCTTTAACAAATGTACGTACAGACTTTGGTAGACGAATTAAAGAAGTTCTTGGACGAAGAATTACAGCGTCGAGTCGAAAGTTTCTATGCCGATTATAACGTAATTTTTCTTTATTTTTTTCATTTTATTATAAATTAAAATATATAATAATAATAATAATGTGAATATTAATTTGAATTTCAGAAAATGGAGGAAAAACCATTTGTCACTGAAAAAGGCAATGGGGAAGAAGCAGTGATCAAAGAGCTGCATGATCCCATGAGAAAGAACGTTAACCACTTCTTGAAGATTGAAGGTAAATTATAATTAACCTACAAAATAAATAACCACTTTTTTAAGGTAAATTTAATATGTAAAATTTCATATATATATTAAAGCATAAAATTGATTTTTTAAAACAAGTTTTATATTTAAAATTTTACGTGGCAAAAAATGTATTTTTTATTCTCTTTTTAAAAATTAAATTTATTTGCTGATTATTTCTCGAATAAATATTTTAAAATTTTTAAAAGGTTGCCTGAAAAAAATGTTAATAAAAAAATATATTATATATCTATATATTTCAATTTTTTTTTTTTTAATTTCAATATTTTAAAATATAAATTATTACTAAAAAAAAGTATTTTTATTTCTTAATTTTCTTATACAGAATTCATAGCGAAGTTCATGAGCTGCTATAAGGGAGAAGCAAATAAGAACAATTATTTGCCGACATGA

mRNA sequence

ATGGCTGCCACACAACAACAACCCAACTCCTCCTCCTCCTCCTCTCTCCGGCGCTCCTTGTCAGACTCCAACACGCGCCGCCGCCAACGCCGCCGTGGGAGCATCTCCACAGCCTCCTCCTCCTCAAAATCGTCCTGGTCCACAAAGCTAGCCAAACTCCTAGCCCGTCTCAACCTCTTCTCCCGGAACTCCGACTTGACGGAAGAAAGCCTCCAAGCCCATAACGAACGAATCGACGACCTCGATAAAACCCCCCTTAAATCCAGCCCTTATTACCGCGGCCTCACTGACTCCTCCCTCGCCATCAATTACCACCATGGCCCACTCACCACTGGTCCCCACCACTACGCCAGCTCAACCACCACGGCCCAAACTCAAACCTCTCTCTCATACGCCGTCGTTTCAAAACTCAAGGAGTGGGCCCCATGTCTCATAGGAAAACCCAATACGAAGCCGCCAGCTCATCAACAATACGAAACTCCAACGACGACAACAGTTGTGGGTAAAACGACGTCGTTGGCTGTTTCGTCGTCTCCGGAGAAGATTGAGAGGTGGGCGACGGAGAAGGAAGAGAAGCTGTTGAGGGAGAGATTAGTAATGTACGGGCGGAGAGAGGGAGGGAGTGGAGTGGGGGTAGACGGCGGAGGAGAGGCGGCGGAAAAGGAAAGGTACACGTGGGGGGATAAATACAGGCCAAAAGTGCTGGAGGATTTTATATGCAATCGGAAAACGGCGTGTGAGTTGAAGAAAGTGGTGGAGGAGAAGGGATGTGGGCATTATATATTCGAAGGGCCGCCGGGAGTTGGGAAAAGGACGATGATTCAAGCCATGCTCAGACAGGCTTTCGGAGAACAAGCAATGGAGGTCAAGGAAGTTGATAGAGTTTTTGCCTTGAAGAGTGAAATGGTGGGGAGCATTGAAGTAAAGGTGAAGGAATCATCCCATTGTGTGGAAGTCAATCTCTCACAAACCAAAGGCTTTGAGAAACAAGTCATTGACCAGCTCATCAAAGAAACTCAATCCCCTTTGCCATGTAATCATGCCAGATGTCGAGTGGAAGTTCTGGAATACATAGCAAAACAACAAGAATTCGACTTGTCGCGTCGAATGGCAGAGAGAATCGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTGGAGGCTTCGTGGAAAAAAAGTCGCTTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCTGATGTTGCTAAGAAGATCGTCGAGGAGCAAAGCCCAAAACAGCTGTATATTGTTCGTGGAAAGCTAAAAAAGCTTATTGAATACGATGTCTCCCCCAATTTCATTTTTAAGACTTTGGTAGACGAATTAAAGAAGTTCTTGGACGAAGAATTACAGCGTCGAGTCGAAAGTTTCTATGCCGATTATAACAAAATGGAGGAAAAACCATTTGTCACTGAAAAAGGCAATGGGGAAGAAGCAGTGATCAAAGAGCTGCATGATCCCATGAGAAAGAACGTTAACCACTTCTTGAAGATTGAAGAATTCATAGCGAAGTTCATGAGCTGCTATAAGGGAGAAGCAAATAAGAACAATTATTTGCCGACATGA

Coding sequence (CDS)

ATGGCTGCCACACAACAACAACCCAACTCCTCCTCCTCCTCCTCTCTCCGGCGCTCCTTGTCAGACTCCAACACGCGCCGCCGCCAACGCCGCCGTGGGAGCATCTCCACAGCCTCCTCCTCCTCAAAATCGTCCTGGTCCACAAAGCTAGCCAAACTCCTAGCCCGTCTCAACCTCTTCTCCCGGAACTCCGACTTGACGGAAGAAAGCCTCCAAGCCCATAACGAACGAATCGACGACCTCGATAAAACCCCCCTTAAATCCAGCCCTTATTACCGCGGCCTCACTGACTCCTCCCTCGCCATCAATTACCACCATGGCCCACTCACCACTGGTCCCCACCACTACGCCAGCTCAACCACCACGGCCCAAACTCAAACCTCTCTCTCATACGCCGTCGTTTCAAAACTCAAGGAGTGGGCCCCATGTCTCATAGGAAAACCCAATACGAAGCCGCCAGCTCATCAACAATACGAAACTCCAACGACGACAACAGTTGTGGGTAAAACGACGTCGTTGGCTGTTTCGTCGTCTCCGGAGAAGATTGAGAGGTGGGCGACGGAGAAGGAAGAGAAGCTGTTGAGGGAGAGATTAGTAATGTACGGGCGGAGAGAGGGAGGGAGTGGAGTGGGGGTAGACGGCGGAGGAGAGGCGGCGGAAAAGGAAAGGTACACGTGGGGGGATAAATACAGGCCAAAAGTGCTGGAGGATTTTATATGCAATCGGAAAACGGCGTGTGAGTTGAAGAAAGTGGTGGAGGAGAAGGGATGTGGGCATTATATATTCGAAGGGCCGCCGGGAGTTGGGAAAAGGACGATGATTCAAGCCATGCTCAGACAGGCTTTCGGAGAACAAGCAATGGAGGTCAAGGAAGTTGATAGAGTTTTTGCCTTGAAGAGTGAAATGGTGGGGAGCATTGAAGTAAAGGTGAAGGAATCATCCCATTGTGTGGAAGTCAATCTCTCACAAACCAAAGGCTTTGAGAAACAAGTCATTGACCAGCTCATCAAAGAAACTCAATCCCCTTTGCCATGTAATCATGCCAGATGTCGAGTGGAAGTTCTGGAATACATAGCAAAACAACAAGAATTCGACTTGTCGCGTCGAATGGCAGAGAGAATCGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTGGAGGCTTCGTGGAAAAAAAGTCGCTTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCTGATGTTGCTAAGAAGATCGTCGAGGAGCAAAGCCCAAAACAGCTGTATATTGTTCGTGGAAAGCTAAAAAAGCTTATTGAATACGATGTCTCCCCCAATTTCATTTTTAAGACTTTGGTAGACGAATTAAAGAAGTTCTTGGACGAAGAATTACAGCGTCGAGTCGAAAGTTTCTATGCCGATTATAACAAAATGGAGGAAAAACCATTTGTCACTGAAAAAGGCAATGGGGAAGAAGCAGTGATCAAAGAGCTGCATGATCCCATGAGAAAGAACGTTAACCACTTCTTGAAGATTGAAGAATTCATAGCGAAGTTCATGAGCTGCTATAAGGGAGAAGCAAATAAGAACAATTATTTGCCGACATGA

Protein sequence

MAATQQQPNSSSSSSLRRSLSDSNTRRRQRRRGSISTASSSSKSSWSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHQQYETPTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCRVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEANKNNYLPT

Homology

[Close]

BLAST of Carg06353 vs. NCBI nr
Match: XP_022946202.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 942.6 bits (2435), Expect = 6.0e-271
Identity = 490/553 (88.61%), Postives = 490/553 (88.61%), Query Frame = 0


Query: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH 105
           WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH
Sbjct: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH 105

Query: 106 HGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHQQYETPTTTT 165
           HGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHQQYETPTTTT
Sbjct: 106 HGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHQQYETPTTTT 165

Query: 166 VVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYT 225
           VVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYT
Sbjct: 166 VVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYT 225

Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ
Sbjct: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285

Query: 286 AMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPC 345
           AMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPC
Sbjct: 286 AMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPC 345

Query: 346 NHARCR------------------------------------------------------ 405
           NHARCR                                                      
Sbjct: 346 NHARCRGILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLS 405

Query: 406 -------VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDEN 465
                  VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDEN
Sbjct: 406 PPSKQEIVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDEN 465

Query: 466 KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDE 525
           KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDE
Sbjct: 466 KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDE 525

Query: 526 ELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSC 538
           ELQ RVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSC
Sbjct: 526 ELQHRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSC 585

[Close]

BLAST of Carg06353 vs. NCBI nr
Match: XP_022975501.1 (replication factor C subunit 3-like [Cucurbita maxima])

HSP 1 Score: 805.4 bits (2079), Expect = 1.1e-229
Identity = 438/562 (77.94%), Postives = 440/562 (78.29%), Query Frame = 0


Query: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH 105
           WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH
Sbjct: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH 105

Query: 106 HGPL-----TTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHQQYET 165
           HGPL     TTG          AQTQTSLSYAVVSKLKEWAPCLIGKPN           
Sbjct: 106 HGPLTTTHVTTGXXXXXXXXXXAQTQTSLSYAVVSKLKEWAPCLIGKPNKXXXXXXXXXX 165

Query: 166 PTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDG----GG 225
                              EKIER ATEKEEKLLRERLVMYGRREG SGVGVDG      
Sbjct: 166 XXXXXXXXXXXXXXXXXXXEKIERLATEKEEKLLRERLVMYGRREGRSGVGVDGXXXXXX 225

Query: 226 EAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQA 285
                  YTWGDKYRPKVLEDFICNR+TACELKKVVEEKGCGHYIFEGPPGVGKRTMIQA
Sbjct: 226 XXXXXXXYTWGDKYRPKVLEDFICNRQTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQA 285

Query: 286 MLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLI 345
           MLRQAFGEQAMEVKEV RVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLI
Sbjct: 286 MLRQAFGEQAMEVKEVGRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLI 345

Query: 346 KETQSPLPCNHARCR--------------------------------------------- 405
           KETQSPLPCNHARCR                                             
Sbjct: 346 KETQSPLPCNHARCRGILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLS 405

Query: 406 ----------------VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKK 465
                           VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKK
Sbjct: 406 SLCTHVHLSPPSKQEIVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKK 465

Query: 466 SRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLV 525
           SRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLV
Sbjct: 466 SRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLV 525

Query: 526 DELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIE 538
           DELKKFLDEELQRRVESFYADYNKMEEKPFVT+KGNGEEAVIKELHDPMRKNVNHFLKIE
Sbjct: 526 DELKKFLDEELQRRVESFYADYNKMEEKPFVTDKGNGEEAVIKELHDPMRKNVNHFLKIE 585

[Close]

BLAST of Carg06353 vs. NCBI nr
Match: XP_011650816.1 (PREDICTED: replication factor C subunit 3-like [Cucumis sativus])

HSP 1 Score: 584.3 bits (1505), Expect = 4.1e-163
Identity = 341/571 (59.72%), Postives = 380/571 (66.55%), Query Frame = 0


Query: 49  KLAKLLARLNLFSRNSDLTEESLQAHNERIDD---LDKTPLKSSPYYRGLTDSSLAINYH 108
           KL KLLARL   SR+SDLTEESL+AHN+RI+D   LDKTP KSSPYYRGLTDSSLAINYH
Sbjct: 43  KLGKLLARLAFLSRDSDLTEESLEAHNKRINDLDTLDKTP-KSSPYYRGLTDSSLAINYH 102

Query: 109 HGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEW-APCLIGK--------PNTKPPAHQ 168
           HGPL + P+H   +T+ A +  S   ++VSK K++ APCL  +        P   P  HQ
Sbjct: 103 HGPLNSTPYHVTYATSAAPSTQS---SIVSKFKDYMAPCLRKQQPQSPQTSPRKVPRQHQ 162

Query: 169 QYET---------------PTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMY 228
           + +T                                                        
Sbjct: 163 RIQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 222

Query: 229 GRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGH-Y 288
                             EKERY+WGD  RPKVLEDFICN+KTA ELK++V+EKGCGH Y
Sbjct: 223 XXXXXXXXXXXXXXXXXXEKERYSWGDSCRPKVLEDFICNKKTAIELKEMVKEKGCGHYY 282

Query: 289 IFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVN 348
           IFEG PGVGKRTMIQAMLRQAFG Q+ME+KEV +VF LKSEM+GSIEVKVKESSH VEVN
Sbjct: 283 IFEGAPGVGKRTMIQAMLRQAFGNQSMEIKEVVKVFDLKSEMLGSIEVKVKESSHYVEVN 342

Query: 349 LSQTKGFEKQVIDQLIKETQSPLPCNHARCR----------------------------- 408
           +SQTKGFEKQVI QL+KE+ SPLPCNHA CR                             
Sbjct: 343 MSQTKGFEKQVIVQLMKESHSPLPCNHANCRGILLCEADQLSIETLMYIKWAMERYKGCS 402

Query: 409 --------------------------------VEVLEYIAKQQEFDLSRRMAERIADNSK 468
                                           VEVLE+IAKQQ FDLS+R+AERIADNS+
Sbjct: 403 KIFFCCSDASKLLLLSSLCTLVRLSPPSKQEIVEVLEFIAKQQGFDLSKRLAERIADNSR 462

Query: 469 NNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKK 528
           NNLRQAIRSLEASWKKS+LF+EDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKK
Sbjct: 463 NNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKK 522

Query: 529 LIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKE 531
           LIEYDVSPNFIF+TLVDELKKFLDEELQRRVE FYADYNK+EEK FV+EKG+GEEAVIK 
Sbjct: 523 LIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYNKLEEKVFVSEKGSGEEAVIKG 582

[Close]

BLAST of Carg06353 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 568.5 bits (1464), Expect = 2.3e-158
Identity = 332/572 (58.04%), Postives = 371/572 (64.86%), Query Frame = 0


Query: 50  LAKLLARLNLFSRNSDLTEESLQAHNERIDDLD---KTPLKSSPYYRGLTDSSLAINYHH 109
           L KLLARL L SR+SDLTEESL+AHN+RI+DLD   KTP KSSPYYRGLTDSSLAINYHH
Sbjct: 45  LGKLLARLALLSRDSDLTEESLEAHNKRINDLDTLEKTP-KSSPYYRGLTDSSLAINYHH 104

Query: 110 GPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKE-WAPCL--------------------- 169
           GPL + P++   +T+ A +  S   ++VSK KE WAPCL                     
Sbjct: 105 GPLNSTPYNVTYATSAAPSTQS---SIVSKFKEYWAPCLRXXXXXXXXXXXXXXXXXXXX 164

Query: 170 ----IGKPNTKPPAHQQYETPTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVM 229
                                                                       
Sbjct: 165 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 224

Query: 230 YGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGH- 289
                              EKERY+WGD YRPK LEDFICN+KTA ELK++V+EKGCGH 
Sbjct: 225 XXXXXXXXXXXXXXXXXXXEKERYSWGDNYRPKFLEDFICNKKTAIELKEMVKEKGCGHY 284

Query: 290 YIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEV 349
           YIFEG PGVGKRTMIQAMLR+AFG Q++E+KEV +VF LKSEM+GSIEVKVKESSH VEV
Sbjct: 285 YIFEGAPGVGKRTMIQAMLREAFGNQSVEIKEVVKVFDLKSEMLGSIEVKVKESSHYVEV 344

Query: 350 NLSQTKGFEKQVIDQLIKETQSPLPCNHARCR---------------------------- 409
           N+SQTKGFEKQVI QL+KE+ SPLPCNHA CR                            
Sbjct: 345 NMSQTKGFEKQVIVQLMKESHSPLPCNHANCRGILLCEADQLSNETLMYVKWAIERNKGC 404

Query: 410 ---------------------------------VEVLEYIAKQQEFDLSRRMAERIADNS 469
                                            VEVLE+IAKQQ FDLS+R+AERIADNS
Sbjct: 405 TKIFFCCTDASKLHLLSSVCTLVHLSPPSKQEIVEVLEFIAKQQGFDLSKRLAERIADNS 464

Query: 470 KNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLK 529
           KNNLRQAIRSLEASWKKS+LF+EDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLK
Sbjct: 465 KNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLK 524

Query: 530 KLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIK 531
           KLIEYDVSPNFIF+TLVDELKKFLDEELQRRVE FYADY K+EEK FV+E+G+GEE V+K
Sbjct: 525 KLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGSGEETVVK 584

[Close]

BLAST of Carg06353 vs. NCBI nr
Match: XP_023539425.1 (uncharacterized protein LOC111800075 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 559.7 bits (1441), Expect = 1.1e-155
Identity = 285/312 (91.35%), Postives = 288/312 (92.31%), Query Frame = 0


Query: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH 105
           WS+KLAKLLARLNLFSRNSDLTEE+LQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH
Sbjct: 49  WSSKLAKLLARLNLFSRNSDLTEETLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYH 108

Query: 106 HGPL------TTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHQQYE 165
           HGPL                    QTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAH Q+E
Sbjct: 109 HGPLXXXXXXXXXXXXXXXXXXXXQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHNQHE 168

Query: 166 TPTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAA 225
           TP TTTVVGKTTSL  SSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAA
Sbjct: 169 TPMTTTVVGKTTSLVASSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAA 228

Query: 226 EKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLR 285
           EKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLR
Sbjct: 229 EKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLR 288

Query: 286 QAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKET 345
           QAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKET
Sbjct: 289 QAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKET 348

Query: 346 QSPLPCNHARCR 352
           QSPLPCNHARCR
Sbjct: 349 QSPLPCNHARCR 360

[Close]

BLAST of Carg06353 vs. TAIR10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-31
Identity = 107/367 (29.16%), Postives = 165/367 (44.96%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W DKYRPK L+  I +   A +LKK+V E+ C H +F GP G GK+T+I A+L+Q +G  
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 286 AMEVKEVDRVFALKS-EMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLP 345
           A +VK  +R + + +      +E+    S++ VE+  S     ++ ++ ++IKE     P
Sbjct: 63  AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 346 --------------------------------------------CN---------HARCR 405
                                                       CN          +RC 
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182

Query: 406 ------------VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLF 465
                       V+VLE++AK++   L +  A RIA+ S  +LR+AI SLE    ++  F
Sbjct: 183 NVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPF 242

Query: 466 EEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELK 525
             ++      WE+ +A++A  +++EQSPK+L+ VRGK+ +L+   + P  I K L+ EL 
Sbjct: 243 TGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELL 302

Query: 526 KFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIA 527
           K LD EL+  V  + A Y                          MR        IE F+A
Sbjct: 303 KKLDSELKLEVCHWAAYYEHR-----------------------MRLGQKAIFHIEAFVA 346

[Close]

BLAST of Carg06353 vs. TAIR10
Match: AT1G77470.1 (replication factor C subunit 3)

HSP 1 Score: 50.8 bits (120), Expect = 3.0e-06
Identity = 25/81 (30.86%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 203 RREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIF 262
           R+    G  V G G   + +   W +KYRP+ L+D   +R     + ++  E    H + 
Sbjct: 18  RKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLL 77

Query: 263 EGPPGVGKRTMIQAMLRQAFG 284
            GPPG GK + I A+ R+ +G
Sbjct: 78  YGPPGTGKTSTILAVARKLYG 98

[Close]

BLAST of Carg06353 vs. TAIR10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 50.8 bits (120), Expect = 3.0e-06
Identity = 25/87 (28.74%), Postives = 43/87 (49.43%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W +KYRPK ++D     +    L   ++   C H +F GPPG GK T   A+  Q FG +
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 286 AMEVKEVDRVFALKSEMVGSIEVKVKE 313
             + + ++ + A     +  +  K+K+
Sbjct: 71  LYKSRVLE-LNASDDRGINVVRTKIKD 96

[Close]

BLAST of Carg06353 vs. TAIR10
Match: AT1G63160.1 (replication factor C 2)

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-05
Identity = 66/273 (24.18%), Postives = 105/273 (38.46%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFG-- 285
           W +KYRP  + D + N      L+ +  +    + I  GPPG GK T I A+  +  G  
Sbjct: 17  WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTN 76

Query: 286 --EQAMEVKEVD----RVFALKSEMVGSIEVKVKESSHCVEV---NLSQTKGFE---KQV 345
             E  +E+   D     V   K +M    +V +    H V +     S T G +   ++ 
Sbjct: 77  YKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRT 136

Query: 346 IDQLIKETQSPLPCN---------HARCRVEVLEYIAKQQEFDLSRRMA----------- 405
           I+     T+  L CN          +RC +     ++ QQ   L R +            
Sbjct: 137 IEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQ--ILGRLLVVVAAEKVPYVP 196

Query: 406 ---ERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPK 462
              E I   +  ++RQA+ +L+A++     F   EN      +     V K IV      
Sbjct: 197 EGLEAIIFTADGDMRQALNNLQATF-SGFSFVNQENVFKVCDQPHPLHV-KNIVRNVLES 256

[Close]

BLAST of Carg06353 vs. Swiss-Prot
Match: sp|Q8VXX4|RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-30
Identity = 107/367 (29.16%), Postives = 165/367 (44.96%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W DKYRPK L+  I +   A +LKK+V E+ C H +F GP G GK+T+I A+L+Q +G  
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 286 AMEVKEVDRVFALKS-EMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLP 345
           A +VK  +R + + +      +E+    S++ VE+  S     ++ ++ ++IKE     P
Sbjct: 63  AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 346 --------------------------------------------CN---------HARCR 405
                                                       CN          +RC 
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182

Query: 406 ------------VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLF 465
                       V+VLE++AK++   L +  A RIA+ S  +LR+AI SLE    ++  F
Sbjct: 183 NVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPF 242

Query: 466 EEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELK 525
             ++      WE+ +A++A  +++EQSPK+L+ VRGK+ +L+   + P  I K L+ EL 
Sbjct: 243 TGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELL 302

Query: 526 KFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIA 527
           K LD EL+  V  + A Y                          MR        IE F+A
Sbjct: 303 KKLDSELKLEVCHWAAYYEHR-----------------------MRLGQKAIFHIEAFVA 346

[Close]

BLAST of Carg06353 vs. Swiss-Prot
Match: sp|Q852K3|RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-28
Identity = 105/367 (28.61%), Postives = 159/367 (43.32%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W DKYRPK L+    + + A  LKK+V E+ C H +F GP G GK+T++ A+++Q FG  
Sbjct: 3   WVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAG 62

Query: 286 AMEVKEVDRVFALKSEMVG-SIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLP 345
           A +VK  ++ + + +      IE+ +  S+H VE+N S     ++ V+ ++IKE     P
Sbjct: 63  ADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRP 122

Query: 346 --------------------------------------------CN---------HARCR 405
                                                       CN          +RC 
Sbjct: 123 IDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCL 182

Query: 406 ------------VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLF 465
                       V+VLE+I K++   L    A RIA  S  NLR+AI   E    +   F
Sbjct: 183 NVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPF 242

Query: 466 EEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELK 525
             ++      WE  ++++A  I++EQSPK+L+ VR K  +L+   + P  I K L+ EL 
Sbjct: 243 TSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAELL 302

Query: 526 KFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIA 527
           K LD +L+  +  + A Y   E K                    MR        +E F+A
Sbjct: 303 KKLDSDLKHEICHWAAHY---EHK--------------------MRLGSKAIFHLEAFVA 346

[Close]

BLAST of Carg06353 vs. Swiss-Prot
Match: sp|Q54BN3|RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=rfc3 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-24
Identity = 102/369 (27.64%), Postives = 160/369 (43.36%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W DKY+P  L+    +   +  LK +++     H +  GP G GK+T I A+L++ +G  
Sbjct: 3   WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62

Query: 286 AMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKE-TQSP-- 345
           A+++K   R F   +    +I++    S + +E+N  +   +++ VI  +IKE  QSP  
Sbjct: 63  ALKLKIDHRTFKHPTSS-KNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 122

Query: 346 -----------------------------------------LPCN---------HARC-- 405
                                                    L C+          +RC  
Sbjct: 123 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 182

Query: 406 -RV---------EVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFE 465
            RV         +VL  +A  ++FDL  ++A  +A  S  NLR A+  LE+   K   F+
Sbjct: 183 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 242

Query: 466 EDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKK 525
             E  LL  WE+ I+ + K   EEQSP +L IVRGKL +L+ + + P  IFKTL+ E+ K
Sbjct: 243 STELPLL-DWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK 302

Query: 526 FLDEELQRRV---ESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEF 527
            LD  ++  +    S+Y   +++  KP                             +E F
Sbjct: 303 KLDHNMKFEIIHWASYYEHRSQIGSKP--------------------------IFHLEAF 343

[Close]

BLAST of Carg06353 vs. Swiss-Prot
Match: sp|Q2TBV1|RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.4e-18
Identity = 93/366 (25.41%), Postives = 152/366 (41.53%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W DKYRP  L     +++ A +L+ +V+     H +  GP G GK+T I  +LR+ +G  
Sbjct: 4   WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63

Query: 286 AMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIK-------- 345
             +++   +     S+    IE+    S++ +EVN S     ++ VI +++K        
Sbjct: 64  VEKLRIEHQTITTPSKK--KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQL 123

Query: 346 ETQSP------------------------------------LPCN---------HARC-- 405
           ET S                                     L CN          +RC  
Sbjct: 124 ETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 183

Query: 406 -RV---------EVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFE 465
            RV          VL  + K++  +L  ++A R+A+ S  NLR+A+   EA   +   F 
Sbjct: 184 VRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFT 243

Query: 466 EDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKK 525
            D+    T WE  + + A  IV +Q+P++L  VRG+L +L+ + + P  I K L+ EL  
Sbjct: 244 ADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLH 303

Query: 526 FLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAK 527
             D +L+  V    A Y    +         G +A+                 +E F+AK
Sbjct: 304 NCDGQLKGEVAQMAAYYEHRLQL--------GSKAI---------------YHLEAFVAK 344

[Close]

BLAST of Carg06353 vs. Swiss-Prot
Match: sp|Q8R323|RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.4e-18
Identity = 93/366 (25.41%), Postives = 151/366 (41.26%), Query Frame = 0


Query: 226 WGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQ 285
           W DKYRP  L     +++ A +L+ +V+     H +  GP G GK+T I  +LR+ +G  
Sbjct: 4   WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63

Query: 286 AMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIK-------- 345
             +++   +     S+    IE+    S++ +EVN S     ++ VI +++K        
Sbjct: 64  VEKLRIEHQTITTPSKK--KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQL 123

Query: 346 ETQSP------------------------------------LPCN---------HARC-- 405
           ET S                                     L CN          +RC  
Sbjct: 124 ETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 183

Query: 406 -RV---------EVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFE 465
            RV          VL  + +++   L   +A R+A+ S  NLR+A+   EA   +   F 
Sbjct: 184 VRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFT 243

Query: 466 EDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKK 525
           ED+    T WE  + + A  IV +Q+P++L  VRG+L +L+ + + P  I K L+ EL  
Sbjct: 244 EDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLH 303

Query: 526 FLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAK 527
             D +L+  V    A Y    +         G +A+                 +E F+AK
Sbjct: 304 NCDGQLKGEVAQMAAYYEHRLQL--------GSKAI---------------YHLEAFVAK 344

[Close]

BLAST of Carg06353 vs. TrEMBL
Match: tr|A0A1S3AWH3|A0A1S3AWH3_CUCME (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 1.5e-158
Identity = 332/572 (58.04%), Postives = 371/572 (64.86%), Query Frame = 0


Query: 50  LAKLLARLNLFSRNSDLTEESLQAHNERIDDLD---KTPLKSSPYYRGLTDSSLAINYHH 109
           L KLLARL L SR+SDLTEESL+AHN+RI+DLD   KTP KSSPYYRGLTDSSLAINYHH
Sbjct: 45  LGKLLARLALLSRDSDLTEESLEAHNKRINDLDTLEKTP-KSSPYYRGLTDSSLAINYHH 104

Query: 110 GPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKE-WAPCL--------------------- 169
           GPL + P++   +T+ A +  S   ++VSK KE WAPCL                     
Sbjct: 105 GPLNSTPYNVTYATSAAPSTQS---SIVSKFKEYWAPCLRXXXXXXXXXXXXXXXXXXXX 164

Query: 170 ----IGKPNTKPPAHQQYETPTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVM 229
                                                                       
Sbjct: 165 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 224

Query: 230 YGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGH- 289
                              EKERY+WGD YRPK LEDFICN+KTA ELK++V+EKGCGH 
Sbjct: 225 XXXXXXXXXXXXXXXXXXXEKERYSWGDNYRPKFLEDFICNKKTAIELKEMVKEKGCGHY 284

Query: 290 YIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEV 349
           YIFEG PGVGKRTMIQAMLR+AFG Q++E+KEV +VF LKSEM+GSIEVKVKESSH VEV
Sbjct: 285 YIFEGAPGVGKRTMIQAMLREAFGNQSVEIKEVVKVFDLKSEMLGSIEVKVKESSHYVEV 344

Query: 350 NLSQTKGFEKQVIDQLIKETQSPLPCNHARCR---------------------------- 409
           N+SQTKGFEKQVI QL+KE+ SPLPCNHA CR                            
Sbjct: 345 NMSQTKGFEKQVIVQLMKESHSPLPCNHANCRGILLCEADQLSNETLMYVKWAIERNKGC 404

Query: 410 ---------------------------------VEVLEYIAKQQEFDLSRRMAERIADNS 469
                                            VEVLE+IAKQQ FDLS+R+AERIADNS
Sbjct: 405 TKIFFCCTDASKLHLLSSVCTLVHLSPPSKQEIVEVLEFIAKQQGFDLSKRLAERIADNS 464

Query: 470 KNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLK 529
           KNNLRQAIRSLEASWKKS+LF+EDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLK
Sbjct: 465 KNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLK 524

Query: 530 KLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIK 531
           KLIEYDVSPNFIF+TLVDELKKFLDEELQRRVE FYADY K+EEK FV+E+G+GEE V+K
Sbjct: 525 KLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGSGEETVVK 584

[Close]

BLAST of Carg06353 vs. TrEMBL
Match: tr|A0A0A0L960|A0A0A0L960_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127040 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 6.0e-110
Identity = 250/463 (54.00%), Postives = 284/463 (61.34%), Query Frame = 0


Query: 49  KLAKLLARLNLFSRNSDLTEESLQAHNERIDD---LDKTPLKSSPYYRGLTDSSLAINYH 108
           KL KLLARL   SR+SDLTEESL+AHN+RI+D   LDKTP KSSPYYRGLTDSSLAINYH
Sbjct: 43  KLGKLLARLAFLSRDSDLTEESLEAHNKRINDLDTLDKTP-KSSPYYRGLTDSSLAINYH 102

Query: 109 HGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEW-APCLIGK--------PNTKPPAHQ 168
           HGPL + P+H   +T+ A +  S   ++VSK K++ APCL  +        P   P  HQ
Sbjct: 103 HGPLNSTPYHVTYATSAAPSTQS---SIVSKFKDYMAPCLRKQQPQSPQTSPRKVPRQHQ 162

Query: 169 QYET---------------PTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMY 228
           + +T                                                        
Sbjct: 163 RIQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 222

Query: 229 GRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGH-Y 288
                             EKERY+WGD  RPKVLEDFICN+KTA ELK++V+EKGCGH Y
Sbjct: 223 XXXXXXXXXXXXXXXXXXEKERYSWGDSCRPKVLEDFICNKKTAIELKEMVKEKGCGHYY 282

Query: 289 IFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVN 348
           IFEG PGVGKRTMIQAMLRQAFG Q+ME+KEV +VF LKSEM+GSIEVKVKESSH VEVN
Sbjct: 283 IFEGAPGVGKRTMIQAMLRQAFGNQSMEIKEVVKVFDLKSEMLGSIEVKVKESSHYVEVN 342

Query: 349 LSQTKGFEKQVIDQLIKETQSPLPCNHARCR----------------------------- 408
           +SQTKGFEKQVI QL+KE+ SPLPCNHA CR                             
Sbjct: 343 MSQTKGFEKQVIVQLMKESHSPLPCNHANCRDQLSIETLMYIKWAMERYKGCSKIFFCCS 402

Query: 409 -------------------------VEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAI 430
                                    VEVLE+IAKQQ FDLS+R+AERIADNS+NNLRQAI
Sbjct: 403 DASKLLLLSSLCTLVRLSPPSKQEIVEVLEFIAKQQGFDLSKRLAERIADNSRNNLRQAI 462

[Close]

BLAST of Carg06353 vs. TrEMBL
Match: tr|M5XSE1|M5XSE1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025123mg PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.2e-94
Identity = 237/568 (41.73%), Postives = 317/568 (55.81%), Query Frame = 0


Query: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHN-----ERIDDLDKTPLKSSPYY-RGLTDSS 105
           W  K+ +L+ R      NS+LTE+SL+ +N     E + D D+   K SPYY RGLT  S
Sbjct: 64  WGRKIRRLIGRRG----NSELTEQSLEVYNKTLVAENVID-DERSSKYSPYYIRGLTYPS 123

Query: 106 LAINYHHGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGK-----PNTKPPA 165
           + +     P+   P H ++S+    T  S  ++   K++EW+ CL  +      N +P  
Sbjct: 124 IIV--PKDPIANTPGHESNSSAVTWTSISTFFSGF-KVREWSSCLGSRTKEYNKNLRPEM 183

Query: 166 HQQYETPTTTTVVGKTTSLAVSSSPEKIERWATEK------EEKLLRERLVMYGRREGGS 225
           +   +  T +TV     +   S   E IER    K      +EK LRER+    R +   
Sbjct: 184 YTTIKPSTHSTVNASPKNSETSLVEESIERKEVMKSSNEYNKEKPLRERVRAATRPKNEI 243

Query: 226 GVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGV 285
            V        A+KE Y W DKY+P  LEDFICN+  A +L+ +     CGH+IFEGPPGV
Sbjct: 244 KV-----MNEAQKE-YAWADKYQPLCLEDFICNKDKATQLQALARGGACGHFIFEGPPGV 303

Query: 286 GKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFE 345
           GKRTMI AMLR+AFG   +  +E  + F+LK EMVGSIEV VK+S   VEVNLS+ KG+E
Sbjct: 304 GKRTMIWAMLREAFGRDTIHAREEFKAFSLKGEMVGSIEVHVKQSPQHVEVNLSELKGYE 363

Query: 346 KQVIDQLIKETQ-----SPLPCNHARCR-------------------------------- 405
           K VI +L++ETQ       LPC    CR                                
Sbjct: 364 KHVIVELMRETQDKTTNKALPCGLDNCRAIILYEADKLSTDALLYIKWLLERYKGCNKVF 423

Query: 406 -----------------------------VEVLEYIAKQQEFDLSRRMAERIADNSKNNL 465
                                        V VL++IAKQ+  DL + +AER A+NSKNN 
Sbjct: 424 FCCSDVSKLQAIKSLCTVVELLPPSKTETVAVLKFIAKQEGIDLPQELAERFAENSKNNF 483

Query: 466 RQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE 525
             AIRS EA+WKK   F+E++  +LTGWED+IAD+AK ++EEQSPKQLYI+RGKL+ LI 
Sbjct: 484 CLAIRSFEATWKKCYPFKENQ-VILTGWEDNIADIAKNMIEEQSPKQLYIIRGKLQNLIV 543

Query: 526 YDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKPFVTEKGNGEEAVIKELHD 531
           + V P FIF++LV ELKK LD+ LQ R+ES Y +YN+ +E  F ++K + EE + K L+D
Sbjct: 544 HGVCPEFIFQSLVAELKKHLDDSLQDRIESMYDEYNRNDENMFESDKYDHEE-MSKRLND 603

[Close]

BLAST of Carg06353 vs. TrEMBL
Match: tr|A0A251QED1|A0A251QED1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G108000 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 6.6e-93
Identity = 237/586 (40.44%), Postives = 318/586 (54.27%), Query Frame = 0


Query: 46  WSTKLAKLLARLNLFSRNSDLTEESLQAHNE-----------------RIDDL------D 105
           W  K+ +L+ R      NS+LTE+SL+ +N+                  +DD       D
Sbjct: 52  WGRKIRRLIGRRG----NSELTEQSLEVYNKTLVAENVVNHHKRVGQISLDDYYKGEIDD 111

Query: 106 KTPLKSSPYY-RGLTDSSLAINYHHGPLTTGPHHYASSTTTAQTQTSLSYAVVSKLKEWA 165
           +   K SPYY RGLT  S+ +     P+   P H ++S+    T  S  ++   K++EW+
Sbjct: 112 ERSSKYSPYYIRGLTYPSIIV--PKDPIANTPGHESNSSAVTWTSISTFFSGF-KVREWS 171

Query: 166 PCLIGK-----PNTKPPAHQQYETPTTTTVVGKTTSLAVSSSPEKIERWATEK------E 225
            CL  +      N +P  +   +  T +TV     +   S   E IER    K      +
Sbjct: 172 SCLGSRTKEYNKNLRPEMYTTIKPSTHSTVNASPKNSETSLVEESIERKEVMKSSNEYNK 231

Query: 226 EKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLEDFICNRKTACELKK 285
           EK LRER+    R +    V        A+KE Y W DKY+P  LEDFICN+  A +L+ 
Sbjct: 232 EKPLRERVRAATRPKNEIKV-----MNEAQKE-YAWADKYQPLCLEDFICNKDKATQLQA 291

Query: 286 VVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKV 345
           +     CGH+IFEGPPGVGKRTMI AMLR+AFG   +  +E  + F+LK EMVGSIEV V
Sbjct: 292 LARGGACGHFIFEGPPGVGKRTMIWAMLREAFGRDTIHAREEFKAFSLKGEMVGSIEVHV 351

Query: 346 KESSHCVEVNLSQTKGFEKQVIDQLIKETQ-----SPLPCNHARCR-------------- 405
           K+S   VEVNLS+ KG+EK VI +L++ETQ       LPC    CR              
Sbjct: 352 KQSPQHVEVNLSELKGYEKHVIVELMRETQDKTTNKALPCGLDNCRAIILYEADKLSTDA 411

Query: 406 -----------------------------------------------VEVLEYIAKQQEF 465
                                                          V VL++IAKQ+  
Sbjct: 412 LLYIKWLLERYKGCNKVFFCCSDVSKLQAIKSLCTVVELLPPSKTETVAVLKFIAKQEGI 471

Query: 466 DLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEE 525
           DL + +AER A+NSKNN   AIRS EA+WKK   F+E++  +LTGWED+IAD+AK ++EE
Sbjct: 472 DLPQELAERFAENSKNNFCLAIRSFEATWKKCYPFKENQ-VILTGWEDNIADIAKNMIEE 531

Query: 526 QSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYADYNKMEEKP 531
           QSPKQLYI+RGKL+ LI + V P FIF++LV ELKK LD+ LQ R+ES Y +YN+ +E  
Sbjct: 532 QSPKQLYIIRGKLQNLIVHGVCPEFIFQSLVAELKKHLDDSLQDRIESMYDEYNRNDENM 591

[Close]

BLAST of Carg06353 vs. TrEMBL
Match: tr|B9IB37|B9IB37_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G178700v3 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.0e-85
Identity = 235/596 (39.43%), Postives = 312/596 (52.35%), Query Frame = 0


Query: 61  SRNSDLTEESLQAHNER---IDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTGP-HHY 120
           SR+S+LTEESL+AHN R   I+ L     K SPYY+GL D SL I+     L T P    
Sbjct: 114 SRHSNLTEESLEAHNRRQEAINILHDKNAKCSPYYKGLVDYSLIISRERHHLPTPPTSPC 173

Query: 121 ASSTTTAQTQTSLSYAVVSKLKEWAPC---------LIGKPNTKP--------------- 180
             S  TA T +SLS   + K++EW+ C         + GK N  P               
Sbjct: 174 RESHATAVTSSSLS-TFIFKMQEWSSCFSISSKSNNVKGKENNAPAAVIATSTDKIKPMK 233

Query: 181 -----PAHQQYETPTTTTVVGKTTSLAVSSSPEKIERWATEKEEKLLRERLVMYGRREGG 240
                P+H      + T+  G+TT   +      +       EEK LRER+         
Sbjct: 234 PRPAAPSHSASSFSSQTS--GRTT---LEKETRDVNALRVVTEEKPLRERVSESKPPAAA 293

Query: 241 SGVGVDGGGEAAE----------KERYTWGDKYRPKVLEDFICNRKTACELKKVVEEKGC 300
             +  D   +  +            ++T  +KY+PK L+DFICNR  A  ++ V+ +  C
Sbjct: 294 PSLTNDDHRDILDCPSTHDVMNIDRKFTLANKYQPKALKDFICNRDQAIRMQGVMRDFDC 353

Query: 301 GHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVFALKSEMVGSIEVKVKESSHCV 360
            H+IFEGP GVGKRTMI+AML++AFG++ ++ +E  + F LK E +GSI+V+VK SS  V
Sbjct: 354 NHFIFEGPAGVGKRTMIRAMLQEAFGQERVQAREECKSFNLKGEQIGSIQVRVKVSSQHV 413

Query: 361 EVNLSQTKGFEKQVIDQLIKETQ--------SPLPCNHAR----CR-------------- 420
           EVNLS  KG+EKQVI +LIKET         S  P N       CR              
Sbjct: 414 EVNLSDLKGYEKQVIVELIKETHNNHNKRIISNNPINPKSRLDDCRAIILYEADMLSTDA 473

Query: 421 -----------------------------------------------VEVLEYIAKQQEF 480
                                                          V+VLE+IA+Q+  
Sbjct: 474 LLYIKWVLERYKGFSKFFFCCNDVSRLQPIRSLCTVVQLLPPSKREVVQVLEFIAEQEAI 533

Query: 481 DLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKKIVEE 533
           +L   +AE+IAD SKNNLRQAIRS EASW  S  F ED+ ++LTGWEDDIA++AK +VEE
Sbjct: 534 ELPYPLAEKIADKSKNNLRQAIRSFEASWHGSYPFTEDQ-EILTGWEDDIANIAKDMVEE 593

The following BLAST results are available for this feature:

BLAST of Carg06353 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946202.1	6.0e-271	88.61	replication factor C subunit 3-like [Cucurbita moschata]	[more]
XP_022975501.1	1.1e-229	77.94	replication factor C subunit 3-like [Cucurbita maxima]	[more]
XP_011650816.1	4.1e-163	59.72	PREDICTED: replication factor C subunit 3-like [Cucumis sativus]	[more]
XP_008438224.1	2.3e-158	58.04	PREDICTED: replication factor C subunit 3-like [Cucumis melo]	[more]
XP_023539425.1	1.1e-155	91.35	uncharacterized protein LOC111800075 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg06353 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27740.1	1.2e-31	29.16	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	3.0e-06	30.86	replication factor C subunit 3	[more]
AT1G21690.3	3.0e-06	28.74	ATPase family associated with various cellular activities (AAA)	[more]
AT1G63160.1	1.9e-05	24.18	replication factor C 2	[more]

BLAST of Carg06353 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VXX4\|RFC3_ARATH	2.2e-30	29.16	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
sp\|Q852K3\|RFC5_ORYSJ	4.5e-28	28.61	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]
sp\|Q54BN3\|RFC3_DICDI	6.7e-24	27.64	Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=...	[more]
sp\|Q2TBV1\|RFC3_BOVIN	9.4e-18	25.41	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]
sp\|Q8R323\|RFC3_MOUSE	9.4e-18	25.41	Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1	[more]

BLAST of Carg06353 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWH3\|A0A1S3AWH3_CUCME	1.5e-158	58.04	replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4...	[more]
tr\|A0A0A0L960\|A0A0A0L960_CUCSA	6.0e-110	54.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127040 PE=4 SV=1	[more]
tr\|M5XSE1\|M5XSE1_PRUPE	1.2e-94	41.73	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025123m...	[more]
tr\|A0A251QED1\|A0A251QED1_PRUPE	6.6e-93	40.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G108000 PE=4 SV=1	[more]
tr\|B9IB37\|B9IB37_POPTR	1.0e-85	39.43	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G178700v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

Vocabulary: **INTERPRO**
Term	Definition
IPR008921	DNA_pol3_clamp-load_cplx_C
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06353-RA	Carg06353-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 463..483
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 224..370 e-value: 1.6E-20 score: 75.8
None	No IPR available	GENE3D	G3DSA:1.20.272.10		coord: 409..483 e-value: 9.0E-10 score: 40.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 186..342 coord: 352..529
None	No IPR available	PANTHER	PTHR11669:SF13	SUBFAMILY NOT NAMED	coord: 186..342 coord: 352..529
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 224..284 coord: 311..398
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	SSF48019	post-AAA+ oligomerization domain-like	coord: 409..477

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06353	Cla021344	Watermelon (97103) v1	carwmB0961
Carg06353	Csa3G127040	Cucumber (Chinese Long) v2	carcuB0975
Carg06353	MELO3C006229	Melon (DHL92) v3.5.1	carmeB0941
Carg06353	ClCG05G002630	Watermelon (Charleston Gray)	carwcgB0935
Carg06353	CSPI03G09930	Wild cucumber (PI 183967)	carcpiB0998
Carg06353	Cucsa.257250	Cucumber (Gy14) v1	carcgyB1077
Carg06353	CmaCh00G006580	Cucurbita maxima (Rimu)	carcmaB1319
Carg06353	CmaCh06G011640	Cucurbita maxima (Rimu)	carcmaB1325
Carg06353	CmoCh06G011920	Cucurbita moschata (Rifu)	carcmoB1288
Carg06353	Lsi05G019210	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06353	Cp4.1LG08g02250	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06353	CsGy3G010040	Cucumber (Gy14) v2	carcgybB0948
Carg06353	MELO3C006229.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06353	CsaV3_3G010080	Cucumber (Chinese Long) v3	carcucB1003
Carg06353	Cla97C05G083150	Watermelon (97103) v2	carwmbB1008
Carg06353	Bhi01G000077	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06353	Silver-seed gourd	carcarB266
Carg06353	Silver-seed gourd	carcarB549
Carg06353	Cucumber (Gy14) v2	carcgybB0949
Carg06353	Cucumber (Gy14) v1	carcgyB1079
Carg06353	Cucurbita maxima (Rimu)	carcmaB1320
Carg06353	Cucurbita maxima (Rimu)	carcmaB1321
Carg06353	Cucurbita moschata (Rifu)	carcmoB1284
Carg06353	Cucurbita moschata (Rifu)	carcmoB1285
Carg06353	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06353	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06353	Wild cucumber (PI 183967)	carcpiB0999
Carg06353	Cucumber (Chinese Long) v2	carcuB0976
Carg06353	Cucumber (Chinese Long) v3	carcucB1004
Carg06353	Bottle gourd (USVL1VR-Ls)	carlsiB875
Carg06353	Melon (DHL92) v3.5.1	carmeB0938
Carg06353	Melon (DHL92) v3.6.1	carmedB0944
Carg06353	Watermelon (Charleston Gray)	carwcgB0937
Carg06353	Watermelon (97103) v1	carwmB0963
Carg06353	Watermelon (97103) v2	carwmbB1010
Carg06353	Wax gourd	carwgoB1113