Cla97C05G083150 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G083150
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	replication factor C subunit 3-like
Location	Cla97Chr05 : 2359421 .. 2362993 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTCTTTAGTTTTTAAATATTAGTTTTGATTTCAAAGACATTTTCTGAGAAGTATAGAAAGGAAAGAAAAACGTCCGTATAGGAAAAAAAAGAGCATAATTACACTTGTGCTACATTTGAACAAAAGGATACAATTTTTTTTAATAATAAATGTTAAAATTTCATTTTATCAAGAAATTTCTCTTTAATATTTTTTTTCAAAAAAAAAAAGCCAAATTTTGTTTAAGTTAACGTTGAAATTCTCATACTCCACGTACTATAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTATTAGTAATAACATATTAAGCTAAATATTAAATAAAGTACAATTTAAGAACATGAAACTATTTTAACAAGAAATGATTTTTATTATGCTTAATAATGAAAATAGATTGTGGAAGTGTTGGAGTTCATAGCAAAACAACAAGGATTCGACTTGTCGAAACGATTGGCTGAGAGAATTGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGGTTAGGGATTAAATTAAATTCTCAGATTATTTTTAGGTTTTATTCTGATGAATTAATTTAGGGTAATTTGATGGTGAAATTATTAATGATTTGCAGTCAATTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCAGACGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTAATTAACTAACTATATCTTAGAAGAATTTTCTTAAACTTTATTTAATTTTAAAACTAATTTCTAATGACCTTTTCTCACAGCCATTTTTTACGTTACCACTTTAAAAGAGAATGATTTGAAATTGTGATATTATTTTGTTTTTAAAATTAAGTTCAAAAACTTTGATTTGTTATTACCTACTTTTTTGTGAATATTTTCAAAAACCTAGTTTTGAAATATATATATATATGTTATGTTTGGAGTTTGGCTAAGAGTTTGCTGAAAACCTTGTTAAAAAATGGTTAGAAAATAAGCTAACAAATAATTAATTAACTATATTTCCTATTTTAATTTTTTATTTATAATTTAATTTTAAGACTATTTTTAAATATAGCTAAAATAATCCGATGTCTCCCTACATTATATTATATTATATTATATTATATTATAGCAAAAGTGAATAATGGAGCTTCGATTAAGTACAAGTATTGTACATTTAAAATTAATGTTTAATTGTTTTTTTTTTTTTGTTCATTCACAGGTTGTATATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATGTCTCCCCCAATTTCATTTTTAGGGTAATTTTCTTTTTGTAATTTCCTTTTTATCTCTTTTTTTTAAAATTATTTTTAAATATATCAAAATGAGTCAAAATATTTATAAATATAACAAAATGTTATTATCTATCACTAATAGACAACAATAGATACTGATATACACTTGTACCTATCAGTGTTTATCGATTTCTATCAATGATAAACATAACATTTTCTTATATTTGTAAATATTACTAACAGTTTGCCATTCAAAACAATTACAATTATTATTATTATTATTTTTTAAAATTCTCTCTTCCATTCGTCAATATTACATTACTAGACAAGTAGGTCTTGGGGTAATTGTGTTGGGTAGCATTTCTAGGCATAATAATTAAGTGTACAACAATATTTTGAAAAAAATTGTAAATATAGCAAATTAAAATCTATCACTGATAGACCCATACTAGTGATATGGTCTATCATTGATAGACAAATCTATCACTGGTAGACTTCGATAGCATAATCCAATTTTTATATATATATATAAATTCTTTTGAGACTAATGACTATATTTGTAATTGCTAATAAGTCTTACTCACAAACAATTAATTAATTTCCAAAGAATTATTCAAATTATCATGCTAAAACGTCAATAGGTTTAATATTTGATTTCCACTCCTACAATCATATAGAGAAAAAAAAAAAAAAACTTTTCTACATTTATAAATAAGTGAAAATTGCAAATATTGCAATTAGGTCAAAATAGATATAACAAAATTTAGATTATATATTTTCAAAGTATACCAATAATAGATCATATTGTTGATAGAAGTCTATCATTGATAGATTTGACTATATTTGCAATTTTTTAAAAATATTATTATAAACTTATGTATTATCTCTTAAAGTGCTACTTACTGCAATTACTTTATAAATAATTATCAACCACATTTGTTGCGGTCATTCTATTTAATTTCTCGTAATTTAGTTTTCTCTCTCTCATTTATCTAATGGATGTTCATGTGCAGACTCTAGTAGATGAATTAAAGAAGTTTTTAGACGAAGAACTACAACGTCGAGTTGAAGGTTTCTATGCTGATTATAATGTAAGTTTCTAATTTCTTTTATTATAAATTAAATTTGTGCATGCCTAGCTAGTACAAGATTTGTTAATGTTAGTGCCATTTTATTATAAAGTAATTTTTTTTCTTTTTCTATAAATTGAGAAATAAAATGTGAATGAAATATTCAAAGAATAATATTAATGTAGATGTTAATTTGATTTTCAGAAAATGGAGGAAAAATCATTTGTCGGTGAAAGAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGGCAGCATGATCCTATGCGAAAGAATGTTAACCACTTCTTGAAGATTGAAGGTAATCTTAATTAAGTGAAAATTGTTTTTTTTTTTTTTCGATTTAATTTTCATTTAGTATTTAAATTTTTAAATATTACATTTTTAGTCCAATTTTAAAGTTTATTTCAATTTAGTTTATAAGTTTCAAATGTTACAATTTTATCCTTAAATTTGAGCTTTGTTTCAATTTATTTCTTAGATTTATCAAATTTTACACTTTTAACATCAAATTTTCATTAAATACTCATTTAAGTTTTTTTTTTTGGCTTTCATGTCAATTAATTAATTTAAAATATATAATTATGAATTAGATTTTTAAAATTAATTTTACGTAAATTTGAATATTTTATTGTATTTTACATATTTTGACCATTTCTGATCTATTTATATAAAATTTTAACTTCTTGAAATATTTCAAAAAGAAGATAAATATTTATTATGCTATTTGTTTAAATACTTTATATTAGTCATTTCAGAAACTAAAAGGAAACTGGTAAAGATTTTTGTTTCTTAATTTTTTATTTCTAAAAAATAATTTTATTTATTCAAAATTGCATTGGCTATATCTTTTCCTTTTTGAAAAAGACTTTTTAAACCTTAGCTATCTTTATATAAAAACAATATAGCCTACTTATTAATAAACACAAAATTACATAAAGATTTTTAAAAGATTCTTCCAAGTAAGAGTACAAAAGAAAGAAAAATTCCAAAAAACAATAATGCTTTTTTTTTTTTTTGTGCCAAAAAACACAATAGGGGTCTGAATTTTTAAAGACTATTTTTTGGTGAAGAACTTTAAAAGTAAAAATTATTAAAGCACATATAATTAAATTCTCTCTTTATTTCTTCATTTTCTTGTACAGAATTTATAG

mRNA sequence

ATGATGTTGGAGTTCATAGCAAAACAACAAGGATTCGACTTGTCGAAACGATTGGCTGAGAGAATTGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGTCAATTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCAGACGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTTGTATATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATACTCTAGTAGATGAATTAAAGAAGTTTTTAGACGAAGAACTACAACGTCGAGTTGAAGGTTTCTATGCTGATTATAATAAAATGGAGGAAAAATCATTTGTCGGTGAAAGAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGGCAGCATGATCCTATGCGAAAGAATAATTTATAG

Coding sequence (CDS)

ATGATGTTGGAGTTCATAGCAAAACAACAAGGATTCGACTTGTCGAAACGATTGGCTGAGAGAATTGCCGACAATTCCAAGAACAACCTCCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGTCAATTGTTTGAAGAAGATGAGAATAAATTATTGACGGGTTGGGAAGATGATATTGCAGACGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTTGTATATAGTTCGTGGAAAACTTAAAAAGCTTATTGAATATGATACTCTAGTAGATGAATTAAAGAAGTTTTTAGACGAAGAACTACAACGTCGAGTTGAAGGTTTCTATGCTGATTATAATAAAATGGAGGAAAAATCATTTGTCGGTGAAAGAGGCAGTGGGGAAGAGGCAGTGGTCAAAGGGCAGCATGATCCTATGCGAAAGAATAATTTATAG

Protein sequence

MMLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDTLVDELKKFLDEELQRRVEGFYADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKNNL

Homology

[Close]

BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_011650816.1 (PREDICTED: replication factor C subunit 3-like [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 4.9e-66
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNS+NNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 433 VLEFIAKQQGFDLSKRLAERIADNSRNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 492

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 493 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 552

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNK+EEK FV E+GSGEEAV+KGQHD +RKN
Sbjct: 553 YADYNKLEEKVFVSEKGSGEEAVIKGQHDSIRKN 586

[Close]

BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 6.5e-66
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 436 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 495

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 496 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 555

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 556 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 589

[Close]

BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_022975501.1 (replication factor C subunit 3-like [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 6.7e-63
Identity = 131/154 (85.06%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LE+IAKQQ FDLS+R+AERIADNSKNNLRQAIRSLEASWKKS+LFEEDENKLLTGWEDD
Sbjct: 424 VLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDD 483

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVE F
Sbjct: 484 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESF 543

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNKMEEK FV ++G+GEEAV+K  HDPMRKN
Sbjct: 544 YADYNKMEEKPFVTDKGNGEEAVIKELHDPMRKN 577

[Close]

BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_023539426.1 (replication factor C subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 6.7e-63
Identity = 132/154 (85.71%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LE+IAKQQ FDLS+R+AERIADNSKNNLRQAIRSLEASWKKS+LFEEDENKLLTGWEDD
Sbjct: 310 VLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDD 369

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVE F
Sbjct: 370 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESF 429

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNKMEEK FV E+G GEEAV+K  HDPMRKN
Sbjct: 430 YADYNKMEEKPFVTEKGYGEEAVIKELHDPMRKN 463

[Close]

BLAST of Cla97C05G083150 vs. NCBI nr
Match: XP_022946202.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 131/154 (85.06%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LE+IAKQQ FDLS+R+AERIADNSKNNLRQAIRSLEASWKKS+LFEEDENKLLTGWEDD
Sbjct: 415 VLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDD 474

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQ RVE F
Sbjct: 475 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQHRVESF 534

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADYNKMEEK FV E+G+GEEAV+K  HDPMRKN
Sbjct: 535 YADYNKMEEKPFVTEKGNGEEAVIKELHDPMRKN 568

[Close]

BLAST of Cla97C05G083150 vs. TrEMBL
Match: tr|A0A1S3AWH3|A0A1S3AWH3_CUCME (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.3e-66
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLF+EDENKLLTGWEDD
Sbjct: 436 VLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDD 495

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD--------TLVDELKKFLDEELQRRVEGF 121
           IADVAKKIVEEQSPKQLYIVRGKLKKLIEYD        TLVDELKKFLDEELQRRVEGF
Sbjct: 496 IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGF 555

Query: 122 YADYNKMEEKSFVGERGSGEEAVVKGQHDPMRKN 148
           YADY K+EEK+FV ERGSGEE VVKGQ+DP+RKN
Sbjct: 556 YADYYKLEEKAFVSERGSGEETVVKGQNDPVRKN 589

[Close]

BLAST of Cla97C05G083150 vs. TrEMBL
Match: tr|A0A2I4FS27|A0A2I4FS27_9ROSI (uncharacterized protein LOC109001537 isoform X3 OS=Juglans regia OX=51240 GN=LOC109001537 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQ+G +L  RLAE+ A+ SKNNLRQAIRS EASW  +  F+ED  ++LTGWEDD
Sbjct: 536 VLEFIAKQEGIELPHRLAEKFAEKSKNNLRQAIRSFEASWLVNYPFQED-LEILTGWEDD 595

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDT--------LVDELKKFLDEELQRRVEGF 121
           IA++AK IVEEQSPKQLY++RG L+ LIE+D         LV ELKK   EEL+++++  
Sbjct: 596 IANIAKNIVEEQSPKQLYMIRGMLQNLIEHDVSPDSMFKFLVKELKKHAQEELKQQIDKL 655

Query: 122 YADYNKMEEKSFVGER----GSGEEAVVKGQHDPMRKN 148
           Y +Y++++E  F  ++     +  E   KG H+PMR+N
Sbjct: 656 YEEYSRVDENLFESQKLAFANNKSEETGKGAHEPMRRN 692

[Close]

BLAST of Cla97C05G083150 vs. TrEMBL
Match: tr|A0A2I4FS07|A0A2I4FS07_9ROSI (uncharacterized protein LOC109001537 isoform X2 OS=Juglans regia OX=51240 GN=LOC109001537 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQ+G +L  RLAE+ A+ SKNNLRQAIRS EASW  +  F+ED  ++LTGWEDD
Sbjct: 526 VLEFIAKQEGIELPHRLAEKFAEKSKNNLRQAIRSFEASWLVNYPFQED-LEILTGWEDD 585

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDT--------LVDELKKFLDEELQRRVEGF 121
           IA++AK IVEEQSPKQLY++RG L+ LIE+D         LV ELKK   EEL+++++  
Sbjct: 586 IANIAKNIVEEQSPKQLYMIRGMLQNLIEHDVSPDSMFKFLVKELKKHAQEELKQQIDKL 645

Query: 122 YADYNKMEEKSFVGER----GSGEEAVVKGQHDPMRKN 148
           Y +Y++++E  F  ++     +  E   KG H+PMR+N
Sbjct: 646 YEEYSRVDENLFESQKLAFANNKSEETGKGAHEPMRRN 682

[Close]

BLAST of Cla97C05G083150 vs. TrEMBL
Match: tr|A0A2I4FS03|A0A2I4FS03_9ROSI (uncharacterized protein LOC109001537 isoform X1 OS=Juglans regia OX=51240 GN=LOC109001537 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQ+G +L  RLAE+ A+ SKNNLRQAIRS EASW  +  F+ED  ++LTGWEDD
Sbjct: 536 VLEFIAKQEGIELPHRLAEKFAEKSKNNLRQAIRSFEASWLVNYPFQED-LEILTGWEDD 595

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDT--------LVDELKKFLDEELQRRVEGF 121
           IA++AK IVEEQSPKQLY++RG L+ LIE+D         LV ELKK   EEL+++++  
Sbjct: 596 IANIAKNIVEEQSPKQLYMIRGMLQNLIEHDVSPDSMFKFLVKELKKHAQEELKQQIDKL 655

Query: 122 YADYNKMEEKSFVGER----GSGEEAVVKGQHDPMRKN 148
           Y +Y++++E  F  ++     +  E   KG H+PMR+N
Sbjct: 656 YEEYSRVDENLFESQKLAFANNKSEETGKGAHEPMRRN 692

[Close]

BLAST of Cla97C05G083150 vs. TrEMBL
Match: tr|A0A2I4FS28|A0A2I4FS28_9ROSI (uncharacterized protein LOC109001537 isoform X4 OS=Juglans regia OX=51240 GN=LOC109001537 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFIAKQ+G +L  RLAE+ A+ SKNNLRQAIRS EASW  +  F+ED  ++LTGWEDD
Sbjct: 536 VLEFIAKQEGIELPHRLAEKFAEKSKNNLRQAIRSFEASWLVNYPFQED-LEILTGWEDD 595

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDT--------LVDELKKFLDEELQRRVEGF 121
           IA++AK IVEEQSPKQLY++RG L+ LIE+D         LV ELKK   EEL+++++  
Sbjct: 596 IANIAKNIVEEQSPKQLYMIRGMLQNLIEHDVSPDSMFKFLVKELKKHAQEELKQQIDKL 655

Query: 122 YADYNKMEEKSFVGER----GSGEEAVVKGQHDPMRKN 148
           Y +Y++++E  F  ++     +  E   KG H+PMR+N
Sbjct: 656 YEEYSRVDENLFESQKLAFANNKSEETGKGAHEPMRRN 692

[Close]

BLAST of Cla97C05G083150 vs. Swiss-Prot
Match: sp|Q8VXX4|RFC3_ARATH (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEF+AK++   L +  A RIA+ S  +LR+AI SLE    ++  F  ++      WE+ 
Sbjct: 197 VLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEY 256

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKL--------IEYDTLVDELKKFLDEELQRRVEGF 118
           +A++A  +++EQSPK+L+ VRGK+ +L        +    L+ EL K LD EL+  V  +
Sbjct: 257 VAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHW 316

[Close]

BLAST of Cla97C05G083150 vs. Swiss-Prot
Match: sp|Q54BN3|RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=rfc3 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-08
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +L  +A  + FDL  +LA  +A  S  NLR A+  LE+   K   F+  E  LL  WE+ 
Sbjct: 195 VLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTELPLL-DWENY 254

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIE--------YDTLVDELKKFLDEELQRRVEGF 121
           I+ + K   EEQSP +L IVRGKL +L+         + TL+ E+ K LD  ++  +  +
Sbjct: 255 ISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHW 314

Query: 122 YADYNKMEEKSFVGER 130
            + Y   E +S +G +
Sbjct: 315 ASYY---EHRSQIGSK 326

[Close]

BLAST of Cla97C05G083150 vs. Swiss-Prot
Match: sp|P40938|RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-07
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +L  + K++G +L  +LA R+A+ S  NLR+A+   EA   +   F  D+    T WE  
Sbjct: 195 VLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVY 254

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDTLVDELKKFLDEELQRRVEG 113
           + + A  IV +Q+P++L  VRG+L +L+ +    + + K L  EL    +G
Sbjct: 255 LRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDG 305

[Close]

BLAST of Cla97C05G083150 vs. Swiss-Prot
Match: sp|Q2TBV1|RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-07
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +L  + K++G +L  +LA R+A+ S  NLR+A+   EA   +   F  D+    T WE  
Sbjct: 195 VLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVY 254

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIEYDTLVDELKKFLDEELQRRVEG 113
           + + A  IV +Q+P++L  VRG+L +L+ +    + + K L  EL    +G
Sbjct: 255 LRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDG 305

[Close]

BLAST of Cla97C05G083150 vs. Swiss-Prot
Match: sp|Q852K3|RFC5_ORYSJ (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-07
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEFI K++   L    A RIA  S  NLR+AI   E    +   F  ++      WE  
Sbjct: 197 VLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQY 256

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKLIE--------YDTLVDELKKFLDEELQRRVEGF 121
           ++++A  I++EQSPK+L+ VR K  +L+            L+ EL K LD +L+  +  +
Sbjct: 257 VSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHW 316

Query: 122 YADYNKMEEKSFVGER 130
            A Y   E K  +G +
Sbjct: 317 AAHY---EHKMRLGSK 329

[Close]

BLAST of Cla97C05G083150 vs. TAIR10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-11
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 2   MLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFEEDENKLLTGWEDD 61
           +LEF+AK++   L +  A RIA+ S  +LR+AI SLE    ++  F  ++      WE+ 
Sbjct: 197 VLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEY 256

Query: 62  IADVAKKIVEEQSPKQLYIVRGKLKKL--------IEYDTLVDELKKFLDEELQRRVEGF 118
           +A++A  +++EQSPK+L+ VRGK+ +L        +    L+ EL K LD EL+  V  +
Sbjct: 257 VAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLEVCHW 316

The following BLAST results are available for this feature:

BLAST of Cla97C05G083150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650816.1	4.9e-66	88.31	PREDICTED: replication factor C subunit 3-like [Cucumis sativus]	[more]
XP_008438224.1	6.5e-66	88.96	PREDICTED: replication factor C subunit 3-like [Cucumis melo]	[more]
XP_022975501.1	6.7e-63	85.06	replication factor C subunit 3-like [Cucurbita maxima]	[more]
XP_023539426.1	6.7e-63	85.71	replication factor C subunit 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946202.1	1.1e-62	85.06	replication factor C subunit 3-like [Cucurbita moschata]	[more]

BLAST of Cla97C05G083150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWH3\|A0A1S3AWH3_CUCME	4.3e-66	88.96	replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4...	[more]
tr\|A0A2I4FS27\|A0A2I4FS27_9ROSI	6.2e-33	51.90	uncharacterized protein LOC109001537 isoform X3 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4FS07\|A0A2I4FS07_9ROSI	6.2e-33	51.90	uncharacterized protein LOC109001537 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4FS03\|A0A2I4FS03_9ROSI	6.2e-33	51.90	uncharacterized protein LOC109001537 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4FS28\|A0A2I4FS28_9ROSI	6.2e-33	51.90	uncharacterized protein LOC109001537 isoform X4 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Cla97C05G083150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VXX4\|RFC3_ARATH	7.6e-10	36.29	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
sp\|Q54BN3\|RFC3_DICDI	3.2e-08	34.56	Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=...	[more]
sp\|P40938\|RFC3_HUMAN	4.6e-07	32.43	Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2	[more]
sp\|Q2TBV1\|RFC3_BOVIN	6.0e-07	32.43	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]
sp\|Q852K3\|RFC5_ORYSJ	6.0e-07	32.35	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]

BLAST of Cla97C05G083150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27740.1	4.2e-11	36.29	ATPase family associated with various cellular activities (AAA)	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009379	Holliday junction helicase complex
cellular_component	GO:0005657	replication fork
cellular_component	GO:0042575	DNA polymerase complex
cellular_component	GO:0005663	DNA replication factor C complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009378	four-way junction helicase activity
molecular_function	GO:0003689	DNA clamp loader activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G083150.1	Cla97C05G083150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..149
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 2..129
None	No IPR available	PANTHER	PTHR11669:SF13	SUBFAMILY NOT NAMED	coord: 2..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G083150	Cla021344	Watermelon (97103) v1	wmwmbB206
Cla97C05G083150	Csa3G127040	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G083150	ClCG05G002630	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G083150	CSPI03G09930	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G083150	Cucsa.257260	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G083150	CmaCh00G006580	Cucurbita maxima (Rimu)	cmawmbB005
Cla97C05G083150	CmoCh06G011920	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G083150	Lsi05G019210	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G083150	MELO3C006229.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G083150	Carg06353	Silver-seed gourd	carwmbB1008
Cla97C05G083150	CsaV3_3G010080	Cucumber (Chinese Long) v3	cucwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G083150	Watermelon (97103) v2	wmbwmbB131
Cla97C05G083150	Silver-seed gourd	carwmbB0229
Cla97C05G083150	Silver-seed gourd	carwmbB0647
Cla97C05G083150	Silver-seed gourd	carwmbB1130
Cla97C05G083150	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G083150	Cucumber (Gy14) v2	cgybwmbB437
Cla97C05G083150	Cucumber (Gy14) v1	cgywmbB622
Cla97C05G083150	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G083150	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G083150	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G083150	Cucurbita maxima (Rimu)	cmawmbB916
Cla97C05G083150	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G083150	Cucurbita moschata (Rifu)	cmowmbB350
Cla97C05G083150	Cucurbita moschata (Rifu)	cmowmbB890
Cla97C05G083150	Wild cucumber (PI 183967)	cpiwmbB485
Cla97C05G083150	Cucumber (Chinese Long) v3	cucwmbB478
Cla97C05G083150	Cucumber (Chinese Long) v2	cuwmbB460
Cla97C05G083150	Bottle gourd (USVL1VR-Ls)	lsiwmbB020
Cla97C05G083150	Melon (DHL92) v3.6.1	medwmbB116
Cla97C05G083150	Melon (DHL92) v3.5.1	mewmbB125
Cla97C05G083150	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G083150	Watermelon (Charleston Gray)	wcgwmbB264
Cla97C05G083150	Watermelon (97103) v1	wmwmbB398
Cla97C05G083150	Wax gourd	wgowmbB080
Cla97C05G083150	Wax gourd	wgowmbB180