Bhi01G000077 (gene) Wax gourd

Overview
NameBhi01G000077
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionreplication factor C subunit 3-like
Locationchr1 : 2054682 .. 2055697 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTCTCCTTATTTTCTCTATAAACCCCATTTCGCATCCCATCCTTTCTCTCTCCCTTTTCAAATGGAAACAAATATCAACCTCTTCTCTCATCTCCTCCGTCGTCGCCGCCACCACCTCCGGCTTCCAACTTGAACCCATCTCTGTCCATGGCCACACAACAACAACCAAAAGCCAATCCAACCCTCCGCCGTTCATTGTCGGATTCAGACCACGGCCGTCGCCGACGCCGCCGCGCCACCATCTCAACGACGTCGTCAAAATCGTCATGGAGTTCGAAGCTAGGGAAACTGCTTGCTCGTTTAGCCGTTTTGTCCCGAGACTCAGAGCTAACCGAAGAAAGCCTTGAAGCCCACAACAAACGAATTAATGAGCTCGATATCCTCGACAAAACACCCAAATCCAGCCCTTATTACCGTGGCCTAACCGATTCCTCCCTCGCCATTAATTACCATCATGGCCCTCTCAATTCTACCCCCGTCCACGTCACCACTACAACACCACGTGGTCCCCACTCTTATGCCACCTCAGCAGCCGCCTCCACTCAATCCTCCTTCGTCTCCAAATTGAAGGACTACTGGGCCCCATGCCTCCGTAAACAACAAGAACAAGAAGAACAAGAACAAGAACAACAACCCAGTAGTGGTCCCCACAATTCTTATAAAGAGCCACGTCAGCATCTGAGAATCCAGACGGTTACGACGAAGACGGCGTCGTTGTCGCCGGGATCATCGACGTCGGCGAAGAGAGAAAGTGGTGATGATGAAGTGGAGATCAGAAAGAAGCTGTTGAGGGAGAGATTAGTATCGAAGGGCGGACGGCGAGGAGGAGGTGGGGGCGGCGGCGGGGGAGTGGGGTGGTGGTGGAGATGGAAAAAGAGAGGTATAGTTGGGGGATAAGTTAGCCAAAAGCGTTGGAGGATTTTATATGCAATAAAAAAAGGGCAATGGAATTGAAGGAAATGGTAAAGGAAAAAGGAAGTGGGCGTTATTATATATTTGAAGGGGCGCCTGGA

mRNA sequence

ATCCTCTCCTTATTTTCTCTATAAACCCCATTTCGCATCCCATCCTTTCTCTCTCCCTTTTCAAATGGAAACAAATATCAACCTCTTCTCTCATCTCCTCCGTCGTCGCCGCCACCACCTCCGGCTTCCAACTTGAACCCATCTCTGTCCATGGCCACACAACAACAACCAAAAGCCAATCCAACCCTCCGCCGTTCATTGTCGGATTCAGACCACGGCCGTCGCCGACGCCGCCGCGCCACCATCTCAACGACGTCGTCAAAATCGTCATGGAGTTCGAAGCTAGGGAAACTGCTTGCTCGTTTAGCCGTTTTGTCCCGAGACTCAGAGCTAACCGAAGAAAGCCTTGAAGCCCACAACAAACGAATTAATGAGCTCGATATCCTCGACAAAACACCCAAATCCAGCCCTTATTACCGTGGCCTAACCGATTCCTCCCTCGCCATTAATTACCATCATGGCCCTCTCAATTCTACCCCCGTCCACGTCACCACTACAACACCACGTGGTCCCCACTCTTATGCCACCTCAGCAGCCGCCTCCACTCAATCCTCCTTCGTCTCCAAATTGAAGGACTACTGGGCCCCATGCCTCCGTAAACAACAAGAACAAGAAGAACAAGAACAAGAACAACAACCCAGTAGTGGTCCCCACAATTCTTATAAAGAGCCACGTCAGCATCTGAGAATCCAGACGGTTACGACGAAGACGGCGTCGTTGTCGCCGGGATCATCGACGTCGGCGAAGAGAGAAAGTGGTGATGATGAAGTGGAGATCAGAAAGAAGCTGTTGAGGGAGAGATTAGTATCGAAGGGCGGACGGCGAGGAGGAGGTGGGGGCGGCGGCGGGGGAGTGGGGTGGTGGTGGAGATGGAAAAAGAGAGGTATAGTTGGGGGATAAGTTAGCCAAAAGCGTTGGAGGATTTTATATGCAATAAAAAAAGGGCAATGGAATTGAAGGAAATGGTAAAGGAAAAAGGAAGTGGGCGTTATTATATATTTGAAGGGGCGCCTGGA

Coding sequence (CDS)

ATGGCCACACAACAACAACCAAAAGCCAATCCAACCCTCCGCCGTTCATTGTCGGATTCAGACCACGGCCGTCGCCGACGCCGCCGCGCCACCATCTCAACGACGTCGTCAAAATCGTCATGGAGTTCGAAGCTAGGGAAACTGCTTGCTCGTTTAGCCGTTTTGTCCCGAGACTCAGAGCTAACCGAAGAAAGCCTTGAAGCCCACAACAAACGAATTAATGAGCTCGATATCCTCGACAAAACACCCAAATCCAGCCCTTATTACCGTGGCCTAACCGATTCCTCCCTCGCCATTAATTACCATCATGGCCCTCTCAATTCTACCCCCGTCCACGTCACCACTACAACACCACGTGGTCCCCACTCTTATGCCACCTCAGCAGCCGCCTCCACTCAATCCTCCTTCGTCTCCAAATTGAAGGACTACTGGGCCCCATGCCTCCGTAAACAACAAGAACAAGAAGAACAAGAACAAGAACAACAACCCAGTAGTGGTCCCCACAATTCTTATAAAGAGCCACGTCAGCATCTGAGAATCCAGACGGTTACGACGAAGACGGCGTCGTTGTCGCCGGGATCATCGACGTCGGCGAAGAGAGAAAGTGGTGATGATGAAGTGGAGATCAGAAAGAAGCTGTTGAGGGAGAGATTAGTATCGAAGGGCGGACGGCGAGGAGGAGGTGGGGGCGGCGGCGGGGGAGTGGGGTGGTGGTGGAGATGGAAAAAGAGAGGTATAGTTGGGGGATAA

Protein sequence

MATQQQPKANPTLRRSLSDSDHGRRRRRRATISTTSSKSSWSSKLGKLLARLAVLSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVTTTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKQQEQEEQEQEQQPSSGPHNSYKEPRQHLRIQTVTTKTASLSPGSSTSAKRESGDDEVEIRKKLLRERLVSKGGRRGGGGGGGGGVGWWWRWKKRGIVGG
Homology
[Close]
BLAST of Bhi01G000077 vs. TrEMBL
Match: tr|A0A0A0L960|A0A0A0L960_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127040 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.9e-35
Identity = 90/129 (69.77%), Postives = 92/129 (71.32%), Query Frame = 0 

Query: 55  LSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 114
           LSRDS+LTEESLEAHNKRIN+LD LDKTPKSSPYYRGLTDSSLAINYHHGPLNSTP HVT
Sbjct: 54  LSRDSDLTEESLEAHNKRINDLDTLDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYHVT 113

Query: 115 TTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHNS-YKE 174
                    YATSAA STQSS VSK KDY APCLRK                P  S  K 
Sbjct: 114 ---------YATSAAPSTQSSIVSKFKDYMAPCLRK-----------QQPQSPQTSPRKV 162

Query: 175 PRQHLRIQT 183
           PRQH RIQT
Sbjct: 174 PRQHQRIQT 162

[Close]
BLAST of Bhi01G000077 vs. TrEMBL
Match: tr|A0A1S3AWH3|A0A1S3AWH3_CUCME (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.7e-33
Identity = 110/150 (73.33%), Postives = 117/150 (78.00%), Query Frame = 0 

Query: 1   MATQQQPKANPTLRRSLSD-SDHGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDS 60
           MATQQQ +  P+LRRSLSD      XXXXXXXXXXXXXXXXXXXX          LSRDS
Sbjct: 1   MATQQQLQ-QPSLRRSLSDXXXXXXXXXXXXXXXXXXXXXXXXXXLGKLLARLALLSRDS 60

Query: 61  ELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVTTTTPR 120
           +LTEESLEAHNKRIN+LD L+KTPKSSPYYRGLTDSSLAINYHHGPLNSTP +VT     
Sbjct: 61  DLTEESLEAHNKRINDLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVT----- 120

Query: 121 GPHSYATSAAASTQSSFVSKLKDYWAPCLR 150
               YATSAA STQSS VSK K+YWAPCLR
Sbjct: 121 ----YATSAAPSTQSSIVSKFKEYWAPCLR 140

[Close]
BLAST of Bhi01G000077 vs. TrEMBL
Match: tr|B9IB37|B9IB37_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G178700v3 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0 

Query: 56  SRDSELTEESLEAHNKRINELDIL-DKTPKSSPYYRGLTDSSLAIN--YHHGPLNSTPVH 115
           SR S LTEESLEAHN+R   ++IL DK  K SPYY+GL D SL I+   HH P       
Sbjct: 114 SRHSNLTEESLEAHNRRQEAINILHDKNAKCSPYYKGLVDYSLIISRERHHLP------- 173

Query: 116 VTTTTPRGP--HSYATSAAASTQSSFVSKLKDYWAPC 148
              T P  P   S+AT+  +S+ S+F+ K+++ W+ C
Sbjct: 174 ---TPPTSPCRESHATAVTSSSLSTFIFKMQE-WSSC 199

[Close]
BLAST of Bhi01G000077 vs. TrEMBL
Match: tr|B9T608|B9T608_RICCO (Replication factor C subunit, putative OS=Ricinus communis OX=3988 GN=RCOM_0160810 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 56  SRDSELTEESLEAHNKRINEL--------DILDKTPKSSPYYRGLTDSSLAINYHHGPLN 115
           S+ S+LTEESLEAHN+R  E         ++ DK  K SPYY+GLTD SL IN      +
Sbjct: 72  SKHSDLTEESLEAHNRRQEERAAFIFQRENVDDKNAKCSPYYKGLTDYSLIINREK---H 131

Query: 116 STPVHVTTTTPRGPHSYATSAAASTQSSFVSKLKDYWAPC 148
               H +++  R  H+   + ++S  S  ++K+++ W+ C
Sbjct: 132 QYLPHQSSSPGRESHATTVATSSSISSFMLTKMQE-WSSC 167

[Close]
BLAST of Bhi01G000077 vs. NCBI nr
Match: KGN56641.1 (hypothetical protein Csa_3G127040 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 90/129 (69.77%), Postives = 92/129 (71.32%), Query Frame = 0 

Query: 55  LSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 114
           LSRDS+LTEESLEAHNKRIN+LD LDKTPKSSPYYRGLTDSSLAINYHHGPLNSTP HVT
Sbjct: 54  LSRDSDLTEESLEAHNKRINDLDTLDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYHVT 113

Query: 115 TTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHNS-YKE 174
                    YATSAA STQSS VSK KDY APCLRK                P  S  K 
Sbjct: 114 ---------YATSAAPSTQSSIVSKFKDYMAPCLRK-----------QQPQSPQTSPRKV 162

Query: 175 PRQHLRIQT 183
           PRQH RIQT
Sbjct: 174 PRQHQRIQT 162

[Close]
BLAST of Bhi01G000077 vs. NCBI nr
Match: XP_011650816.1 (PREDICTED: replication factor C subunit 3-like [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 90/129 (69.77%), Postives = 92/129 (71.32%), Query Frame = 0 

Query: 55  LSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 114
           LSRDS+LTEESLEAHNKRIN+LD LDKTPKSSPYYRGLTDSSLAINYHHGPLNSTP HVT
Sbjct: 54  LSRDSDLTEESLEAHNKRINDLDTLDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYHVT 113

Query: 115 TTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHNS-YKE 174
                    YATSAA STQSS VSK KDY APCLRK                P  S  K 
Sbjct: 114 ---------YATSAAPSTQSSIVSKFKDYMAPCLRK-----------QQPQSPQTSPRKV 162

Query: 175 PRQHLRIQT 183
           PRQH RIQT
Sbjct: 174 PRQHQRIQT 162

[Close]
BLAST of Bhi01G000077 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 7.1e-33
Identity = 110/150 (73.33%), Postives = 117/150 (78.00%), Query Frame = 0 

Query: 1   MATQQQPKANPTLRRSLSD-SDHGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDS 60
           MATQQQ +  P+LRRSLSD      XXXXXXXXXXXXXXXXXXXX          LSRDS
Sbjct: 1   MATQQQLQ-QPSLRRSLSDXXXXXXXXXXXXXXXXXXXXXXXXXXLGKLLARLALLSRDS 60

Query: 61  ELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVTTTTPR 120
           +LTEESLEAHNKRIN+LD L+KTPKSSPYYRGLTDSSLAINYHHGPLNSTP +VT     
Sbjct: 61  DLTEESLEAHNKRINDLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVT----- 120

Query: 121 GPHSYATSAAASTQSSFVSKLKDYWAPCLR 150
               YATSAA STQSS VSK K+YWAPCLR
Sbjct: 121 ----YATSAAPSTQSSIVSKFKEYWAPCLR 140

[Close]
BLAST of Bhi01G000077 vs. NCBI nr
Match: XP_022946202.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 74/146 (50.68%), Postives = 84/146 (57.53%), Query Frame = 0 

Query: 56  SRDSELTEESLEAHNKRINELDILDKTP-KSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 115
           SR+S+LTEESL+AHN+RI   D LDKTP KSSPYYRGLTDSSLAINYHHGPL +      
Sbjct: 61  SRNSDLTEESLQAHNERI---DDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTT------ 120

Query: 116 TTTPRGPHSYATS-AAASTQSSF----VSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHN 175
                GPH YA+S   A TQ+S     VSKLK+ WAPCL                   H 
Sbjct: 121 -----GPHHYASSTTTAQTQTSLSYAVVSKLKE-WAPCL---------IGKPNTKPPAHQ 178

Query: 176 SYKEPRQHLRIQTVTTKTASLSPGSS 196
            Y+ P       TV  KT SL+  SS
Sbjct: 181 QYETP----TTTTVVGKTTSLAVSSS 178

[Close]
BLAST of Bhi01G000077 vs. NCBI nr
Match: XP_022974102.1 (uncharacterized protein LOC111472711 [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 56  SRDSELTEESLEAHNKRINELDILDKTP-KSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 115
           SR+S+LTEESL+AHN+RI   D LDKTP KSSPYYRGLTDSSLAINYHHGPL +T  HVT
Sbjct: 61  SRNSDLTEESLQAHNERI---DDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTT--HVT 120

Query: 116 TTTPRGPHSYATSAAASTQS-SFVSKLKDYWAPCL 149
           T           +   ++ S + VSKLK+ WAPCL
Sbjct: 121 TGXXXXXXXXXXAQTQTSLSYAVVSKLKE-WAPCL 149

The following BLAST results are available for this feature:
BLAST of Bhi01G000077 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi01G000077 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi01G000077 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L960|A0A0A0L960_CUCSA2.9e-3569.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127040 PE=4 SV=1[more]
tr|A0A1S3AWH3|A0A1S3AWH3_CUCME4.7e-3373.33replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4... [more]
tr|B9IB37|B9IB37_POPTR2.0e-0745.36Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G178700v3 PE=... [more]
tr|B9T608|B9T608_RICCO1.2e-0437.00Replication factor C subunit, putative OS=Ricinus communis OX=3988 GN=RCOM_01608... [more]
BLAST of Bhi01G000077 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56641.14.4e-3569.77hypothetical protein Csa_3G127040 [Cucumis sativus][more]
XP_011650816.14.4e-3569.77PREDICTED: replication factor C subunit 3-like [Cucumis sativus][more]
XP_008438224.17.1e-3373.33PREDICTED: replication factor C subunit 3-like [Cucumis melo][more]
XP_022946202.12.2e-1850.68replication factor C subunit 3-like [Cucurbita moschata][more]
XP_022974102.16.0e-1662.11uncharacterized protein LOC111472711 [Cucurbita maxima][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006259 DNA metabolic process
biological_process GO:0006260 DNA replication
biological_process GO:0008150 biological_process
cellular_component GO:0005663 DNA replication factor C complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
cellular_component GO:0042575 DNA polymerase complex
molecular_function GO:0003689 DNA clamp loader activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000077Bhi01M000077mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..236

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi01G000077Csa3G127040Cucumber (Chinese Long) v2cuwgoB270
Bhi01G000077MELO3C006229Melon (DHL92) v3.5.1mewgoB531
Bhi01G000077ClCG05G002630Watermelon (Charleston Gray)wcgwgoB428
Bhi01G000077CSPI03G09930Wild cucumber (PI 183967)cpiwgoB270
Bhi01G000077Cucsa.257250Cucumber (Gy14) v1cgywgoB523
Bhi01G000077CmaCh06G011640Cucurbita maxima (Rimu)cmawgoB1007
Bhi01G000077CmoCh06G011920Cucurbita moschata (Rifu)cmowgoB1006
Bhi01G000077Lsi05G019210Bottle gourd (USVL1VR-Ls)lsiwgoB445
Bhi01G000077Cp4.1LG08g02250Cucurbita pepo (Zucchini)cpewgoB1111
Bhi01G000077CsGy3G010040Cucumber (Gy14) v2cgybwgoB258
Bhi01G000077MELO3C006229.2Melon (DHL92) v3.6.1medwgoB532
Bhi01G000077Carg06353Silver-seed gourdcarwgoB1118
Bhi01G000077CsaV3_3G010080Cucumber (Chinese Long) v3cucwgoB273
Bhi01G000077Cla021344Watermelon (97103) v1wgowmB203
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi01G000077Wax gourdwgowgoB029
Bhi01G000077Cucumber (Gy14) v1cgywgoB728
Bhi01G000077Cucumber (Gy14) v2cgybwgoB531
Bhi01G000077Cucurbita maxima (Rimu)cmawgoB0329
Bhi01G000077Cucurbita maxima (Rimu)cmawgoB0475
Bhi01G000077Cucurbita moschata (Rifu)cmowgoB0318
Bhi01G000077Cucurbita moschata (Rifu)cmowgoB0474
Bhi01G000077Cucurbita pepo (Zucchini)cpewgoB0192
Bhi01G000077Cucurbita pepo (Zucchini)cpewgoB0784
Bhi01G000077Wild cucumber (PI 183967)cpiwgoB560
Bhi01G000077Cucumber (Chinese Long) v3cucwgoB572
Bhi01G000077Cucumber (Chinese Long) v2cuwgoB555
Bhi01G000077Bottle gourd (USVL1VR-Ls)lsiwgoB046
Bhi01G000077Melon (DHL92) v3.6.1medwgoB107
Bhi01G000077Melon (DHL92) v3.5.1mewgoB106
Bhi01G000077Watermelon (Charleston Gray)wcgwgoB519
Bhi01G000077Watermelon (97103) v2wgowmbB180
Bhi01G000077Watermelon (97103) v2wgowmbB201
Bhi01G000077Watermelon (97103) v1wgowmB236
Bhi01G000077Silver-seed gourdcarwgoB0285
Bhi01G000077Silver-seed gourdcarwgoB0737