Bhi01M000077 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M000077
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	replication factor C subunit 3-like
Location	chr1 : 2054682 .. 2055697 (-)
Sequence length	1016

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTCTCCTTATTTTCTCTATAAACCCCATTTCGCATCCCATCCTTTCTCTCTCCCTTTTCAAATGGAAACAAATATCAACCTCTTCTCTCATCTCCTCCGTCGTCGCCGCCACCACCTCCGGCTTCCAACTTGAACCCATCTCTGTCCATGGCCACACAACAACAACCAAAAGCCAATCCAACCCTCCGCCGTTCATTGTCGGATTCAGACCACGGCCGTCGCCGACGCCGCCGCGCCACCATCTCAACGACGTCGTCAAAATCGTCATGGAGTTCGAAGCTAGGGAAACTGCTTGCTCGTTTAGCCGTTTTGTCCCGAGACTCAGAGCTAACCGAAGAAAGCCTTGAAGCCCACAACAAACGAATTAATGAGCTCGATATCCTCGACAAAACACCCAAATCCAGCCCTTATTACCGTGGCCTAACCGATTCCTCCCTCGCCATTAATTACCATCATGGCCCTCTCAATTCTACCCCCGTCCACGTCACCACTACAACACCACGTGGTCCCCACTCTTATGCCACCTCAGCAGCCGCCTCCACTCAATCCTCCTTCGTCTCCAAATTGAAGGACTACTGGGCCCCATGCCTCCGTAAACAACAAGAACAAGAAGAACAAGAACAAGAACAACAACCCAGTAGTGGTCCCCACAATTCTTATAAAGAGCCACGTCAGCATCTGAGAATCCAGACGGTTACGACGAAGACGGCGTCGTTGTCGCCGGGATCATCGACGTCGGCGAAGAGAGAAAGTGGTGATGATGAAGTGGAGATCAGAAAGAAGCTGTTGAGGGAGAGATTAGTATCGAAGGGCGGACGGCGAGGAGGAGGTGGGGGCGGCGGCGGGGGAGTGGGGTGGTGGTGGAGATGGAAAAAGAGAGGTATAGTTGGGGGATAAGTTAGCCAAAAGCGTTGGAGGATTTTATATGCAATAAAAAAAGGGCAATGGAATTGAAGGAAATGGTAAAGGAAAAAGGAAGTGGGCGTTATTATATATTTGAAGGGGCGCCTGGA

mRNA sequence

ATCCTCTCCTTATTTTCTCTATAAACCCCATTTCGCATCCCATCCTTTCTCTCTCCCTTTTCAAATGGAAACAAATATCAACCTCTTCTCTCATCTCCTCCGTCGTCGCCGCCACCACCTCCGGCTTCCAACTTGAACCCATCTCTGTCCATGGCCACACAACAACAACCAAAAGCCAATCCAACCCTCCGCCGTTCATTGTCGGATTCAGACCACGGCCGTCGCCGACGCCGCCGCGCCACCATCTCAACGACGTCGTCAAAATCGTCATGGAGTTCGAAGCTAGGGAAACTGCTTGCTCGTTTAGCCGTTTTGTCCCGAGACTCAGAGCTAACCGAAGAAAGCCTTGAAGCCCACAACAAACGAATTAATGAGCTCGATATCCTCGACAAAACACCCAAATCCAGCCCTTATTACCGTGGCCTAACCGATTCCTCCCTCGCCATTAATTACCATCATGGCCCTCTCAATTCTACCCCCGTCCACGTCACCACTACAACACCACGTGGTCCCCACTCTTATGCCACCTCAGCAGCCGCCTCCACTCAATCCTCCTTCGTCTCCAAATTGAAGGACTACTGGGCCCCATGCCTCCGTAAACAACAAGAACAAGAAGAACAAGAACAAGAACAACAACCCAGTAGTGGTCCCCACAATTCTTATAAAGAGCCACGTCAGCATCTGAGAATCCAGACGGTTACGACGAAGACGGCGTCGTTGTCGCCGGGATCATCGACGTCGGCGAAGAGAGAAAGTGGTGATGATGAAGTGGAGATCAGAAAGAAGCTGTTGAGGGAGAGATTAGTATCGAAGGGCGGACGGCGAGGAGGAGGTGGGGGCGGCGGCGGGGGAGTGGGGTGGTGGTGGAGATGGAAAAAGAGAGGTATAGTTGGGGGATAAGTTAGCCAAAAGCGTTGGAGGATTTTATATGCAATAAAAAAAGGGCAATGGAATTGAAGGAAATGGTAAAGGAAAAAGGAAGTGGGCGTTATTATATATTTGAAGGGGCGCCTGGA

Coding sequence (CDS)

ATGGCCACACAACAACAACCAAAAGCCAATCCAACCCTCCGCCGTTCATTGTCGGATTCAGACCACGGCCGTCGCCGACGCCGCCGCGCCACCATCTCAACGACGTCGTCAAAATCGTCATGGAGTTCGAAGCTAGGGAAACTGCTTGCTCGTTTAGCCGTTTTGTCCCGAGACTCAGAGCTAACCGAAGAAAGCCTTGAAGCCCACAACAAACGAATTAATGAGCTCGATATCCTCGACAAAACACCCAAATCCAGCCCTTATTACCGTGGCCTAACCGATTCCTCCCTCGCCATTAATTACCATCATGGCCCTCTCAATTCTACCCCCGTCCACGTCACCACTACAACACCACGTGGTCCCCACTCTTATGCCACCTCAGCAGCCGCCTCCACTCAATCCTCCTTCGTCTCCAAATTGAAGGACTACTGGGCCCCATGCCTCCGTAAACAACAAGAACAAGAAGAACAAGAACAAGAACAACAACCCAGTAGTGGTCCCCACAATTCTTATAAAGAGCCACGTCAGCATCTGAGAATCCAGACGGTTACGACGAAGACGGCGTCGTTGTCGCCGGGATCATCGACGTCGGCGAAGAGAGAAAGTGGTGATGATGAAGTGGAGATCAGAAAGAAGCTGTTGAGGGAGAGATTAGTATCGAAGGGCGGACGGCGAGGAGGAGGTGGGGGCGGCGGCGGGGGAGTGGGGTGGTGGTGGAGATGGAAAAAGAGAGGTATAGTTGGGGGATAA

Protein sequence

MATQQQPKANPTLRRSLSDSDHGRRRRRRATISTTSSKSSWSSKLGKLLARLAVLSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVTTTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKQQEQEEQEQEQQPSSGPHNSYKEPRQHLRIQTVTTKTASLSPGSSTSAKRESGDDEVEIRKKLLRERLVSKGGRRGGGGGGGGGVGWWWRWKKRGIVGG

Homology

[Close]

BLAST of Bhi01M000077 vs. TrEMBL
Match: tr|A0A0A0L960|A0A0A0L960_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127040 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.9e-35
Identity = 90/129 (69.77%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 55  LSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 114
           LSRDS+LTEESLEAHNKRIN+LD LDKTPKSSPYYRGLTDSSLAINYHHGPLNSTP HVT
Sbjct: 54  LSRDSDLTEESLEAHNKRINDLDTLDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYHVT 113

Query: 115 TTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHNS-YKE 174
                    YATSAA STQSS VSK KDY APCLRK                P  S  K 
Sbjct: 114 ---------YATSAAPSTQSSIVSKFKDYMAPCLRK-----------QQPQSPQTSPRKV 162

Query: 175 PRQHLRIQT 183
           PRQH RIQT
Sbjct: 174 PRQHQRIQT 162

[Close]

BLAST of Bhi01M000077 vs. TrEMBL
Match: tr|A0A1S3AWH3|A0A1S3AWH3_CUCME (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.7e-33
Identity = 110/150 (73.33%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 1   MATQQQPKANPTLRRSLSD-SDHGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDS 60
           MATQQQ +  P+LRRSLSD      XXXXXXXXXXXXXXXXXXXX          LSRDS
Sbjct: 1   MATQQQLQ-QPSLRRSLSDXXXXXXXXXXXXXXXXXXXXXXXXXXLGKLLARLALLSRDS 60

Query: 61  ELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVTTTTPR 120
           +LTEESLEAHNKRIN+LD L+KTPKSSPYYRGLTDSSLAINYHHGPLNSTP +VT     
Sbjct: 61  DLTEESLEAHNKRINDLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVT----- 120

Query: 121 GPHSYATSAAASTQSSFVSKLKDYWAPCLR 150
               YATSAA STQSS VSK K+YWAPCLR
Sbjct: 121 ----YATSAAPSTQSSIVSKFKEYWAPCLR 140

[Close]

BLAST of Bhi01M000077 vs. TrEMBL
Match: tr|B9IB37|B9IB37_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G178700v3 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 56  SRDSELTEESLEAHNKRINELDIL-DKTPKSSPYYRGLTDSSLAIN--YHHGPLNSTPVH 115
           SR S LTEESLEAHN+R   ++IL DK  K SPYY+GL D SL I+   HH P       
Sbjct: 114 SRHSNLTEESLEAHNRRQEAINILHDKNAKCSPYYKGLVDYSLIISRERHHLP------- 173

Query: 116 VTTTTPRGP--HSYATSAAASTQSSFVSKLKDYWAPC 148
              T P  P   S+AT+  +S+ S+F+ K+++ W+ C
Sbjct: 174 ---TPPTSPCRESHATAVTSSSLSTFIFKMQE-WSSC 199

[Close]

BLAST of Bhi01M000077 vs. TrEMBL
Match: tr|B9T608|B9T608_RICCO (Replication factor C subunit, putative OS=Ricinus communis OX=3988 GN=RCOM_0160810 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 56  SRDSELTEESLEAHNKRINEL--------DILDKTPKSSPYYRGLTDSSLAINYHHGPLN 115
           S+ S+LTEESLEAHN+R  E         ++ DK  K SPYY+GLTD SL IN      +
Sbjct: 72  SKHSDLTEESLEAHNRRQEERAAFIFQRENVDDKNAKCSPYYKGLTDYSLIINREK---H 131

Query: 116 STPVHVTTTTPRGPHSYATSAAASTQSSFVSKLKDYWAPC 148
               H +++  R  H+   + ++S  S  ++K+++ W+ C
Sbjct: 132 QYLPHQSSSPGRESHATTVATSSSISSFMLTKMQE-WSSC 167

[Close]

BLAST of Bhi01M000077 vs. NCBI nr
Match: KGN56641.1 (hypothetical protein Csa_3G127040 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 90/129 (69.77%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 55  LSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 114
           LSRDS+LTEESLEAHNKRIN+LD LDKTPKSSPYYRGLTDSSLAINYHHGPLNSTP HVT
Sbjct: 54  LSRDSDLTEESLEAHNKRINDLDTLDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYHVT 113

Query: 115 TTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHNS-YKE 174
                    YATSAA STQSS VSK KDY APCLRK                P  S  K 
Sbjct: 114 ---------YATSAAPSTQSSIVSKFKDYMAPCLRK-----------QQPQSPQTSPRKV 162

Query: 175 PRQHLRIQT 183
           PRQH RIQT
Sbjct: 174 PRQHQRIQT 162

[Close]

BLAST of Bhi01M000077 vs. NCBI nr
Match: XP_011650816.1 (PREDICTED: replication factor C subunit 3-like [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 90/129 (69.77%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 55  LSRDSELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 114
           LSRDS+LTEESLEAHNKRIN+LD LDKTPKSSPYYRGLTDSSLAINYHHGPLNSTP HVT
Sbjct: 54  LSRDSDLTEESLEAHNKRINDLDTLDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYHVT 113

Query: 115 TTTPRGPHSYATSAAASTQSSFVSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHNS-YKE 174
                    YATSAA STQSS VSK KDY APCLRK                P  S  K 
Sbjct: 114 ---------YATSAAPSTQSSIVSKFKDYMAPCLRK-----------QQPQSPQTSPRKV 162

Query: 175 PRQHLRIQT 183
           PRQH RIQT
Sbjct: 174 PRQHQRIQT 162

[Close]

BLAST of Bhi01M000077 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 7.1e-33
Identity = 110/150 (73.33%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 1   MATQQQPKANPTLRRSLSD-SDHGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDS 60
           MATQQQ +  P+LRRSLSD      XXXXXXXXXXXXXXXXXXXX          LSRDS
Sbjct: 1   MATQQQLQ-QPSLRRSLSDXXXXXXXXXXXXXXXXXXXXXXXXXXLGKLLARLALLSRDS 60

Query: 61  ELTEESLEAHNKRINELDILDKTPKSSPYYRGLTDSSLAINYHHGPLNSTPVHVTTTTPR 120
           +LTEESLEAHNKRIN+LD L+KTPKSSPYYRGLTDSSLAINYHHGPLNSTP +VT     
Sbjct: 61  DLTEESLEAHNKRINDLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVT----- 120

Query: 121 GPHSYATSAAASTQSSFVSKLKDYWAPCLR 150
               YATSAA STQSS VSK K+YWAPCLR
Sbjct: 121 ----YATSAAPSTQSSIVSKFKEYWAPCLR 140

[Close]

BLAST of Bhi01M000077 vs. NCBI nr
Match: XP_022946202.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 74/146 (50.68%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 56  SRDSELTEESLEAHNKRINELDILDKTP-KSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 115
           SR+S+LTEESL+AHN+RI   D LDKTP KSSPYYRGLTDSSLAINYHHGPL +      
Sbjct: 61  SRNSDLTEESLQAHNERI---DDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTT------ 120

Query: 116 TTTPRGPHSYATS-AAASTQSSF----VSKLKDYWAPCLRKXXXXXXXXXXXXXXXGPHN 175
                GPH YA+S   A TQ+S     VSKLK+ WAPCL                   H 
Sbjct: 121 -----GPHHYASSTTTAQTQTSLSYAVVSKLKE-WAPCL---------IGKPNTKPPAHQ 178

Query: 176 SYKEPRQHLRIQTVTTKTASLSPGSS 196
            Y+ P       TV  KT SL+  SS
Sbjct: 181 QYETP----TTTTVVGKTTSLAVSSS 178

[Close]

BLAST of Bhi01M000077 vs. NCBI nr
Match: XP_022974102.1 (uncharacterized protein LOC111472711 [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 56  SRDSELTEESLEAHNKRINELDILDKTP-KSSPYYRGLTDSSLAINYHHGPLNSTPVHVT 115
           SR+S+LTEESL+AHN+RI   D LDKTP KSSPYYRGLTDSSLAINYHHGPL +T  HVT
Sbjct: 61  SRNSDLTEESLQAHNERI---DDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTT--HVT 120

Query: 116 TTTPRGPHSYATSAAASTQS-SFVSKLKDYWAPCL 149
           T           +   ++ S + VSKLK+ WAPCL
Sbjct: 121 TGXXXXXXXXXXAQTQTSLSYAVVSKLKE-WAPCL 149

The following BLAST results are available for this feature:

BLAST of Bhi01M000077 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01M000077 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M000077 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L960\|A0A0A0L960_CUCSA	2.9e-35	69.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127040 PE=4 SV=1	[more]
tr\|A0A1S3AWH3\|A0A1S3AWH3_CUCME	4.7e-33	73.33	replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4...	[more]
tr\|B9IB37\|B9IB37_POPTR	2.0e-07	45.36	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G178700v3 PE=...	[more]
tr\|B9T608\|B9T608_RICCO	1.2e-04	37.00	Replication factor C subunit, putative OS=Ricinus communis OX=3988 GN=RCOM_01608...	[more]

BLAST of Bhi01M000077 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56641.1	4.4e-35	69.77	hypothetical protein Csa_3G127040 [Cucumis sativus]	[more]
XP_011650816.1	4.4e-35	69.77	PREDICTED: replication factor C subunit 3-like [Cucumis sativus]	[more]
XP_008438224.1	7.1e-33	73.33	PREDICTED: replication factor C subunit 3-like [Cucumis melo]	[more]
XP_022946202.1	2.2e-18	50.68	replication factor C subunit 3-like [Cucurbita moschata]	[more]
XP_022974102.1	6.0e-16	62.11	uncharacterized protein LOC111472711 [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003689	DNA clamp loader activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G000077	Bhi01G000077	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M000077.utr3p1	Bhi01M000077.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M000077	cds.Bhi01M000077	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M000077.exon1	Bhi01M000077.exon1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M000077.utr5p1	Bhi01M000077.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M000077	Bhi01M000077-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..236