Carg06339 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06339
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18-like
Location	Cucurbita_argyrosperma_scaffold_016 : 1045004 .. 1046213 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGGGATCGTGCAGCCAAGGTGTTCGACGGAATGTCTAGTCGAAACTGTAATTGAATAGTTGAGAGTTAGTTAAGGAGTTGGAATCTGGGTTGTTCTCCCTAAGCTTTTAGAACACCCAAACTTTGATTCCAAGCTTCCACTTCCACAGTTGCTCCTGAAATCTCAAGAAATGCTTAATGAATGAGATAGAGATCGGCTAAAAAGATACTATTTGCTTTGCTATTAATTCTTAAATTCTTAGAAGATCTCAATATATGATGAAGAAATGATAGTAGATTGTTGTTTTCATAATTGAAAAGGGGGTTTTCAATATAGGATGAGATGTTCTCTAGCCCAATAGAATAGAATTATGGGTACTGAAATGAACAAAAGCAATAGGCGGAGTGAAAAGGTGGAAGAATGGAAACTATAATTCTTTTTCAGCGTTAATCATTCATTCGTGTTTGAGGATTCCTGATCAGAATGATAGGTTTATCTTTTAGGAGTGTAAGTTATTCGTGTCGAGGATTGTTGGGAAGGAGTCCCATGTTGGCTAATTAAGGAGTTGATCATGAGTTTACAAGTAAGGAAAATATTTTCATTGGTATGAAGCCTTTTAGGGACACAAAAATCAAAGTTACGAGAACTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGTGATTCCTAACATTTGATCCTTTGAAATGTGGATATCTTTACGAATAAATGTCTAAAAACCACATGTTGGAGGACAATGTCGTACTTCGTAAGAGTAGAACATTTTATCTAAGGTTTCGACATGTTTTCATTTTGTAGAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAAAGGAGAAACTTCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTTATTCGTTTAA

mRNA sequence

ATGGCGTTTGGGATCGTGCAGCCAAGGTGTTCGACGGAATGTCTAGTCGAAACTAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAAAGGAGAAACTTCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTTATTCGTTTAA

Coding sequence (CDS)

ATGGCGTTTGGGATCGTGCAGCCAAGGTGTTCGACGGAATGTCTAGTCGAAACTAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAAAGGAGAAACTTCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTTATTCGTTTAA

Protein sequence

MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

Homology

[Close]

BLAST of Carg06339 vs. NCBI nr
Match: XP_022974777.1 (uncharacterized protein LOC111473501 [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 4.3e-78
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYF 60
           MAFGI+QPRCSTECLVETNSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYF
Sbjct: 1   MAFGILQPRCSTECLVETNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYF 60

Query: 61  SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI 120
           SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI
Sbjct: 61  SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI 120

Query: 121 SYDPPKSAKIEGKIEIVIDAIKDNGILFV 150
           SYDPPKSAKIEGKIEIVIDAIKDNGILFV
Sbjct: 121 SYDPPKSAKIEGKIEIVIDAIKDNGILFV 149

[Close]

BLAST of Carg06339 vs. NCBI nr
Match: XP_022937699.1 (uncharacterized protein LOC111444022 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-67
Identity = 134/149 (89.93%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYF 60
           ++  I  P  ST      NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYF
Sbjct: 46  LSIAIKPPSPSTH---NRNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYF 105

Query: 61  SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI 120
           SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI
Sbjct: 106 SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI 165

Query: 121 SYDPPKSAKIEGKIEIVIDAIKDNGILFV 150
           SYDPPKSAKIEGKIEIVIDAIKDNGILFV
Sbjct: 166 SYDPPKSAKIEGKIEIVIDAIKDNGILFV 191

[Close]

BLAST of Carg06339 vs. NCBI nr
Match: XP_023540956.1 (uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-67
Identity = 134/149 (89.93%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYF 60
           ++  I  P  ST      NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYF
Sbjct: 46  LSIAIKPPSPSTH---NRNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYF 105

Query: 61  SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI 120
           SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI
Sbjct: 106 SRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVI 165

Query: 121 SYDPPKSAKIEGKIEIVIDAIKDNGILFV 150
           SYDPPKSAKIEGKIEIVIDAIKDNGILFV
Sbjct: 166 SYDPPKSAKIEGKIEIVIDAIKDNGILFV 191

[Close]

BLAST of Carg06339 vs. NCBI nr
Match: XP_022974979.1 (uncharacterized protein LOC111473828 [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 3.4e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 19  NSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 78
           NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 59  NSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 118

Query: 79  SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVI 138
           SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVI
Sbjct: 119 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVI 178

Query: 139 DAIKDNGILFV 150
           DAIKDNGILFV
Sbjct: 179 DAIKDNGILFV 189

[Close]

BLAST of Carg06339 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 120/145 (82.76%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 5   IVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRF 64
           I  P  ST    + NS I+AAWTRRS+GE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRF
Sbjct: 50  IAAPPFSTH---DRNSFIRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRF 109

Query: 65  IHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDP 124
           IHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRIIGN+IAERCKEADVFV+SY+P
Sbjct: 110 IHAKVMHRATSKVVSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEP 169

Query: 125 PKSAKIEGKIEIVIDAIKDNGILFV 150
           PKS +IEGKIEIVID IK+NGILFV
Sbjct: 170 PKSERIEGKIEIVIDTIKENGILFV 191

[Close]

BLAST of Carg06339 vs. TAIR10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-50
Identity = 90/135 (66.67%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 15  LVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGT 74
           +V+ +S +QAAWTRRS+GE +KRPNRKSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR T
Sbjct: 52  IVKKDSFVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPT 111

Query: 75  SKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKI 134
           SKV+S A+TN +D+R ++PS  D+ ACR+IG LIAER  EADV+ +SY+P K  +IEGK+
Sbjct: 112 SKVISVATTNARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKL 171

Query: 135 EIVIDAIKDNGILFV 150
            IVID IK++GI+FV
Sbjct: 172 GIVIDTIKEHGIIFV 186

[Close]

BLAST of Carg06339 vs. TAIR10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-23
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 31  KGETSKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 90
           K + SK P++  S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++
Sbjct: 111 KEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVK 170

Query: 91  YSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI 147
             L S  D  AC  IG +++ER KEADV+  SY P    K EGKI  V+ ++ DNGI
Sbjct: 171 AVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of Carg06339 vs. TAIR10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-18
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 36  KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSP 95
           KR    ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 96  TDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI 147
            +  AC  +G ++A+R  E D+  + Y P K  KIEGK+++V+ A+ DNG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of Carg06339 vs. TAIR10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 31/97 (31.96%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 50  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIA 109
           Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 110 ERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI 147
           ER    D+  ++    K  +  GK++ VID++++ G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]

BLAST of Carg06339 vs. Swiss-Prot
Match: sp|Q5P316|RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.9e-07
Identity = 30/93 (32.26%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 56  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 115
           L V+ +   I+A+V+    S+V++AAST   D+R  LP+  +  A +++G LIAER K A
Sbjct: 26  LTVFRTNSHIYAQVIDGSGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAERAKAA 85

Query: 116 DVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 149
            V  +++D     +  G+++ + +A ++ G+ F
Sbjct: 86  GVEAVAFD-RAGFQYHGRVKALAEAAREGGLKF 117

[Close]

BLAST of Carg06339 vs. Swiss-Prot
Match: sp|A9BG02|RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 34/121 (28.10%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 36  KRPNRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 95
           K+ ++K+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 96  LRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGIL 149
           L+  L    D+NA + +G LIAE+ KE  +  I +D     K  GK++ + +A ++ G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of Carg06339 vs. Swiss-Prot
Match: sp|B5ZYV1|RL18_RHILW (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 31  KGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRY 90
           K   ++R NR     ++    RP  L V+ S + I+A+V+     K ++AAST  KDLR 
Sbjct: 5   KEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDLRG 64

Query: 91  SLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKI-EGKIEIVIDAIKDNGILF 149
           SL +  D  A  ++G L+AER  +A V  + +D  + A I  G+I+ + DA ++ G+ F
Sbjct: 65  SLKTGADTAAAALVGKLVAERASKAGVTDVVFD--RGAFIYHGRIKALADAAREGGLTF 120

[Close]

BLAST of Carg06339 vs. Swiss-Prot
Match: sp|Q11HR8|RL18_CHESB (50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-06
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 30  SKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 89
           SK   ++R  R   K +     RP  L VY S + I+A+V+       ++AAS+  KDLR
Sbjct: 3   SKVSVTRRAGRVRRKLKAVATERP-RLSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLR 62

Query: 90  YSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 149
             L +  D +A  ++G LIAER K+A +  + +D        G+++ + DA ++ G+ F
Sbjct: 63  EKLKTGADVDAAGVVGKLIAERAKKAGIDKVVFDRGPYI-YHGRVKALADAAREGGLEF 119

[Close]

BLAST of Carg06339 vs. Swiss-Prot
Match: sp|Q14JA4|RL18_FRAT1 (50S ribosomal protein L18 OS=Francisella tularensis subsp. tularensis (strain FSC 198) OX=393115 GN=rplR PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-06
Identity = 34/116 (29.31%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 36  KRPNRKSWKQRTDMYMRPF---VLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSL 95
           K+  R S  +RT + +R      L VY + R ++A+V+    S V+ AAST  KD++   
Sbjct: 3   KKTARLSRSKRTRIKLRELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKC 62

Query: 96  PSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 149
               +  +  I+G +IA+RCKE  +  +++D     K  G+++ +++A +++G+ F
Sbjct: 63  KYTGNVESAAIVGEIIADRCKEKGISQVAFD-RSGYKYHGRVKALVEAAREHGLQF 117

[Close]

BLAST of Carg06339 vs. TrEMBL
Match: tr|A0A1S3AVM4|A0A1S3AVM4_CUCME (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.3e-56
Identity = 114/146 (78.08%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 5   IVQPRCSTECLVETNSIIQ-AAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRR 64
           I  P  ST     T S+I+ AAWTRRS+GE +KR N+KSWKQRTDMYMRPFVLDVYFSRR
Sbjct: 43  IKAPSLSTH---NTKSLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRR 102

Query: 65  FIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYD 124
           FIHAKVMHRGTSKVVSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYD
Sbjct: 103 FIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYD 162

Query: 125 PPKSAKIEGKIEIVIDAIKDNGILFV 150
           PP   +I+ K+ IVID IK+NGI+FV
Sbjct: 163 PPSMERIQDKVGIVIDTIKENGIIFV 185

[Close]

BLAST of Carg06339 vs. TrEMBL
Match: tr|A0A0A0L7S5|A0A0A0L7S5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.0e-56
Identity = 108/126 (85.71%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 24  AAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 83
           AAWTRRS+GE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 84  NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKD 143
           NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SYDPP   +I+ K+ IVID IK+
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 144 NGILFV 150
           NGI+FV
Sbjct: 181 NGIIFV 186

[Close]

BLAST of Carg06339 vs. TrEMBL
Match: tr|A0A2P4N683|A0A2P4N683_QUESU (50s ribosomal protein l18 OS=Quercus suber OX=58331 GN=CFP56_48308 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.9e-51
Identity = 99/134 (73.88%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 16  VETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTS 75
           ++ +S IQAAWTRRS+GE +KRPNRKSWKQRTDM+MRPF+L+V+FS+RFIHAKVMHRGTS
Sbjct: 116 LKKDSFIQAAWTRRSRGELAKRPNRKSWKQRTDMFMRPFLLNVFFSKRFIHAKVMHRGTS 175

Query: 76  KVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIE 135
           KV+S A+TN KDLRYSLPS TD NACR++G LIAER KEADVF +SY+P K  +IEGK+ 
Sbjct: 176 KVISVATTNSKDLRYSLPSLTDHNACRVVGQLIAERSKEADVFAMSYEPRKDERIEGKLG 235

Query: 136 IVIDAIKDNGILFV 150
           IVID IK+NGI+FV
Sbjct: 236 IVIDTIKENGIIFV 249

[Close]

BLAST of Carg06339 vs. TrEMBL
Match: tr|A0A2R6RBA3|A0A2R6RBA3_ACTCH (50S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09400 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 97/135 (71.85%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 15  LVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGT 74
           L++   ++QAAWTRRS+GE +KRPNRKSWKQRTDMYMRPF+L+V+FS+RFIHAKVMHRGT
Sbjct: 52  LLKKQFVVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGT 111

Query: 75  SKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKI 134
           SKV+S A+TN KDLR +LPS TDDNACR++G LIAER KEADVF +SY+P K+ +IEGK+
Sbjct: 112 SKVISVATTNAKDLRNTLPSLTDDNACRVVGKLIAERSKEADVFAMSYEPNKNERIEGKL 171

Query: 135 EIVIDAIKDNGILFV 150
            IVID IK++GI+FV
Sbjct: 172 GIVIDTIKESGIIFV 186

[Close]

BLAST of Carg06339 vs. TrEMBL
Match: tr|M5XKK2|M5XKK2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019075mg PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.9e-50
Identity = 96/131 (73.28%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 19  NSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 78
           +S I+AAWTRRS+GE +KRPNRKSW QRTDMYMRPF+LDV+FS+RFIHAKVMHRGTSKV+
Sbjct: 96  DSFIRAAWTRRSRGEAAKRPNRKSWSQRTDMYMRPFLLDVFFSKRFIHAKVMHRGTSKVI 155

Query: 79  SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVI 138
           S ASTN KDLRYSL S  D++ACR+IGNLIAERCK+ADVF +S++P K+ +IEG++ IV+
Sbjct: 156 SVASTNSKDLRYSLTSLVDNDACRVIGNLIAERCKDADVFAMSFEPKKNERIEGRLGIVL 215

Query: 139 DAIKDNGILFV 150
           D IK+NGI+FV
Sbjct: 216 DTIKENGIMFV 226

The following BLAST results are available for this feature:

BLAST of Carg06339 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974777.1	4.3e-78	98.66	uncharacterized protein LOC111473501 [Cucurbita maxima]	[more]
XP_022937699.1	2.0e-67	89.93	uncharacterized protein LOC111444022 [Cucurbita moschata]	[more]
XP_023540956.1	2.0e-67	89.93	uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo]	[more]
XP_022974979.1	3.4e-67	99.24	uncharacterized protein LOC111473828 [Cucurbita maxima]	[more]
XP_022147050.1	2.4e-60	82.76	uncharacterized protein LOC111016081 [Momordica charantia]	[more]

BLAST of Carg06339 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20230.1	2.7e-50	66.67	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.3e-23	47.86	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	6.1e-18	39.64	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	3.8e-12	31.96	Ribosomal L18p/L5e family protein	[more]

BLAST of Carg06339 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5P316\|RL18_AROAE	7.9e-07	32.26	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
sp\|A9BG02\|RL18_PETMO	1.3e-06	28.10	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
sp\|B5ZYV1\|RL18_RHILW	1.3e-06	34.45	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
sp\|Q11HR8\|RL18_CHESB	2.3e-06	31.93	50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR P...	[more]
sp\|Q14JA4\|RL18_FRAT1	3.0e-06	29.31	50S ribosomal protein L18 OS=Francisella tularensis subsp. tularensis (strain FS...	[more]

BLAST of Carg06339 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVM4\|A0A1S3AVM4_CUCME	2.3e-56	78.08	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
tr\|A0A0A0L7S5\|A0A0A0L7S5_CUCSA	4.0e-56	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1	[more]
tr\|A0A2P4N683\|A0A2P4N683_QUESU	3.9e-51	73.88	50s ribosomal protein l18 OS=Quercus suber OX=58331 GN=CFP56_48308 PE=4 SV=1	[more]
tr\|A0A2R6RBA3\|A0A2R6RBA3_ACTCH	1.1e-50	71.85	50S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]
tr\|M5XKK2\|M5XKK2_PRUPE	1.9e-50	73.28	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019075mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036967	Ribosomal_S11_sf
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06339-RA	Carg06339-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 48..148 e-value: 1.7E-10 score: 41.2
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 14..149
IPR036967	Ribosomal protein S11 superfamily	GENE3D	G3DSA:3.30.420.80		coord: 20..149 e-value: 1.4E-15 score: 59.3
None	No IPR available	PANTHER	PTHR12899:SF7	SUBFAMILY NOT NAMED	coord: 14..149
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 43..146 e-value: 2.45164E-20 score: 80.2767
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 44..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06339	Csa3G127780	Cucumber (Chinese Long) v2	carcuB0975
Carg06339	MELO3C006255	Melon (DHL92) v3.5.1	carmeB0941
Carg06339	CSPI03G10180	Wild cucumber (PI 183967)	carcpiB0998
Carg06339	Cucsa.257030	Cucumber (Gy14) v1	carcgyB1077
Carg06339	CmaCh06G011690	Cucurbita maxima (Rimu)	carcmaB1325
Carg06339	Lsi05G019020	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06339	Cp4.1LG08g02290	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06339	CsGy3G010290	Cucumber (Gy14) v2	carcgybB0948
Carg06339	MELO3C006255.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06339	CsaV3_3G010320	Cucumber (Chinese Long) v3	carcucB1003
Carg06339	Cla97C05G083370	Watermelon (97103) v2	carwmbB1008
Carg06339	Bhi01G000104	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06339	Cucumber (Gy14) v1	carcgyB1079
Carg06339	Cucurbita maxima (Rimu)	carcmaB1319
Carg06339	Cucurbita maxima (Rimu)	carcmaB1320
Carg06339	Cucurbita maxima (Rimu)	carcmaB1321
Carg06339	Cucurbita maxima (Rimu)	carcmaB1326
Carg06339	Cucurbita moschata (Rifu)	carcmoB1284
Carg06339	Cucurbita moschata (Rifu)	carcmoB1285
Carg06339	Cucurbita moschata (Rifu)	carcmoB1288
Carg06339	Cucurbita moschata (Rifu)	carcmoB1289
Carg06339	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06339	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06339	Wild cucumber (PI 183967)	carcpiB0999
Carg06339	Cucumber (Chinese Long) v2	carcuB0976
Carg06339	Cucumber (Chinese Long) v3	carcucB1004
Carg06339	Bottle gourd (USVL1VR-Ls)	carlsiB875
Carg06339	Melon (DHL92) v3.5.1	carmeB0938
Carg06339	Melon (DHL92) v3.6.1	carmedB0944
Carg06339	Watermelon (Charleston Gray)	carwcgB0935
Carg06339	Watermelon (Charleston Gray)	carwcgB0937
Carg06339	Watermelon (97103) v1	carwmB0961
Carg06339	Watermelon (97103) v1	carwmB0963
Carg06339	Watermelon (97103) v2	carwmbB1010
Carg06339	Wax gourd	carwgoB1113
Carg06339	Silver-seed gourd	carcarB266
Carg06339	Silver-seed gourd	carcarB549
Carg06339	Cucumber (Gy14) v2	carcgybB0949