Cp4.1LG08g02290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g02290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal L18
LocationCp4.1LG08 : 2818083 .. 2819892 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGAAACTTTGCAAGGTTAAAAAGGTCAAATTTTACCCTAACTATTTAGCATATAGTTTACCCAATATTTCTTTTAGAGAGAGAATGCAACTATATAGACATAAGTTTAAAAAAGAGTAAAATCAAGAGATTCTATTAGAGGAGGAGACATACCAGTGGAAGTTGAAGCTGAAGCGAATCCTGGAGGCCGAACTGGGAGTATGGGAACGTTAAGCTCATCAATTCCCGGGTCGCCGTCGTGGTCAGCTTCACTTCATCCACCCTCCGCCACATTACTTTCAGGTTTCATTCAAAAACCTACTACTTCTCTTTCATGGCCTTCTTCGTTTTCCAAGCTCTCAATCGCCATTAAACCTCCTTCTCCTTCAACGCACAATAGAGTACGTTTTCTCTTCTTTACCCCTGTTTCTTTCTGCAAAGACAAAAAAAAAATAATTTATCTCATAAAAATAAAATCTCGATTTCGAAGAATGATGGAAATTCTACGATACCCATCGCGAAAAAATTGTGAAGTTGTTAGTCTTGTTTTGATGAGGGACTGAAATTGAATGAAATAGCATTCGAATCCTTCCCACTTCTTTTTGAGAGGGATGGCGTTTGGGATTTTGCAGCCAAGGTGTTCGACGGAATGTCTAGTCGAAACTGTAATGAATGGTTGAGAGTTAGTTAAGGAGTTGGAATCTGGGTTGTTCTCCCTAAGCTTTTAGAACACCCAAAGTTTGATTCCAAGCTTCCACCTTCCACAGTTGCTCCTGAAATCTCAAGAAATGCTTAATGAATGAGATAGAGATCGGCTAAAAAGATACTGTTTGCTATTATTCTATCTATTTAATCTATTTATGCATTAAATTCATAGAAGAAGATCTCAATCTATGATGAAGAAACGATAGTAGATTGTTGTTTTTATAATTGAAAAGGGGGTTTTCAATATAGGATGAGATGTTTTCTAGCCCAATAGAGTAGAATTATGGGCACTGAAATGAGCAAAAGCAATGGACGGAGTGAAAAAGTGGAATAACGGAAACTATAATTCTTTTTCAGCCTTAATCATTCGTGTTTGTGGATTCCTGATCGGTTTATCTTTTAGGAGAGTAGGTTATTCGTGTTGAGGATTGTGGGAGAGAGTCTCATGTTGACTAATTAAGGAGTTGATCATGAGTTTATCAGTAAGGAAAACATTTTCATTGGTACGAAGCCTTTTAGGGAAACAAAAATCAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATACAATTTGATCCTTTGAAAGGTGGATATCTTTACGAATAAATGTCTAGAAACCACATGTTGGAGGACAATGTCGTACTTCGTAAGAGTAGAACATTTTATCTAAGGTTTCGACGTGTTTTCATTTTGTAGAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAGAGGAGAAACTTCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTTATTCGTTTAACCTATCATATCCATCTAATAACAACCA

mRNA sequence

AATTGAAACTTTGCAAGGTTAAAAAGGTCAAATTTTACCCTAACTATTTAGCATATAGTTTACCCAATATTTCTTTTAGAGAGAGAATGCAACTATATAGACATAAGTTTAAAAAAGAGTAAAATCAAGAGATTCTATTAGAGGAGGAGACATACCAGTGGAAGTTGAAGCTGAAGCGAATCCTGGAGGCCGAACTGGGAGTATGGGAACGTTAAGCTCATCAATTCCCGGGTCGCCGTCGTGGTCAGCTTCACTTCATCCACCCTCCGCCACATTACTTTCAGGTTTCATTCAAAAACCTACTACTTCTCTTTCATGGCCTTCTTCGTTTTCCAAGCTCTCAATCGCCATTAAACCTCCTTCTCCTTCAACGCACAATAGAAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAGAGGAGAAACTTCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTTATTCGTTTAACCTATCATATCCATCTAATAACAACCA

Coding sequence (CDS)

ATGGGAACGTTAAGCTCATCAATTCCCGGGTCGCCGTCGTGGTCAGCTTCACTTCATCCACCCTCCGCCACATTACTTTCAGGTTTCATTCAAAAACCTACTACTTCTCTTTCATGGCCTTCTTCGTTTTCCAAGCTCTCAATCGCCATTAAACCTCCTTCTCCTTCAACGCACAATAGAAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAGAGGAGAAACTTCAAAAAGACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTTATTCGTTTAA

Protein sequence

MGTLSSSIPGSPSWSASLHPPSATLLSGFIQKPTTSLSWPSSFSKLSIAIKPPSPSTHNRNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Homology
[Close]
BLAST of Cp4.1LG08g02290 vs. Swiss-Prot
Match: RL18_RHILW (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplR PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1 

Query: 98  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 157
           L V+ S + I+A+V+     K ++AAST  KDLR SL +  D  A  ++G L+AER  +A
Sbjct: 29  LSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDLRGSLKTGADTAAAALVGKLVAERASKA 88

Query: 158 DVFVISYDPPKSAKI-EGKIEIVIDAIKDNGILF 191
            V  + +D  + A I  G+I+ + DA ++ G+ F
Sbjct: 89  GVTDVVFD--RGAFIYHGRIKALADAAREGGLTF 120

[Close]
BLAST of Cp4.1LG08g02290 vs. Swiss-Prot
Match: RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 30/93 (32.26%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 98  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 157
           L V+ +   I+A+V+    S+V++AAST   D+R  LP+  +  A +++G LIAER K A
Sbjct: 26  LTVFRTNSHIYAQVIDGSGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAERAKAA 85

Query: 158 DVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 191
            V  +++D     +  G+++ + +A ++ G+ F
Sbjct: 86  GVEAVAFD-RAGFQYHGRVKALAEAAREGGLKF 117

[Close]
BLAST of Cp4.1LG08g02290 vs. Swiss-Prot
Match: RL18_PETMO (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 34/121 (28.10%), Postives = 66/121 (54.55%), Query Frame = 1 

Query: 78  KRPNRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 137
           K+ ++K+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 138 LRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGIL 191
           L+  L    D+NA + +G LIAE+ KE  +  I +D     K  GK++ + +A ++ G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]
BLAST of Cp4.1LG08g02290 vs. Swiss-Prot
Match: RL18_FRATW (50S ribosomal protein L18 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplR PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-06
Identity = 34/116 (29.31%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 78  KRPNRKSWKQRTDMYMRPFV---LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSL 137
           K+  R S  +RT + +R      L VY + R ++A+V+    S V+ AAST  KD++   
Sbjct: 3   KKTARLSRSKRTRIKLRELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKC 62

Query: 138 PSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 191
               +  +  I+G +IA+RCKE  +  +++D     K  G+++ +++A +++G+ F
Sbjct: 63  KYTGNVESAAIVGEIIADRCKEKGISQVAFD-RSGYKYHGRVKALVEAAREHGLQF 117

[Close]
BLAST of Cp4.1LG08g02290 vs. Swiss-Prot
Match: RL18_FRATT (50S ribosomal protein L18 OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) GN=rplR PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-06
Identity = 34/116 (29.31%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 78  KRPNRKSWKQRTDMYMRPFV---LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSL 137
           K+  R S  +RT + +R      L VY + R ++A+V+    S V+ AAST  KD++   
Sbjct: 3   KKTARLSRSKRTRIKLRELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKC 62

Query: 138 PSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 191
               +  +  I+G +IA+RCKE  +  +++D     K  G+++ +++A +++G+ F
Sbjct: 63  KYTGNVESAAIVGEIIADRCKEKGISQVAFD-RSGYKYHGRVKALVEAAREHGLQF 117

[Close]
BLAST of Cp4.1LG08g02290 vs. TrEMBL
Match: A0A0A0L7S5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 145/192 (75.52%), Postives = 160/192 (83.33%), Query Frame = 1 

Query: 4   LSSSIPGSPSWSASLHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63
           LS+SIP S S        +ATL+S F+ KPT+S SW SSFSKLSI   AIK PS STHN 
Sbjct: 3   LSTSIPESSS-------SAATLVSSFLHKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 62

Query: 64  NSIIQAA-WTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123
             +I+AA WTRRSRGE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 63  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 122

Query: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183
           VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SYDPP   +I+ K+ IV
Sbjct: 123 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 182

Query: 184 IDAIKDNGILFV 192
           ID IK+NGI+FV
Sbjct: 183 IDTIKENGIIFV 186

[Close]
BLAST of Cp4.1LG08g02290 vs. TrEMBL
Match: A0A061EAU7_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.9e-55
Identity = 111/161 (68.94%), Postives = 134/161 (83.23%), Query Frame = 1 

Query: 35  TSLSWPSSFSKLSIAIK----PPSPSTHNRNSIIQAAWTRRSRGETSKRPNRKSWKQRTD 94
           TSLSW SSF   +I+I     PP+PS  N+ S +QAAWTRRSRGE +K+PNRKSWKQRTD
Sbjct: 30  TSLSWVSSFPSTNISINSFTLPPAPSL-NKGSFVQAAWTRRSRGEAAKQPNRKSWKQRTD 89

Query: 95  MYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLI 154
           MYMRPF+L+V+FS++FIHAKVMHRGTSKV+S A+TN KDLR +LPS TD NACRIIG LI
Sbjct: 90  MYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNTLPSLTDHNACRIIGKLI 149

Query: 155 AERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
           AER K+ADV+ +SYDP K  +IEGK+ IV+D IK+NGI+FV
Sbjct: 150 AERSKDADVYAMSYDPRKGERIEGKLGIVLDTIKENGIIFV 189

[Close]
BLAST of Cp4.1LG08g02290 vs. TrEMBL
Match: B9IQG4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 110/156 (70.51%), Postives = 130/156 (83.33%), Query Frame = 1 

Query: 36  SLSWPSSFSKLSIAIKPPSPSTHNRNSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRP 95
           SLSW  SF  + I+I    PS+ N+ S IQAAWTRRSRGE +K+PN+KSWKQRTDMYMRP
Sbjct: 50  SLSWGFSFPTIHISINNNHPSSLNKTSFIQAAWTRRSRGELAKKPNKKSWKQRTDMYMRP 109

Query: 96  FVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCK 155
           F+L+V+FSRRFI AKVMHRGTSKVVS A+TN KDLR+SLPS TD NACRI+G LIAER K
Sbjct: 110 FLLNVFFSRRFIQAKVMHRGTSKVVSVATTNAKDLRHSLPSLTDHNACRIVGKLIAERSK 169

Query: 156 EADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
           EADV+ +SY+P K  +IEGK+ IVID IK+NGI+FV
Sbjct: 170 EADVYAMSYEPRKDERIEGKLGIVIDTIKENGIIFV 205

[Close]
BLAST of Cp4.1LG08g02290 vs. TrEMBL
Match: M5XH65_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015567mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.4e-54
Identity = 107/160 (66.88%), Postives = 136/160 (85.00%), Query Frame = 1 

Query: 36  SLSWPSSFSKLSIAIK----PPSPSTHNRNSIIQAAWTRRSRGETSKRPNRKSWKQRTDM 95
           SLSW SSF  ++I+I     PP+P T N+NS+++AAWTRRSRGE +K+PNRKSWKQ+TDM
Sbjct: 6   SLSWVSSFPPVNISISSIADPPTP-TLNKNSVVRAAWTRRSRGEAAKKPNRKSWKQKTDM 65

Query: 96  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIA 155
           YMRPF+L+V+FS++FIHAKVMHRGTSKV+S A+TN KD+R +LPS TD NACR+IG LIA
Sbjct: 66  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDVRSNLPSLTDHNACRVIGRLIA 125

Query: 156 ERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
           ER KEADV+ +SY+P K  +IEGK+ IV+D IK+NGI+FV
Sbjct: 126 ERSKEADVYALSYEPRKDERIEGKLGIVLDTIKENGIIFV 164

[Close]
BLAST of Cp4.1LG08g02290 vs. TrEMBL
Match: A0A068ULF3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028699001 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.8e-54
Identity = 110/178 (61.80%), Postives = 142/178 (79.78%), Query Frame = 1 

Query: 22  SATLLSGFI---QKPTTSLSWPSSFSKLSIAIKPPSPST-----HNRNSIIQAAWTRRSR 81
           S TL S FI   ++   SLSW SS  KL+++I   SPS+     H +  +++AAWTRRSR
Sbjct: 12  SFTLASQFISTGKENPASLSWSSSLPKLNLSITTTSPSSPLNLLHKQTFVVEAAWTRRSR 71

Query: 82  GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYS 141
            E +K+PNRKSWKQRTDMYMRPF+L+V+FS+RFIHAKVMHRGTSKV+S A+TN KDLR +
Sbjct: 72  SEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVISVATTNAKDLRNT 131

Query: 142 LPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
           LPS TD+NACR+IG LIAER KEADVF I+Y+P K+ +IEG++ I++D I++NGI+FV
Sbjct: 132 LPSLTDNNACRVIGKLIAERSKEADVFAIAYEPDKNQRIEGRLAIILDTIQENGIIFV 189

[Close]
BLAST of Cp4.1LG08g02290 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-52
Identity = 108/181 (59.67%), Postives = 137/181 (75.69%), Query Frame = 1 

Query: 13  SWSASLHPPSATLL-SGFIQKPTTSLSWPSSFSKLSIAIKPP-SPSTHNRNSIIQAAWTR 72
           S + SL P  + L  S    K  +++SW SSF KLSI I    S     ++S +QAAWTR
Sbjct: 6   SSTCSLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSVISSPIVKKDSFVQAAWTR 65

Query: 73  RSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDL 132
           RSRGE +KRPNRKSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN +D+
Sbjct: 66  RSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDI 125

Query: 133 RYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF 192
           R ++PS  D+ ACR+IG LIAER  EADV+ +SY+P K  +IEGK+ IVID IK++GI+F
Sbjct: 126 RTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGIIF 185

[Close]
BLAST of Cp4.1LG08g02290 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-23
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 77  SKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLP 136
           SK P++  S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 137 SPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI 189
           S  D  AC  IG +++ER KEADV+  SY P    K EGKI  V+ ++ DNGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]
BLAST of Cp4.1LG08g02290 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 87.8 bits (216), Expect = 7.8e-18
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1 

Query: 78  KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSP 137
           KR    ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 138 TDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI 189
            +  AC  +G ++A+R  E D+  + Y P K  KIEGK+++V+ A+ DNG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]
BLAST of Cp4.1LG08g02290 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-12
Identity = 31/97 (31.96%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 92  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIA 151
           Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 152 ERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI 189
           ER    D+  ++    K  +  GK++ VID++++ G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]
BLAST of Cp4.1LG08g02290 vs. NCBI nr
Match: gi|659075660|ref|XP_008438261.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial-like [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 6.3e-70
Identity = 148/192 (77.08%), Postives = 162/192 (84.38%), Query Frame = 1 

Query: 4   LSSSIPGSPSWSASLHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63
           LS+SIP S S        SATLLS F+QKPT+S SW SSFSKLSI   AIK PS STHN 
Sbjct: 3   LSTSIPESSS--------SATLLSSFLQKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 62

Query: 64  NSIIQAA-WTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123
            S+I+AA WTRRSRGE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 63  KSLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 122

Query: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183
           VSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYDPP   +I+ K+ IV
Sbjct: 123 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 182

Query: 184 IDAIKDNGILFV 192
           ID IK+NGI+FV
Sbjct: 183 IDTIKENGIIFV 185

[Close]
BLAST of Cp4.1LG08g02290 vs. NCBI nr
Match: gi|778677646|ref|XP_011650830.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.7e-68
Identity = 145/192 (75.52%), Postives = 160/192 (83.33%), Query Frame = 1 

Query: 4   LSSSIPGSPSWSASLHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63
           LS+SIP S S        +ATL+S F+ KPT+S SW SSFSKLSI   AIK PS STHN 
Sbjct: 3   LSTSIPESSS-------SAATLVSSFLHKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 62

Query: 64  NSIIQAA-WTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123
             +I+AA WTRRSRGE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 63  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 122

Query: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183
           VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SYDPP   +I+ K+ IV
Sbjct: 123 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 182

Query: 184 IDAIKDNGILFV 192
           ID IK+NGI+FV
Sbjct: 183 IDTIKENGIIFV 186

[Close]
BLAST of Cp4.1LG08g02290 vs. NCBI nr
Match: gi|1009138276|ref|XP_015886499.1| (PREDICTED: 50S ribosomal protein L18 [Ziziphus jujuba])

HSP 1 Score: 226.5 bits (576), Expect = 4.0e-56
Identity = 115/179 (64.25%), Postives = 144/179 (80.45%), Query Frame = 1 

Query: 19  HPPSATLLSGFIQKPTTSLSWPSSFSKLSIAIK------PPSPSTHNRNSIIQAAWTRRS 78
           +PP +   S    KP+ SLSW +SF KL I++         S S+ N+NS IQAAWTRRS
Sbjct: 6   YPPFSCSSSSSAPKPS-SLSWSASFPKLPISLSVNNCSSASSLSSLNKNSFIQAAWTRRS 65

Query: 79  RGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRY 138
           RGE +KRP+RKSWKQRTDMYMRPF+LDV+FS+RF+HAKVMHRGTSKV+S ASTN KDLRY
Sbjct: 66  RGEAAKRPSRKSWKQRTDMYMRPFLLDVFFSKRFVHAKVMHRGTSKVISVASTNAKDLRY 125

Query: 139 SLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
           +LPS TDDNAC++IGNLIAER  EADV+ +S++P K+ +IEGK+ IV+D IK++GI+FV
Sbjct: 126 TLPSLTDDNACKVIGNLIAERSMEADVYAMSFEPKKNKRIEGKLGIVLDTIKESGIIFV 183

[Close]
BLAST of Cp4.1LG08g02290 vs. NCBI nr
Match: gi|694418515|ref|XP_009337259.1| (PREDICTED: 39S ribosomal protein L18, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 223.4 bits (568), Expect = 3.4e-55
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = 1 

Query: 18  LHPPSATLLSGFIQKPTTSLSWPSSFSKLSIAIK----PPSP-STHNRNSIIQAAWTRRS 77
           L PP +        KP+  LSW SSF    ++      PP+   T N++S I+AAWTRRS
Sbjct: 10  LPPPLSNPCGSGSVKPSR-LSWASSFPNFGVSFNCTTSPPNRIHTPNKDSFIRAAWTRRS 69

Query: 78  RGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRY 137
           RGE + RPNRKSW QRTDMYMRPF+LDV+FS+RFIHAKVMHRGTSKV+S ASTN KDLRY
Sbjct: 70  RGEAANRPNRKSWSQRTDMYMRPFLLDVFFSKRFIHAKVMHRGTSKVISVASTNSKDLRY 129

Query: 138 SLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
           SLPS TD+ ACR++GNLIAERCK+ADVF +S++P K+ +IEG++ IV+DAIKDNGI+FV
Sbjct: 130 SLPSLTDNEACRVVGNLIAERCKDADVFAMSFEPKKNERIEGRLGIVLDAIKDNGIIFV 187

[Close]
BLAST of Cp4.1LG08g02290 vs. NCBI nr
Match: gi|645252805|ref|XP_008232289.1| (PREDICTED: uncharacterized protein LOC103331444 [Prunus mume])

HSP 1 Score: 222.2 bits (565), Expect = 7.5e-55
Identity = 114/177 (64.41%), Postives = 139/177 (78.53%), Query Frame = 1 

Query: 20  PPSATLLSGFIQKPTTSLSWPSSFSKLSIA---IKPPSPSTH--NRNSIIQAAWTRRSRG 79
           PP   L +         LSW SSF KL I+   I  PS S H  N++S I+AAWTRRSRG
Sbjct: 29  PPPPLLSNPCGSVKPARLSWASSFPKLGISFNCITAPSSSLHTQNKDSFIRAAWTRRSRG 88

Query: 80  ETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSL 139
           E +KRPNRKSW QRTDMYMRPF+LDV+FS+RFIHAKVMHRGTSKV+S ASTN KDLRYSL
Sbjct: 89  EAAKRPNRKSWSQRTDMYMRPFLLDVFFSKRFIHAKVMHRGTSKVISVASTNSKDLRYSL 148

Query: 140 PSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV 192
            S  D++ACR+IGNLIAERCK+ADVF +S++P K+ +IEG++ IV+D I++NGI+FV
Sbjct: 149 TSLVDNDACRVIGNLIAERCKDADVFAMSFEPKKNERIEGRLGIVLDTIRENGIMFV 205

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g02290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_RHILW1.0e-0637.2350S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230... [more]
RL18_AROAE1.0e-0632.2650S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 S... [more]
RL18_PETMO1.7e-0628.1050S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplR... [more]
RL18_FRATW3.8e-0629.3150S ribosomal protein L18 OS=Francisella tularensis subsp. tularensis (strain WY... [more]
RL18_FRATT3.8e-0629.3150S ribosomal protein L18 OS=Francisella tularensis subsp. tularensis (strain SC... [more]
BLAST of Cp4.1LG08g02290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7S5_CUCSA1.9e-6875.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127780 PE=4 SV=1[more]
A0A061EAU7_THECC8.9e-5568.94Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_011555 PE=4 SV=1[more]
B9IQG4_POPTR1.2e-5470.51Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2[more]
M5XH65_PRUPE3.4e-5466.88Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015567mg PE=4 S... [more]
A0A068ULF3_COFCA5.8e-5461.80Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028699001 PE=4 SV=1[more]
BLAST of Cp4.1LG08g02290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20230.12.8e-5259.67 Ribosomal L18p/L5e family protein[more]
AT1G08845.23.6e-2348.67 Ribosomal L18p/L5e family protein[more]
AT3G22450.17.8e-1839.64 Ribosomal L18p/L5e family protein[more]
AT5G27820.14.9e-1231.96 Ribosomal L18p/L5e family protein[more]
BLAST of Cp4.1LG08g02290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075660|ref|XP_008438261.1|6.3e-7077.08PREDICTED: 39S ribosomal protein L18, mitochondrial-like [Cucumis melo][more]
gi|778677646|ref|XP_011650830.1|2.7e-6875.52PREDICTED: 39S ribosomal protein L18, mitochondrial [Cucumis sativus][more]
gi|1009138276|ref|XP_015886499.1|4.0e-5664.25PREDICTED: 50S ribosomal protein L18 [Ziziphus jujuba][more]
gi|694418515|ref|XP_009337259.1|3.4e-5563.69PREDICTED: 39S ribosomal protein L18, mitochondrial-like [Pyrus x bretschneideri... [more]
gi|645252805|ref|XP_008232289.1|7.5e-5564.41PREDICTED: uncharacterized protein LOC103331444 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02290.1Cp4.1LG08g02290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 90..190
score: 3.8
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 94..190
score: 8.5
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 35..191
score: 2.7
NoneNo IPR availablePANTHERPTHR12899:SF7SUBFAMILY NOT NAMEDcoord: 35..191
score: 2.7
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 87..188
score: 1.31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g02290Cucsa.257030Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g02290CmaCh06G011690Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g02290CmaCh06G012230Cucurbita maxima (Rimu)cmacpeB856
Cp4.1LG08g02290CmoCh06G012070Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g02290Csa3G127780Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g02290MELO3C006255Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g02290CSPI03G10180Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g02290Lsi05G019020Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g02290MELO3C006255.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g02290CsaV3_3G010320Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g02290Bhi01G000104Wax gourdcpewgoB1111
Cp4.1LG08g02290CsGy3G010290Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g02290Carg06339Silver-seed gourdcarcpeB1333
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g02290Cucumber (Gy14) v2cgybcpeB889
Cp4.1LG08g02290Melon (DHL92) v3.6.1cpemedB932
Cp4.1LG08g02290Silver-seed gourdcarcpeB0329
Cp4.1LG08g02290Silver-seed gourdcarcpeB0885
Cp4.1LG08g02290Cucumber (Chinese Long) v3cpecucB1077
Cp4.1LG08g02290Wax gourdcpewgoB1097
Cp4.1LG08g02290Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g02290Cucurbita pepo (Zucchini)cpecpeB344
Cp4.1LG08g02290Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g02290Cucumber (Gy14) v1cgycpeB0969
Cp4.1LG08g02290Cucurbita maxima (Rimu)cmacpeB021
Cp4.1LG08g02290Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g02290Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g02290Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g02290Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g02290Wild cucumber (PI 183967)cpecpiB879
Cp4.1LG08g02290Cucumber (Chinese Long) v2cpecuB877
Cp4.1LG08g02290Bottle gourd (USVL1VR-Ls)cpelsiB696
Cp4.1LG08g02290Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g02290Watermelon (Charleston Gray)cpewcgB790
Cp4.1LG08g02290Watermelon (97103) v1cpewmB845
Cp4.1LG08g02290Watermelon (97103) v1cpewmB854
Cp4.1LG08g02290Melon (DHL92) v3.5.1cpemeB791