Carg06308 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06308
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Werner Syndrome-like exonuclease
Location	Cucurbita_argyrosperma_scaffold_016 : 894720 .. 898418 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAATCGACGAACCTTTCTTCCACCTTCAATCAATTTTTTCTCCGTCCGGAAAGTGACGGCTCCATTAAACTGAAAATGGAATTCCCCTGCAGTAGCAACCGTGCCGGAGCGTCGACGGAGCTCTCCGTCTGTTCTTCACCTTCTTCGTCGTATTCGTTCTCCTTGTCGGAGTTCGATCAGCCATTTACTGAACAGCAACTCCAGGCGATCGAGGCCATTGAAGCTGCATATCAGGCCACCACCGCCAAAAGGCGACGAGAAAATGAGGTATCGTGTGTTTCTCCCGACTCCGGCCGTCGATTGCCTCGCTCCATTTCGTCTCTCCAGTCTCCACATTCTTCTCCATTATCGCCCTGTCGAGGTATTTTCGAACTATCTTTTGAGGATTTAGGGCTTTTTTTTGAGATGGATTGAGATTATGAGTGCGTTTTTTTTACTGTTTTCGTTTGCAGTTACCTCGAAGATGAGATTTCCTGCCTTGAAATTTGATGGCCGAATTGTTTATAGTAGAACTGCTAGTGAGGTAGATAGAGCGTCCAGGGAGCTAGCAAAGAAAATAAACTCCATGAGGAAAGGAATGGATCAAATTACTATCGGATTCGATATCGAGTGGAAACCCACGTTTAGAAGAGGTCAGTCACTCATTTGAATTCATTGAAGCCAACTTAAGAATGATTATCAATTGAATTCATTGAAGCCAACTTAAGAATGATCATACTCACACACCACAAACATGAAATAAACAAAAAGACACAAAGATTTATGTGGTTTTCACTGGTAGAATTAATGCATGAAAATGTTCATTTCGCCGTTGATTAAACTCTATTATGCTCAATCAAATTTGATTAAACATGTTGCTAGCAGTTAAGTTAGTAGGTGAACTCTCTCAAGCACACATTGAATCTGTTGAAGTTTCAGAATCTTAGGAGGGTTAGTTAATTGCTATATCAGTTCATGTTCTGTAATGATTAGCTCACACTACCCATTGTTAGCAGATGGTTAAATGAATTAAGAAATCAGTCTTTCAGAGAGAGAGAGAGAAGGATCGAGTTCTTGAAAGGGCAGAAAATGTTTCTTTGGCGTTTTGCTTGTGTGAGATCCCACGTTGGTTGGGGAGTAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTTCCTAGCAGACGCGTTATAAAAATCTTGAGAGGAACCCCAAAAGGGAAAACTCAAAGAGGACAATATCTGCTAATGGTGGCCTTGGGCCGTTACAAATGGTATCAGAGCTAGACACTAGGTGATGTGCCAGCGAGGAGGCTGAGCCCCGAAGGGAATGGACATGAGGCGGTGTGCCAACAAGGACGCTGGGCTCCGAATGGGGTGGATTGTGAAATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGATGTGGAAACCTCTTCCTAAGAGACGCGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGAAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGAGCTTAGACCGTTACAAATGGTATCAGAGTCAGACACCGGGCGATGTGCCAGCGTTACTTTGTTCACGGATTCCCTGAAATATGTTGATCAAAACACTAATTTTTACTGTTTTTGACTCATTTGAGATGAATTCATCTTGCAGGTGTTCCACCCGGAAAGGCAGCAGTCATGCAACTCTGCTTGGACCATTCACAATGCCATGTGATGCATATCATTCATTCAGGAATACCCCGAAGTTTGCAGGCTCTTCTTGAAGATGACACACTCAGTAAGGTTTGAAGCATCACTATGACTGGTTTTGGAATTGAATTTTCCTGATCTATTTATAAAATAACCTATTTCAATCAATCATGCTGAAAATCTTCAGGCTGGAGTTGGCATTGTTAATGATGCTATGAAAGTTTTTAAAGATTATAACGTGTCTATCAAAGCAGTCGACGAGATCTCGAATCTAGCTAATCAAAAGCTTGCTGGAGTTCCCAAAAAATGGAGCCTTGGATCTTTAACTGAGGCGCTCATATCAAAAGAGGTTGATATATTCTCTCTTTATCATCCATTACCTGTTCATAGAGATCATGAGCTCAAGCAATTTGTAGATCAAAATCTGACTGTGAGATCCCATGTTAGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAATCTCTCCCTAATAGACGTGTTTTAAAACCATGAGGCTGACGGCGATATGTAATGGGAAAAGGTGGACAATATCTACTCGCGATTAACTTAGTCTGTTACAAATGGTATCAGAGCCAGACACCGAGTGGTGTACCAGTGAGGACGCTGCTGGGCCCCCAAAGGGGGGTGAATTGTGTTATTCTACATCAATTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTTCCTAATGACTTGTTTTAAAACTGTGAGGCTGACGGCGATACGCAACGGGCCAAAACGAACAATATCTGCTAGTAGTGGGCTTGGACTTTTACACTCGTCTTTATTCAAATTTATTGAACTTTGTAGCTTCCAAAACCCAGCAAGATCAGACTTGGAAACTGGGAGGTCGCTGTGTTATCGAAGGAGCAACTGCATTATGCTGCCACAGACGCCTTTGCTTCTTGGTACTTACATGAGGTATATTATCAAGTCTTACCTTTCCTTTTCATGCAGTAATTGATTTTAAGATCTCTTCAAAACGATCTCAGGCATGTTTGAAAATAGTTTTAGAAATAGTAATTTTGGTGAAATTGATTTGTTTATGAGTGATTTACCGTTGCCGAGCTTATTCTGAGTGTCACGATCCAAAGAGTGGTTGTGCTCCCAAGTAAGTCATCGAGGACGACGACTAGTTTAAGTAGTGCACCATCTCCCTTGGTCGCATCGTGGCACTCAGATGGGCGCCACTTGAGGGTTGCCGCTTCTCTCGTCACAACGTGAGGGTCACAACCTACTCTCTTCATAGTTGTGACCTTCTTCCCTACTTAAAGTAGTCATCATGCTCGATTACTTACTTGGAGGCACAACCATTGCTAGGTTGTGACACTGAGCGAAGTAGTGCACACAAACAACGGCATTAGAGTGGCTGGACGTTGATTCAGCCCACCGCGTAGGGTTTCACACGATATCCTTGCTTTTGAATCATTAAAGACGTGTTTAAGTGTCTCAGATGGGCGCCACTTGAGGGTTGCCGCTTCTCTCGTCGCAACGTGAGGGTCACAACCTACTCTCTTCATAGTTGTGACCTTCTCCCTACTTAAAGTAGTCATCATGCTCGATTACTTACTTGGAGGCACAACCATTGTTAGGTTGTGACACTGAGCGAAGTAGTGCACACAAACAACGGCATTAGAGTGGCTGGACGTTGATTCAGCCCACCGCGTGGGGTTTCACACGATATCCTTGCTCTCGAATCATTAAAGACGCGTTTAAGGGTGTTTTTTAACAAATCTCGACCTCGAACTATACTCGCAGATCTTAAAGGGATTTCCAGATCCTCAAAAAGCAGCAGATTCAGAGGGAGATGAGGAACCAATATGTGTGATGCCACAATGACATCCAATGGTTGCATTAAGATCGAAGCTCAACACTCAGCTAAGTTATCCAATTTTATCTAATTAATTTTATTGTTGAAATTGTTTCTTATCCACGAAAACCATTCGAAAAAAACTAAATTTAAAGATA

mRNA sequence

ATTTTAATCGACGAACCTTTCTTCCACCTTCAATCAATTTTTTCTCCGTCCGGAAAGTGACGGCTCCATTAAACTGAAAATGGAATTCCCCTGCAGTAGCAACCGTGCCGGAGCGTCGACGGAGCTCTCCGTCTGTTCTTCACCTTCTTCGTCGTATTCGTTCTCCTTGTCGGAGTTCGATCAGCCATTTACTGAACAGCAACTCCAGGCGATCGAGGCCATTGAAGCTGCATATCAGGCCACCACCGCCAAAAGGCGACGAGAAAATGAGGTATCGTGTGTTTCTCCCGACTCCGGCCGTCGATTGCCTCGCTCCATTTCGTCTCTCCAGTCTCCACATTCTTCTCCATTATCGCCCTGTCGAGTTACCTCGAAGATGAGATTTCCTGCCTTGAAATTTGATGGCCGAATTGTTTATAGTAGAACTGCTAGTGAGGTAGATAGAGCGTCCAGGGAGCTAGCAAAGAAAATAAACTCCATGAGGAAAGGAATGGATCAAATTACTATCGGATTCGATATCGAGTGGAAACCCACGTTTAGAAGAGGTGTTCCACCCGGAAAGGCAGCAGTCATGCAACTCTGCTTGGACCATTCACAATGCCATGTGATGCATATCATTCATTCAGGAATACCCCGAAGTTTGCAGGCTCTTCTTGAAGATGACACACTCAGTAAGGCTGGAGTTGGCATTGTTAATGATGCTATGAAAGTTTTTAAAGATTATAACGTGTCTATCAAAGCAGTCGACGAGATCTCGAATCTAGCTAATCAAAAGCTTGCTGGAGTTCCCAAAAAATGGAGCCTTGGATCTTTAACTGAGGCGCTCATATCAAAAGAGCTTCCAAAACCCAGCAAGATCAGACTTGGAAACTGGGAGGTCGCTGTGTTATCGAAGGAGCAACTGCATTATGCTGCCACAGACGCCTTTGCTTCTTGGTACTTACATGAGATCTTAAAGGGATTTCCAGATCCTCAAAAAGCAGCAGATTCAGAGGGAGATGAGGAACCAATATGTGTGATGCCACAATGACATCCAATGGTTGCATTAAGATCGAAGCTCAACACTCAGCTAAGTTATCCAATTTTATCTAATTAATTTTATTGTTGAAATTGTTTCTTATCCACGAAAACCATTCGAAAAAAACTAAATTTAAAGATA

Coding sequence (CDS)

ATGGAATTCCCCTGCAGTAGCAACCGTGCCGGAGCGTCGACGGAGCTCTCCGTCTGTTCTTCACCTTCTTCGTCGTATTCGTTCTCCTTGTCGGAGTTCGATCAGCCATTTACTGAACAGCAACTCCAGGCGATCGAGGCCATTGAAGCTGCATATCAGGCCACCACCGCCAAAAGGCGACGAGAAAATGAGGTATCGTGTGTTTCTCCCGACTCCGGCCGTCGATTGCCTCGCTCCATTTCGTCTCTCCAGTCTCCACATTCTTCTCCATTATCGCCCTGTCGAGTTACCTCGAAGATGAGATTTCCTGCCTTGAAATTTGATGGCCGAATTGTTTATAGTAGAACTGCTAGTGAGGTAGATAGAGCGTCCAGGGAGCTAGCAAAGAAAATAAACTCCATGAGGAAAGGAATGGATCAAATTACTATCGGATTCGATATCGAGTGGAAACCCACGTTTAGAAGAGGTGTTCCACCCGGAAAGGCAGCAGTCATGCAACTCTGCTTGGACCATTCACAATGCCATGTGATGCATATCATTCATTCAGGAATACCCCGAAGTTTGCAGGCTCTTCTTGAAGATGACACACTCAGTAAGGCTGGAGTTGGCATTGTTAATGATGCTATGAAAGTTTTTAAAGATTATAACGTGTCTATCAAAGCAGTCGACGAGATCTCGAATCTAGCTAATCAAAAGCTTGCTGGAGTTCCCAAAAAATGGAGCCTTGGATCTTTAACTGAGGCGCTCATATCAAAAGAGCTTCCAAAACCCAGCAAGATCAGACTTGGAAACTGGGAGGTCGCTGTGTTATCGAAGGAGCAACTGCATTATGCTGCCACAGACGCCTTTGCTTCTTGGTACTTACATGAGATCTTAAAGGGATTTCCAGATCCTCAAAAAGCAGCAGATTCAGAGGGAGATGAGGAACCAATATGTGTGATGCCACAATGA

Protein sequence

MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRRRENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHIIHSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQKAADSEGDEEPICVMPQ

Homology

[Close]

BLAST of Carg06308 vs. NCBI nr
Match: XP_022947132.1 (Werner Syndrome-like exonuclease [Cucurbita moschata])

HSP 1 Score: 613.6 bits (1581), Expect = 3.7e-172
Identity = 311/316 (98.42%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR
Sbjct: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60

Query: 61  RENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEV 120
           RENEV CVSP+SGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKF GRIVYSRTASEV
Sbjct: 61  RENEVLCVSPNSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFGGRIVYSRTASEV 120

Query: 121 DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII 180
           DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII
Sbjct: 121 DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII 180

Query: 181 HSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKW 240
           HSGIPRSLQALLEDDTL+KAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKW
Sbjct: 181 HSGIPRSLQALLEDDTLNKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKW 240

Query: 241 SLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQK 300
           SLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQ 
Sbjct: 241 SLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQA 300

Query: 301 AADSEGDEEPICVMPQ 317
           AADSEGDEEPICVMPQ
Sbjct: 301 AADSEGDEEPICVMPQ 316

[Close]

BLAST of Carg06308 vs. NCBI nr
Match: XP_023540073.1 (Werner Syndrome-like exonuclease [Cucurbita pepo subsp. pepo])

HSP 1 Score: 607.8 bits (1566), Expect = 2.0e-170
Identity = 308/316 (97.47%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEF CSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQ+TTAKRR
Sbjct: 1   MEFSCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQSTTAKRR 60

Query: 61  RENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEV 120
           RENEV CVSP+SGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKF GRIVYSRTASEV
Sbjct: 61  RENEVLCVSPNSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFGGRIVYSRTASEV 120

Query: 121 DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII 180
           DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII
Sbjct: 121 DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII 180

Query: 181 HSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKW 240
           HSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKD+NVSIKAVDEISNLAN+KLAGVPKKW
Sbjct: 181 HSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDHNVSIKAVDEISNLANRKLAGVPKKW 240

Query: 241 SLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQK 300
           SLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQ+
Sbjct: 241 SLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQE 300

Query: 301 AADSEGDEEPICVMPQ 317
           AADSEGDEEPICVMPQ
Sbjct: 301 AADSEGDEEPICVMPQ 316

[Close]

BLAST of Carg06308 vs. NCBI nr
Match: XP_022974736.1 (Werner Syndrome-like exonuclease [Cucurbita maxima])

HSP 1 Score: 602.8 bits (1553), Expect = 6.6e-169
Identity = 307/317 (96.85%), Postives = 312/317 (98.42%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEFPCSSNRAGASTELSVCSSPSSSYSFS+SEFDQPFTEQQLQAIEAIEA YQATTAKRR
Sbjct: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSVSEFDQPFTEQQLQAIEAIEAEYQATTAKRR 60

Query: 61  RENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEV 120
           RENEV CVSP+SGRRLPRSISSLQSPHSSPLSPCRVTS MRFPALKF GRIVYSRTASEV
Sbjct: 61  RENEVLCVSPNSGRRLPRSISSLQSPHSSPLSPCRVTSMMRFPALKFGGRIVYSRTASEV 120

Query: 121 DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII 180
           DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII
Sbjct: 121 DRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHII 180

Query: 181 HSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKL-AGVPKK 240
           HSGIPRSLQALLED+TLSKAGVGIVNDAMKVFKDYNVSI+AVDEISNLANQKL AGVPKK
Sbjct: 181 HSGIPRSLQALLEDNTLSKAGVGIVNDAMKVFKDYNVSIRAVDEISNLANQKLAAGVPKK 240

Query: 241 WSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQ 300
           WSLGSLTEALISKELPKPSKIRLGNWEVA+LSKEQLHYAATDAFASWYLHEILKGFPDPQ
Sbjct: 241 WSLGSLTEALISKELPKPSKIRLGNWEVAMLSKEQLHYAATDAFASWYLHEILKGFPDPQ 300

Query: 301 KAADSEGDEEPICVMPQ 317
           KAADSEGDEEPICVMPQ
Sbjct: 301 KAADSEGDEEPICVMPQ 317

[Close]

BLAST of Carg06308 vs. NCBI nr
Match: XP_008438323.1 (PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo])

HSP 1 Score: 488.4 bits (1256), Expect = 1.8e-134
Identity = 250/311 (80.39%), Postives = 275/311 (88.42%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEFP SSN   +STELS CSS   S+SFS SEFDQPFTEQQLQAIEAIEAAYQ+T+AK+R
Sbjct: 1   MEFPGSSNSGHSSTELSACSSSFPSWSFSSSEFDQPFTEQQLQAIEAIEAAYQSTSAKKR 60

Query: 61  R------ENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYS 120
           R      EN VSCVSP++GRRLPRSI S QSPH SPLS CRV SKMRFPAL + GRI+YS
Sbjct: 61  RPNSTLDENGVSCVSPNTGRRLPRSIFSQQSPHFSPLSSCRVNSKMRFPALSYGGRIIYS 120

Query: 121 RTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQC 180
           RT SEVDRASRELAKKINS RKGM+QITIGFDIEW+P+F+RGVPPGKAAVMQLCL++S+C
Sbjct: 121 RTVSEVDRASRELAKKINSTRKGMEQITIGFDIEWRPSFKRGVPPGKAAVMQLCLENSEC 180

Query: 181 HVMHIIHSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLA 240
           HVMHIIHSGIP+SLQALLEDDTL+KAGVGI +DA KVFKDYNVS+K +DEIS+LANQKLA
Sbjct: 181 HVMHIIHSGIPQSLQALLEDDTLNKAGVGIASDASKVFKDYNVSMKQLDEISDLANQKLA 240

Query: 241 GVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG 300
           GVPKKW L +LTE LISKEL KP +IRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG
Sbjct: 241 GVPKKWGLRALTETLISKELRKPDRIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG 300

Query: 301 FPDPQKAADSE 306
           FP  +K ADSE
Sbjct: 301 FPHVEKVADSE 311

[Close]

BLAST of Carg06308 vs. NCBI nr
Match: XP_022147109.1 (Werner Syndrome-like exonuclease [Momordica charantia])

HSP 1 Score: 487.3 bits (1253), Expect = 4.0e-134
Identity = 255/317 (80.44%), Postives = 273/317 (86.12%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEFP  S  AGAS  LSV SS  SS SFS+SEFDQPFTEQQLQ I+AIEA YQ+T+ KRR
Sbjct: 1   MEFPGCSRNAGASPPLSVSSSSFSSRSFSVSEFDQPFTEQQLQEIDAIEAMYQSTSGKRR 60

Query: 61  R------ENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYS 120
           R      ENE SCVSP++GRRLP SI SLQ P+SSPLSP RV SKMRFPAL FDGRI+YS
Sbjct: 61  RGSSTADENEASCVSPNAGRRLPHSILSLQLPYSSPLSPRRVNSKMRFPALNFDGRIIYS 120

Query: 121 RTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQC 180
            TASEVDRASRELAKKI+S RKG DQITIGFDIEWKPTFRRGVPPGK AVMQLCLD+SQC
Sbjct: 121 TTASEVDRASRELAKKISSTRKGTDQITIGFDIEWKPTFRRGVPPGKTAVMQLCLDNSQC 180

Query: 181 HVMHIIHSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLA 240
           HVMHIIHSGI  SL+ LLEDDTLSKAGVGI NDA+KVFKDYNVSIKAV EIS+LANQKLA
Sbjct: 181 HVMHIIHSGITPSLKTLLEDDTLSKAGVGIANDAVKVFKDYNVSIKAVSEISDLANQKLA 240

Query: 241 GVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG 300
           GVP+KW LGSLT+AL+SKEL KP+KIRLGNWEVAVLSK+QL YAATDAFASWYLHEILKG
Sbjct: 241 GVPQKWGLGSLTKALVSKELQKPNKIRLGNWEVAVLSKQQLQYAATDAFASWYLHEILKG 300

Query: 301 FPDPQKAADSEGDEEPI 312
           FP  QK  DSE D EPI
Sbjct: 301 FPHAQKVEDSERDMEPI 317

[Close]

BLAST of Carg06308 vs. TAIR10
Match: AT4G13870.2 (Werner syndrome-like exonuclease)

HSP 1 Score: 271.9 bits (694), Expect = 4.8e-73
Identity = 142/280 (50.71%), Postives = 193/280 (68.93%), Query Frame = 0


Query: 34  DQPFTEQQLQAIEAIEAAYQ----------------ATTAKRRRENEVSCVSPDSGRRLP 93
           D  FTE++L AI+AIEA+Y                 ATT+    E + + +  +  R+LP
Sbjct: 8   DDAFTEEELLAIDAIEASYNFSRXXXXXXXXXXXXXATTSVHGHEEDPNQIPNNIRRQLP 67

Query: 94  RSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEVDRASRELAKKINSMRKG 153
           RSI+S  S    PLS CR  +   FPA++F GRI+YS+TA+EVD+ + +L K +++ R  
Sbjct: 68  RSITSSTSYKRFPLSRCRARN---FPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKRDE 127

Query: 154 MDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHIIHSGIPRSLQALLEDDTL 213
                +G DIEW+P+FR+GV PGK A +Q+C+D + C VMHI HSGIP+SLQ L+ED TL
Sbjct: 128 SGIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTL 187

Query: 214 SKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKWSLGSLTEALISKELPKP 273
            K G+GI  D++K+F DY VSIK V+++S+LANQK+ G  KKW L SLTE L+ KEL KP
Sbjct: 188 VKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-DKKWGLASLTETLVCKELLKP 247

Query: 274 SKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPD 298
           ++IRLGNWE   LSK+QL YAATDA+ASW+L+++LK  PD
Sbjct: 248 NRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDLPD 283

[Close]

BLAST of Carg06308 vs. TAIR10
Match: AT4G13885.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-17
Identity = 47/110 (42.73%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 188 LQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKWSLGSLTE 247
           LQ L+ED TL K G+GI  D++K+F DY                                
Sbjct: 186 LQHLIEDSTLVKVGIGIDGDSVKLFHDYG------------------------------- 245

Query: 248 ALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPD 298
                 L KP++IRLGNWEV  LSK+QL YAATDA+ASW+LH++LK  PD
Sbjct: 246 ------LLKPNRIRLGNWEVHPLSKQQLQYAATDAYASWHLHQVLKDLPD 258

[Close]

BLAST of Carg06308 vs. Swiss-Prot
Match: sp|Q84LH3|WEX_ARATH (Werner Syndrome-like exonuclease OS=Arabidopsis thaliana OX=3702 GN=WEX PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.7e-72
Identity = 142/280 (50.71%), Postives = 193/280 (68.93%), Query Frame = 0


Query: 34  DQPFTEQQLQAIEAIEAAYQ----------------ATTAKRRRENEVSCVSPDSGRRLP 93
           D  FTE++L AI+AIEA+Y                 ATT+    E + + +  +  R+LP
Sbjct: 8   DDAFTEEELLAIDAIEASYNFSRXXXXXXXXXXXXXATTSVHGHEEDPNQIPNNIRRQLP 67

Query: 94  RSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEVDRASRELAKKINSMRKG 153
           RSI+S  S    PLS CR  +   FPA++F GRI+YS+TA+EVD+ + +L K +++ R  
Sbjct: 68  RSITSSTSYKRFPLSRCRARN---FPAMRFGGRILYSKTATEVDKRAMQLIKVLDTKRDE 127

Query: 154 MDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHIIHSGIPRSLQALLEDDTL 213
                +G DIEW+P+FR+GV PGK A +Q+C+D + C VMHI HSGIP+SLQ L+ED TL
Sbjct: 128 SGIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTL 187

Query: 214 SKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKWSLGSLTEALISKELPKP 273
            K G+GI  D++K+F DY VSIK V+++S+LANQK+ G  KKW L SLTE L+ KEL KP
Sbjct: 188 VKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-DKKWGLASLTETLVCKELLKP 247

Query: 274 SKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPD 298
           ++IRLGNWE   LSK+QL YAATDA+ASW+L+++LK  PD
Sbjct: 248 NRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDLPD 283

[Close]

BLAST of Carg06308 vs. Swiss-Prot
Match: sp|O93530|WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis OX=8355 GN=wrn PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.0e-32
Identity = 69/193 (35.75%), Postives = 117/193 (60.62%), Query Frame = 0


Query: 103 PALKFDGRIVYSRTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKA 162
           P +KF+G IVYS  +++    S ++   +      +++  +GFDIEW P + +G   GK 
Sbjct: 39  PFMKFNGSIVYSYESNDCSLLSEDIRSSL------LEEDVLGFDIEWPPVYTKG-KTGKV 98

Query: 163 AVMQLCLDHSQCHVMHII-HSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKA 222
           A++Q+C+   +C++ HI   +G P+ L+ LLED+++ K GVGI  D  K+  DY + +K 
Sbjct: 99  ALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKLKG 158

Query: 223 VDEISNLANQKLAGVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATD 282
             E+S +ANQKL    +KW+   L + L  ++L K    R  NW++ +L+++Q  YAATD
Sbjct: 159 FIELSEMANQKLR-CKEKWTFNGLIKHLFKEQLYKRKSYRCSNWDIFLLTEDQKLYAATD 218

Query: 283 AFASWYLHEILKG 295
           A+A   +++ L+G
Sbjct: 219 AYAGLLIYKKLEG 223

[Close]

BLAST of Carg06308 vs. Swiss-Prot
Match: sp|Q14191|WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens OX=9606 GN=WRN PE=1 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-31
Identity = 75/208 (36.06%), Postives = 122/208 (58.65%), Query Frame = 0


Query: 103 PALKFDGRIVYSRTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKA 162
           P L+F G IVYS  AS+    S +++  ++      D   +GFD+EW P + RG   GK 
Sbjct: 45  PFLEFTGSIVYSYDASDCSFLSEDISMSLS------DGDVVGFDMEWPPLYNRG-KLGKV 104

Query: 163 AVMQLCLDHSQCHVMHIIHSGI-PRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKA 222
           A++QLC+  S+C++ H+    + P+ L+ LLE+  + KAGVGI  D  K+ +D+++ +K 
Sbjct: 105 ALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKN 164

Query: 223 VDEISNLANQKLAGVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATD 282
             E++++AN+KL    + WSL SL + L+ K+L K   IR  NW    L+++Q  YAATD
Sbjct: 165 FVELTDVANKKLK-CTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATD 224

Query: 283 AFASWYLHEILKGFPDPQKAADSEGDEE 310
           A+A + ++  L+   D  +      +EE
Sbjct: 225 AYAGFIIYRNLEILDDTVQRFAINKEEE 244

[Close]

BLAST of Carg06308 vs. Swiss-Prot
Match: sp|O09053|WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus OX=10090 GN=Wrn PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 8.3e-30
Identity = 70/196 (35.71%), Postives = 118/196 (60.20%), Query Frame = 0


Query: 103 PALKFDGRIVYSRTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKA 162
           P L+F G IVYS  AS+    S +++ +++      D   +GFD+EW P ++ G    + 
Sbjct: 39  PFLEFPGSIVYSYEASDCSFLSEDISMRLS------DGDVVGFDMEWPPIYKPG-KRSRV 98

Query: 163 AVMQLCLDHSQCHVMHIIHSGI-PRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKA 222
           AV+QLC+  S+C++ HI    + P+ L+ LLE+ ++ KAGVGI  D  K+ +D++V +++
Sbjct: 99  AVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLES 158

Query: 223 VDEISNLANQKLAGVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATD 282
             E++++AN+KL    + WSL  L + ++ K+L K   IR  NW    L+++Q  YAATD
Sbjct: 159 FVELTDVANEKLK-CAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATD 218

Query: 283 AFASWYLHEILKGFPD 298
           A+A   +++ L    D
Sbjct: 219 AYAGLIIYQKLGNLGD 226

[Close]

BLAST of Carg06308 vs. Swiss-Prot
Match: sp|B4JF25|WRNXO_DROGR (Werner Syndrome-like exonuclease OS=Drosophila grimshawi OX=7222 GN=WRNexo PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-17
Identity = 64/217 (29.49%), Postives = 108/217 (49.77%), Query Frame = 0


Query: 74  RRLPRSISSLQS-PHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEVDRASRELAKKIN 133
           RR  R   S++S     P SP +   K + P +K+ G I Y   + E+  ++ E+ + + 
Sbjct: 69  RRSSRVTRSMRSMAEDGPASPEKEIPK-KLPFIKYSGAIKYFTESQEIAASADEVMQWVE 128

Query: 134 SMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHIIH-SGIPRSLQAL 193
             +  MD + + FD+EW  +F+ G  PGK++V+Q+C+D   C+V  +   + IP +L AL
Sbjct: 129 K-QINMDVVPMAFDMEWPFSFQTG--PGKSSVIQICVDERCCYVYQLSKLNKIPAALAAL 188

Query: 194 LEDDTLSKAGVGIVNDAMKVFKDY-----NVSIKAVDEISNLANQKLAGVPKKWSLGSLT 253
           +    +   GV I  D  K+ +D+        I+   ++    NQ +     +WSL  L 
Sbjct: 189 INHPKVRLHGVNIKADFRKLERDFPEMSAEPLIEKCVDLGVWCNQ-VCETGGRWSLERLA 248

Query: 254 EALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAF 284
             +  K + K  K+R+  W V  L + QL YAA D +
Sbjct: 249 NFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVY 280

[Close]

BLAST of Carg06308 vs. TrEMBL
Match: tr|A0A1S3AWQ6|A0A1S3AWQ6_CUCME (Werner Syndrome-like exonuclease OS=Cucumis melo OX=3656 GN=LOC103483463 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.2e-134
Identity = 250/311 (80.39%), Postives = 275/311 (88.42%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEFP SSN   +STELS CSS   S+SFS SEFDQPFTEQQLQAIEAIEAAYQ+T+AK+R
Sbjct: 1   MEFPGSSNSGHSSTELSACSSSFPSWSFSSSEFDQPFTEQQLQAIEAIEAAYQSTSAKKR 60

Query: 61  R------ENEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYS 120
           R      EN VSCVSP++GRRLPRSI S QSPH SPLS CRV SKMRFPAL + GRI+YS
Sbjct: 61  RPNSTLDENGVSCVSPNTGRRLPRSIFSQQSPHFSPLSSCRVNSKMRFPALSYGGRIIYS 120

Query: 121 RTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQC 180
           RT SEVDRASRELAKKINS RKGM+QITIGFDIEW+P+F+RGVPPGKAAVMQLCL++S+C
Sbjct: 121 RTVSEVDRASRELAKKINSTRKGMEQITIGFDIEWRPSFKRGVPPGKAAVMQLCLENSEC 180

Query: 181 HVMHIIHSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLA 240
           HVMHIIHSGIP+SLQALLEDDTL+KAGVGI +DA KVFKDYNVS+K +DEIS+LANQKLA
Sbjct: 181 HVMHIIHSGIPQSLQALLEDDTLNKAGVGIASDASKVFKDYNVSMKQLDEISDLANQKLA 240

Query: 241 GVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG 300
           GVPKKW L +LTE LISKEL KP +IRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG
Sbjct: 241 GVPKKWGLRALTETLISKELRKPDRIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG 300

Query: 301 FPDPQKAADSE 306
           FP  +K ADSE
Sbjct: 301 FPHVEKVADSE 311

[Close]

BLAST of Carg06308 vs. TrEMBL
Match: tr|A0A0A0L9B9|A0A0A0L9B9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129680 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 5.6e-132
Identity = 246/311 (79.10%), Postives = 272/311 (87.46%), Query Frame = 0


Query: 1   MEFPCSSNRAGASTELSVCSSPSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQATTAKRR 60
           MEF  SSN + +STELS CSS    +SFS SEFDQPFTEQQLQAIEAIEAAYQ+T+AK+R
Sbjct: 1   MEFRGSSNSSHSSTELSACSSSFPPWSFSASEFDQPFTEQQLQAIEAIEAAYQSTSAKKR 60

Query: 61  RE------NEVSCVSPDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYS 120
           R       NEVSCVSPD+GRRLPRSI S QSP  SPLSPCRV SKMRFPAL + GRI+YS
Sbjct: 61  RPNSTPDGNEVSCVSPDTGRRLPRSIFSHQSPRFSPLSPCRVNSKMRFPALNYGGRIIYS 120

Query: 121 RTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQC 180
           RT SEVDRASRELAKKINS RK MDQITIGFDIEW+P+F+RGVPPGKAAVMQLCL++S+C
Sbjct: 121 RTVSEVDRASRELAKKINSTRKAMDQITIGFDIEWRPSFKRGVPPGKAAVMQLCLENSEC 180

Query: 181 HVMHIIHSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLA 240
           HVMHIIHSGIP+SLQALLEDDTLSKAGVGI +DA KVFK+YNVS+K ++EIS+LANQKLA
Sbjct: 181 HVMHIIHSGIPQSLQALLEDDTLSKAGVGIASDASKVFKEYNVSVKPLNEISDLANQKLA 240

Query: 241 GVPKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKG 300
           GVPKKW L +LTE LISKEL KP +IRLGNWEVAVLSK+QL YAATDAFASWYLHEILKG
Sbjct: 241 GVPKKWGLRALTETLISKELQKPDRIRLGNWEVAVLSKDQLQYAATDAFASWYLHEILKG 300

Query: 301 FPDPQKAADSE 306
           FP  +K ADSE
Sbjct: 301 FPHVEKVADSE 311

[Close]

BLAST of Carg06308 vs. TrEMBL
Match: tr|A0A2P6QW57|A0A2P6QW57_ROSCH (Putative DNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413601 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.3e-82
Identity = 168/291 (57.73%), Postives = 204/291 (70.10%), Query Frame = 0


Query: 25  SYSFSLSEFDQPFTEQQLQAIE-AIEAA---YQATTAKRRRENEVSCVSPDSGRRLPRSI 84
           S + S SE+D+PFTE+ LQAIE A EAA                V+  S  + RRLP S+
Sbjct: 16  STTLSESEWDEPFTEEDLQAIEAAFEAAATXXXXXXXXXXXXXXVTDQSQSARRRLPSSV 75

Query: 85  SSLQSPHSSPLSPCRVTS--KMRFPALKFDGRIVYSRTASEVDRASRELAKKINSMRKGM 144
            +LQ P++  LSPCR  +  +MR+P LKF GR+ YSRTA EV++A+ E+ K + +    M
Sbjct: 76  LALQHPNAFALSPCRQAANIRMRYPVLKFGGRVTYSRTAVEVEKAAMEILKTVKAKTNEM 135

Query: 145 DQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHIIHSGIPRSLQALLEDDTLS 204
            Q  +GFDIEWKPTF+RGVPPGK AV+Q+C D S CHVMHIIHSGIPRSLQ LLE  ++ 
Sbjct: 136 GQNAVGFDIEWKPTFQRGVPPGKVAVLQICGDTSCCHVMHIIHSGIPRSLQLLLESSSIL 195

Query: 205 KAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKWSLGSLTEALISKELPKPS 264
           K G GI NDA+KVFKDYNVSIKAV+++S LAN KL G  + W L SLTE LISK+L KP 
Sbjct: 196 KVGAGIANDAVKVFKDYNVSIKAVEDLSYLANHKL-GDSQNWGLASLTEKLISKQLLKPK 255

Query: 265 KIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQKAADSEGDEE 310
           KIRLGNWE   LSKEQL YAATDAFASWYLHE+L+  PD +K      D +
Sbjct: 256 KIRLGNWETKYLSKEQLQYAATDAFASWYLHEVLRSLPDAEKLEKVTADNQ 305

[Close]

BLAST of Carg06308 vs. TrEMBL
Match: tr|A0A251LAJ3|A0A251LAJ3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G144300 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.9e-82
Identity = 165/301 (54.82%), Postives = 210/301 (69.77%), Query Frame = 0


Query: 27  SFSLSEFDQPFTEQQLQAIEAIEAAYQATT-----------AKRRRENEVSCVSPDSGRR 86
           S S+ ++DQP TE++LQAI+A+EAA+Q +T            KR            + R+
Sbjct: 22  SVSVPDWDQPLTEEELQAIDAVEAAFQRSTPTNTIPSSSVIRKRHSPPPNDLDMRKNRRQ 81

Query: 87  LPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRTASEVDRASRELAKKINSMR 146
           LP S+  L  P S  LSPC   +K+R+PALKF G I+YSRT  EV++A+REL + + + +
Sbjct: 82  LPNSVVGLSRPFS--LSPCEANTKVRYPALKFGGHIIYSRTPMEVEKAARELLQSLEAKQ 141

Query: 147 KGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHVMHIIHSGIPRSLQALLEDD 206
             M Q+ +GFDIEW+P+FRRGV PGKAAVMQLC     CHVMHIIHSGI  +LQ LLED 
Sbjct: 142 GEMGQVIVGFDIEWRPSFRRGVLPGKAAVMQLCCGTDYCHVMHIIHSGITETLQFLLEDS 201

Query: 207 TLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGVPKKWSLGSLTEALISKELP 266
            L K GVGI ND++KVFKDYNVS+KAV+++S +AN+KL G PK W L SLTE LI KEL 
Sbjct: 202 MLLKVGVGIRNDSVKVFKDYNVSVKAVEDLSYMANKKLGGKPKSWGLRSLTELLICKELQ 261

Query: 267 KPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFPDPQKAADSEGDEEPICVMP 317
           K ++IRLGNWEV VLSK+QL YAATDAFASW L+++LK  PD + A     DE  + V+P
Sbjct: 262 KLNRIRLGNWEVDVLSKKQLEYAATDAFASWQLYQVLKTLPDAKDATAERSDE--LNVVP 318

[Close]

BLAST of Carg06308 vs. TrEMBL
Match: tr|A0A067L4A5|A0A067L4A5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01087 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 170/312 (54.49%), Postives = 220/312 (70.51%), Query Frame = 0


Query: 13  STELSVCSS-----PSSSYSFSLSEFDQPFTEQQLQAIEAIEAAYQ---------ATTAK 72
           +TE  + SS     PSSS   S+SE+DQP T+++LQAI+AIEA++Q         +++A 
Sbjct: 8   NTECKIVSSSPSLPPSSSPFPSISEWDQPLTDEELQAIDAIEASFQRPALTTTTPSSSAI 67

Query: 73  RRRENEVSCVS--PDSGRRLPRSISSLQSPHSSPLSPCRVTSKMRFPALKFDGRIVYSRT 132
           R+R++ +        + R+LP S+  L  P S  LSPC+   KMR+P++KF GRI+YSRT
Sbjct: 68  RKRQSTLQNDHNLQKTRRQLPNSVLGLSRPFS--LSPCQANIKMRYPSMKFGGRILYSRT 127

Query: 133 ASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDHSQCHV 192
             +V+ A+ EL   + + R   DQ+ IG DIEW+PTFRRGV PGKAAV+QLC     C+V
Sbjct: 128 PMDVEEAANELLFSLEAKRGETDQVAIGLDIEWRPTFRRGVLPGKAAVLQLCSGTDDCYV 187

Query: 193 MHIIHSGIPRSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISNLANQKLAGV 252
           MHIIHSGI ++LQ LLED TL K GVGI  D+ K+FKDYN+S KAV+++S +AN+KL G 
Sbjct: 188 MHIIHSGITKTLQFLLEDATLLKVGVGIRGDSAKIFKDYNISTKAVEDLSYVANKKLGGE 247

Query: 253 PKKWSLGSLTEALISKELPKPSKIRLGNWEVAVLSKEQLHYAATDAFASWYLHEILKGFP 309
           PK WSL SLTE L+ KEL KP+KIRLGNWEV VLSKEQL YAATDAFASW L ++LK  P
Sbjct: 248 PKNWSLQSLTEKLVCKELQKPNKIRLGNWEVDVLSKEQLQYAATDAFASWQLCQVLKSLP 307

The following BLAST results are available for this feature:

BLAST of Carg06308 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947132.1	3.7e-172	98.42	Werner Syndrome-like exonuclease [Cucurbita moschata]	[more]
XP_023540073.1	2.0e-170	97.47	Werner Syndrome-like exonuclease [Cucurbita pepo subsp. pepo]	[more]
XP_022974736.1	6.6e-169	96.85	Werner Syndrome-like exonuclease [Cucurbita maxima]	[more]
XP_008438323.1	1.8e-134	80.39	PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo]	[more]
XP_022147109.1	4.0e-134	80.44	Werner Syndrome-like exonuclease [Momordica charantia]	[more]

BLAST of Carg06308 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13870.2	4.8e-73	50.71	Werner syndrome-like exonuclease	[more]
AT4G13885.1	3.8e-17	42.73	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Carg06308 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84LH3\|WEX_ARATH	8.7e-72	50.71	Werner Syndrome-like exonuclease OS=Arabidopsis thaliana OX=3702 GN=WEX PE=1 SV=...	[more]
sp\|O93530\|WRN_XENLA	4.0e-32	35.75	Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis OX=8355 GN=wrn ...	[more]
sp\|Q14191\|WRN_HUMAN	2.6e-31	36.06	Werner syndrome ATP-dependent helicase OS=Homo sapiens OX=9606 GN=WRN PE=1 SV=2	[more]
sp\|O09053\|WRN_MOUSE	8.3e-30	35.71	Werner syndrome ATP-dependent helicase homolog OS=Mus musculus OX=10090 GN=Wrn P...	[more]
sp\|B4JF25\|WRNXO_DROGR	2.1e-17	29.49	Werner Syndrome-like exonuclease OS=Drosophila grimshawi OX=7222 GN=WRNexo PE=3 ...	[more]

BLAST of Carg06308 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWQ6\|A0A1S3AWQ6_CUCME	1.2e-134	80.39	Werner Syndrome-like exonuclease OS=Cucumis melo OX=3656 GN=LOC103483463 PE=4 SV...	[more]
tr\|A0A0A0L9B9\|A0A0A0L9B9_CUCSA	5.6e-132	79.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129680 PE=4 SV=1	[more]
tr\|A0A2P6QW57\|A0A2P6QW57_ROSCH	5.3e-82	57.73	Putative DNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413601 PE=4 S...	[more]
tr\|A0A251LAJ3\|A0A251LAJ3_MANES	6.9e-82	54.82	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G144300 PE=4 SV=...	[more]
tr\|A0A067L4A5\|A0A067L4A5_JATCU	1.5e-81	54.49	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01087 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008408	3'-5' exonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf
IPR002562	3'-5'_exonuclease_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06308-RA	Carg06308-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 111..297 e-value: 3.8E-14 score: 63.0
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 126..293 e-value: 8.7E-15 score: 54.8
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 96..303 e-value: 1.2E-50 score: 173.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..92
None	No IPR available	PANTHER	PTHR13620:SF19	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 26..300
None	No IPR available	PANTHER	PTHR13620	3-5 EXONUCLEASE	coord: 26..300
None	No IPR available	CDD	cd06141	WRN_exo	coord: 115..293 e-value: 8.00035E-55 score: 177.385
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 108..295

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06308	Cla021399	Watermelon (97103) v1	carwmB0961
Carg06308	Csa3G129680	Cucumber (Chinese Long) v2	carcuB0975
Carg06308	MELO3C006293	Melon (DHL92) v3.5.1	carmeB0941
Carg06308	ClCG05G003120	Watermelon (Charleston Gray)	carwcgB0935
Carg06308	CSPI03G10600	Wild cucumber (PI 183967)	carcpiB0998
Carg06308	Cucsa.256660	Cucumber (Gy14) v1	carcgyB1077
Carg06308	CmaCh06G011990	Cucurbita maxima (Rimu)	carcmaB1325
Carg06308	CmoCh06G012360	Cucurbita moschata (Rifu)	carcmoB1288
Carg06308	Lsi05G018620	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06308	Cp4.1LG08g02610	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06308	CsGy3G010680	Cucumber (Gy14) v2	carcgybB0948
Carg06308	MELO3C006293.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06308	CsaV3_3G010740	Cucumber (Chinese Long) v3	carcucB1003
Carg06308	Cla97C05G083750	Watermelon (97103) v2	carwmbB1008
Carg06308	Bhi01G000143	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06308	Silver-seed gourd	carcarB266
Carg06308	Silver-seed gourd	carcarB649
Carg06308	Cucumber (Gy14) v2	carcgybB0946
Carg06308	Cucumber (Gy14) v1	carcgyB1078
Carg06308	Cucurbita maxima (Rimu)	carcmaB1320
Carg06308	Cucurbita maxima (Rimu)	carcmaB1321
Carg06308	Cucurbita maxima (Rimu)	carcmaB1327
Carg06308	Cucurbita moschata (Rifu)	carcmoB1284
Carg06308	Cucurbita moschata (Rifu)	carcmoB1285
Carg06308	Cucurbita moschata (Rifu)	carcmoB1289
Carg06308	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06308	Cucurbita pepo (Zucchini)	carcpeB1330
Carg06308	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06308	Wild cucumber (PI 183967)	carcpiB0996
Carg06308	Bottle gourd (USVL1VR-Ls)	carlsiB876
Carg06308	Melon (DHL92) v3.5.1	carmeB0939
Carg06308	Melon (DHL92) v3.6.1	carmedB0945
Carg06308	Watermelon (Charleston Gray)	carwcgB0936
Carg06308	Watermelon (97103) v1	carwmB0962
Carg06308	Watermelon (97103) v2	carwmbB1009
Carg06308	Wax gourd	carwgoB1114