Carg06248 (gene) Silver-seed gourd

Overview
NameCarg06248
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAtp-dependent rna helicase dbp-7
LocationCucurbita_argyrosperma_scaffold_016 : 473183 .. 475460 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTGATTCTGTTCTTAACTCGGGAGGAGCAAAAGGTAAAGGCCAATGGGGTCCGCCACTGCGAAGGTTTCAGACAAATGCGCCCTTTGGCGTTCGTTGACCCAACGATCACTTCTGATTTGATTCATTTCAATTTCTGAAAACCCCAAAAGCCGTTTCTCCCAAAACTTGGCTTGGCGCACTACTCATTCTTTCCTCTCTTTGAAGACACGCATTGAACTCGTGATTTCTGGGTATCTTCTTCTTCTTCTGCTACTGATTCCTTTTCGATGGTTCAAAATCCAACGCCCATATGCCGCATCTCTGTTCCTGAGATGATGAAGGACCAACCTGCTAGTGGGTTTGATCTAATCTGGGTTTGTTTTTGATCTTTGTGTTCTTGCTCTTTGTGTTGATTTTTGTTGTTTTTGTTGGGCTTGCAAGTCTATCCGAAGGTGAAGGTGAGGGACGAGAACGAACTCGATGATCACCCTGCTGTAAATGAGCAGAAGAGAAGTTATCTGTTGTCTTTGAAAGATTTGGAATCACTATTTCTTGAAGACTCCTCGAGTTCTTCAGGTACTCTCTAGTTTCTGGGAATTGTTATAAATTCATGGGTCTGTTTCTGCTTGAACGAAGCATCTTTGTGCTGTTGTCTTTGTTTCTAATCTTTTCGTGTTGTGGAAGCTGAAAAATGAAAAACCAGAAGTTGACAGTCAGTTTAGATAGTTATATCACAAATTTGAAGTTTAAATGTTGATATTAGCTTATTAGCTTTCTTTTTCAGAACTACATAGAGAAAGGGCATCTTGTTCTGTTCTAGGGACACCAAACTTCAGAGCTAGAGTGTGGAGTAAGTTTCCACCAAATCTGACAGAAAATGAAGTTTTTGAGTAACCTATGATTGTCATCGTCAAAAAAACAACTCATCCCAATTTTGATTTTGCTTGGAATTTGAAGATATTTCAAACGTACCTTTGATCTTTCCTAAACGTTTCAAAAGTATCCTTAAAAAGTAGAAATCATATAGCTTGTTAAACACAAAACCGACATGGCAGCAACTATAATGCTTGCTTGAATTAGGTATGAGAGAATAACATTCAAATACATTAGTTTTTTAGAATAACACCAATCATAATAAATGTTGAAAATTTCACTCTCTGAATTTTGACCTCACGGTTTTATTGCAAAAATGTTGGTATTCACAGGAAAGGAGCATCGTGTTTCTCCATCATCCACTGCTAAAGTACCGAAAGTTTACAGTCCCAATGTAGTAAAGCCATCCACTTCTGAATCTCAAGGTACGATTCTAACATTATATTTTCATCCCTACAAACAAAAAACAGTAGATTTTCATTCTGTTCTGAAATATCAGCTATGTTTGGTTTGCTAAAGCAGATAAGAGGTGTAACAAAGTTAATACTAGAGCCAGCTCAATCCCAATGCCTCGTGCCGTCCTATCCAGCCCTGGTATTTCCTACCTTCTATGAACTAGTCTCACTATGATTCATCTCTATGTTTATGGGTTCTTGAGCATCTTTAAGTTAATCAAAATGTCTCTCGTGAATATCATTTTATTAATTGAAGCTTTCTATTCTGTTTTTCTCCAGAAAATGATCTGATGATTGGTAAGAAAAACAGAAAAACAACAGAAAAACCATCAGTCTTGAAGAATCACAATTCAGTTCAGTCCAGACACTCACAGTGTAAGACCGTCGCTAGGCACAGTGGCAACGAAAATCCCATTTGCTCGAGGAAATCCAAGGAAACTGTCGTCGATAGTAAATGTCGATTGGCTGGGAAGAACGGTGTGGCCTACACAGACCGCAATTTCACGTCTAAGAAGACCCCGTAGAAACCAGAGTCCTTGTGGTGATGCTATCATCAAGCATGTAATTAGCTTCTTCCAATAGGGGAGAAATATAAGACTCGAGTCAAGGCTTGCACTGTCTAAATGCTCAACAAGGCAAGAGGTTCCTCGTTCGTAGCATAGCTTACAGATGTTTTGAACTCGAAAACTTGAAATGAATGAAGTTCTAGTAACAACTCGCGAAATTTTCCACTGATATAGCTATGAAACTGATCTAGACCTGCATTTTTATTCATCACTATGTTGTTTGCAACTCCATCTCCAGATTCAACAGCTTTAAAATACAACAGATTCTATCAAAATGCGGGTTCGAACGATCTCCCGAAAGAAAGACGTGTCCGCTATTGTTTATCTCAACCCAACTACAACCTGGTTGTTTCTTAACTCCATTGTTCTTCATTCTTGCCAATATCCTTTCAGCATCTTCT

mRNA sequence

AATTTGATTCTGTTCTTAACTCGGGAGGAGCAAAAGGTAAAGGCCAATGGGGTCCGCCACTGCGAAGGTTTCAGACAAATGCGCCCTTTGGCGTTCGTTGACCCAACGATCACTTCTGATTTGATTCATTTCAATTTCTGAAAACCCCAAAAGCCGTTTCTCCCAAAACTTGGCTTGGCGCACTACTCATTCTTTCCTCTCTTTGAAGACACGCATTGAACTCGTGATTTCTGGGTATCTTCTTCTTCTTCTGCTACTGATTCCTTTTCGATGGTTCAAAATCCAACGCCCATATGCCGCATCTCTGTTCCTGAGATGATGAAGGACCAACCTGCTATCTATCCGAAGGTGAAGGTGAGGGACGAGAACGAACTCGATGATCACCCTGCTGTAAATGAGCAGAAGAGAAGTTATCTGTTGTCTTTGAAAGATTTGGAATCACTATTTCTTGAAGACTCCTCGAGTTCTTCAGAACTACATAGAGAAAGGGCATCTTGTTCTGTTCTAGGGACACCAAACTTCAGAGCTAGAGTGTGGAGAAAGGAGCATCGTGTTTCTCCATCATCCACTGCTAAAGTACCGAAAGTTTACAGTCCCAATGTAGTAAAGCCATCCACTTCTGAATCTCAAGATAAGAGGTGTAACAAAGTTAATACTAGAGCCAGCTCAATCCCAATGCCTCGTGCCGTCCTATCCAGCCCTGAAAATGATCTGATGATTGGTAAGAAAAACAGAAAAACAACAGAAAAACCATCAGTCTTGAAGAATCACAATTCAGTTCAGTCCAGACACTCACAGTGTAAGACCGTCGCTAGGCACAGTGGCAACGAAAATCCCATTTGCTCGAGGAAATCCAAGGAAACTGTCGTCGATAGTAAATGTCGATTGGCTGGGAAGAACGGTGTGGCCTACACAGACCGCAATTTCACGTCTAAGAAGACCCCGTAGAAACCAGAGTCCTTGTGGTGATGCTATCATCAAGCATGTAATTAGCTTCTTCCAATAGGGGAGAAATATAAGACTCGAGTCAAGGCTTGCACTGTCTAAATGCTCAACAAGGCAAGAGGTTCCTCGTTCGTAGCATAGCTTACAGATGTTTTGAACTCGAAAACTTGAAATGAATGAAGTTCTAGTAACAACTCGCGAAATTTTCCACTGATATAGCTATGAAACTGATCTAGACCTGCATTTTTATTCATCACTATGTTGTTTGCAACTCCATCTCCAGATTCAACAGCTTTAAAATACAACAGATTCTATCAAAATGCGGGTTCGAACGATCTCCCGAAAGAAAGACGTGTCCGCTATTGTTTATCTCAACCCAACTACAACCTGGTTGTTTCTTAACTCCATTGTTCTTCATTCTTGCCAATATCCTTTCAGCATCTTCT

Coding sequence (CDS)

ATGGTTCAAAATCCAACGCCCATATGCCGCATCTCTGTTCCTGAGATGATGAAGGACCAACCTGCTATCTATCCGAAGGTGAAGGTGAGGGACGAGAACGAACTCGATGATCACCCTGCTGTAAATGAGCAGAAGAGAAGTTATCTGTTGTCTTTGAAAGATTTGGAATCACTATTTCTTGAAGACTCCTCGAGTTCTTCAGAACTACATAGAGAAAGGGCATCTTGTTCTGTTCTAGGGACACCAAACTTCAGAGCTAGAGTGTGGAGAAAGGAGCATCGTGTTTCTCCATCATCCACTGCTAAAGTACCGAAAGTTTACAGTCCCAATGTAGTAAAGCCATCCACTTCTGAATCTCAAGATAAGAGGTGTAACAAAGTTAATACTAGAGCCAGCTCAATCCCAATGCCTCGTGCCGTCCTATCCAGCCCTGAAAATGATCTGATGATTGGTAAGAAAAACAGAAAAACAACAGAAAAACCATCAGTCTTGAAGAATCACAATTCAGTTCAGTCCAGACACTCACAGTGTAAGACCGTCGCTAGGCACAGTGGCAACGAAAATCCCATTTGCTCGAGGAAATCCAAGGAAACTGTCGTCGATAGTAAATGTCGATTGGCTGGGAAGAACGGTGTGGCCTACACAGACCGCAATTTCACGTCTAAGAAGACCCCGTAG

Protein sequence

MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQDKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP
Homology
[Close]
BLAST of Carg06248 vs. NCBI nr
Match: XP_022937402.1 (uncharacterized protein LOC111443687 isoform X3 [Cucurbita moschata])

HSP 1 Score: 419.9 bits (1078), Expect = 5.6e-114
Identity = 221/237 (93.25%), Postives = 223/237 (94.09%), Query Frame = 0 

Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWR-----------KEHRVSPSSTAKVPKVYSP 120
           EDSSSSSELHRERASCSVLGTPNFRARVW            KEHRVSPSSTAKVPKVYSP
Sbjct: 61  EDSSSSSELHRERASCSVLGTPNFRARVWSKFPPNLTENEGKEHRVSPSSTAKVPKVYSP 120

Query: 121 NVVKPSTSESQ-DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHN 180
           NVVKPSTSESQ DKRCN+VNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHN
Sbjct: 121 NVVKPSTSESQADKRCNRVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHN 180

Query: 181 SVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           SVQSRHSQCKTVARHSGNENPICSRKSKETVV+SKCR AGKNGVAYTDRNFTSKKTP
Sbjct: 181 SVQSRHSQCKTVARHSGNENPICSRKSKETVVNSKCRSAGKNGVAYTDRNFTSKKTP 237

[Close]
BLAST of Carg06248 vs. NCBI nr
Match: XP_022974538.1 (uncharacterized protein LOC111473205 isoform X3 [Cucurbita maxima])

HSP 1 Score: 405.2 bits (1040), Expect = 1.4e-109
Identity = 210/226 (92.92%), Postives = 215/226 (95.13%), Query Frame = 0 

Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEM KDQ AIYPKVKVR+ENELDDHPA NEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMRKDQSAIYPKVKVREENELDDHPAANEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           ED SSSSELHRERASCSVLGTPNFRA+VWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDLSSSSELHRERASCSVLGTPNFRAKVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 -DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180
            DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT
Sbjct: 121 ADKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180

Query: 181 VARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           VARHS NENPIC RKSKE VVDSKCR +GKNGVAY D +FTSKK+P
Sbjct: 181 VARHSVNENPICLRKSKEAVVDSKCRSSGKNGVAYRDHSFTSKKSP 226

[Close]
BLAST of Carg06248 vs. NCBI nr
Match: XP_022937417.1 (uncharacterized protein LOC111443687 isoform X5 [Cucurbita moschata])

HSP 1 Score: 404.8 bits (1039), Expect = 1.9e-109
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0 

Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV 180
           DKRCN+VNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV
Sbjct: 121 DKRCNRVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV 180

Query: 181 ARHSGNENPICSRKSKETVVDSKCRLAGKN 211
           ARHSGNENPICSRKSKETVV+SKCR AGKN
Sbjct: 181 ARHSGNENPICSRKSKETVVNSKCRSAGKN 210

[Close]
BLAST of Carg06248 vs. NCBI nr
Match: XP_022937409.1 (uncharacterized protein LOC111443687 isoform X4 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.6e-108
Identity = 207/211 (98.10%), Postives = 209/211 (99.05%), Query Frame = 0 

Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 -DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180
            DKRCN+VNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT
Sbjct: 121 ADKRCNRVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180

Query: 181 VARHSGNENPICSRKSKETVVDSKCRLAGKN 211
           VARHSGNENPICSRKSKETVV+SKCR AGKN
Sbjct: 181 VARHSGNENPICSRKSKETVVNSKCRSAGKN 211

[Close]
BLAST of Carg06248 vs. NCBI nr
Match: XP_023538647.1 (uncharacterized protein LOC111799527 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397.5 bits (1020), Expect = 3.0e-107
Identity = 203/210 (96.67%), Postives = 207/210 (98.57%), Query Frame = 0 

Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVP+MMKDQPAIYPKVKVR+ENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPKMMKDQPAIYPKVKVREENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           EDSS+SSELHRERASCS LGTPNFRA+VWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDSSNSSELHRERASCSDLGTPNFRAKVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV 180
           DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRK TEKPSVLKNHNSVQSRHSQCKTV
Sbjct: 121 DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKPTEKPSVLKNHNSVQSRHSQCKTV 180

Query: 181 ARHSGNENPICSRKSKETVVDSKCRLAGKN 211
           ARHSGNENPICSRKSKETVVDSKCR AGKN
Sbjct: 181 ARHSGNENPICSRKSKETVVDSKCRSAGKN 210

[Close]
BLAST of Carg06248 vs. TAIR10
Match: AT4G21865.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-06
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 101 AKVPKVYSPNVVKPSTSESQDKRCN----------KVNTRASSIPMPRAVLSSPENDLMI 160
           AK+PK+Y P+V+    S+S+ K  N          K  T+AS    PRAV+SSP+ND MI
Sbjct: 44  AKIPKIYIPSVL---MSQSESKEMNKPIRGADIEVKPITKASPTLRPRAVVSSPDNDAMI 103

Query: 161 GKKNRKTTEKPSV-LKNHNSVQSRHSQCKTV 181
           G  N     K    LK+ + ++SR SQ K V
Sbjct: 104 GNMNMIEERKAKKGLKSKDHIKSRASQLKNV 131

[Close]
BLAST of Carg06248 vs. TrEMBL
Match: tr|A0A0A0L861|A0A0A0L861_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134610 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.4e-62
Identity = 151/240 (62.92%), Postives = 164/240 (68.33%), Query Frame = 0 

Query: 1   MVQNPTPICRIS-------VPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLK 60
           MV+N  PICRIS       VPE MKDQ A YPKVKVR+E  LDD P V EQKRSYLLSLK
Sbjct: 1   MVRNTIPICRISVSSTVEAVPEKMKDQSANYPKVKVREEENLDDRPVVYEQKRSYLLSLK 60

Query: 61  DLESLFLEDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVK 120
           DLESLFL+DSS                  N   +V  KEHRVS  S AK+PK  S N +K
Sbjct: 61  DLESLFLQDSS------------------NTPGKV--KEHRVSLLSCAKIPKACSTNEIK 120

Query: 121 PSTSESQ--DKRC------NKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLK 180
           PSTSE Q  ++ C      NK N RASSIPMPRAV+SSPEND MIGKKNRKTTEKPSVLK
Sbjct: 121 PSTSEPQESERSCTIVDEDNKANIRASSIPMPRAVVSSPENDQMIGKKNRKTTEKPSVLK 180

Query: 181 NHNSVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           N NSVQSRHSQCK +ARHS NEN I SR+SK+T  DSKCR  GKNG  Y   +F SK TP
Sbjct: 181 NCNSVQSRHSQCKIIARHSANENSISSRRSKDT-TDSKCRSVGKNGTTYRGGSFMSKTTP 219

[Close]
BLAST of Carg06248 vs. TrEMBL
Match: tr|A0A1S3AW33|A0A1S3AW33_CUCME (uncharacterized protein LOC103483545 OS=Cucumis melo OX=3656 GN=LOC103483545 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 145/240 (60.42%), Postives = 162/240 (67.50%), Query Frame = 0 

Query: 1   MVQNPTPICRIS-------VPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLK 60
           MV+N  PICRIS       VPE MKD+ A YPKVKV++E  LDD P V EQKRSYL SLK
Sbjct: 1   MVRNTIPICRISVSSTVEAVPEKMKDKSANYPKVKVKEEENLDDRPVVYEQKRSYLFSLK 60

Query: 61  DLESLFLEDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVK 120
           DLESLFL+DSS                  N   +V  KEH VSP   AK+PK  S N +K
Sbjct: 61  DLESLFLQDSS------------------NTPGKV--KEHCVSPLYCAKIPKACSTNEIK 120

Query: 121 PSTSESQ--DKRC------NKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLK 180
           PSTSE Q  ++RC      NK N RASSIPMPRAV+SSPEND MIGKKNRKTT++PSVLK
Sbjct: 121 PSTSEPQEAERRCKIVDEENKANIRASSIPMPRAVISSPENDQMIGKKNRKTTKQPSVLK 180

Query: 181 NHNSVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           N NSVQSRHS CK +A H GNENPI SR+SK+T  DSKCR  GKNG  Y   +F SK TP
Sbjct: 181 NCNSVQSRHSLCKIIASHGGNENPISSRRSKDT-TDSKCRSVGKNGTTYMGGSFMSKTTP 219

[Close]
BLAST of Carg06248 vs. TrEMBL
Match: tr|B9SQT4|B9SQT4_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1217400 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.1e-24
Identity = 86/213 (40.38%), Postives = 116/213 (54.46%), Query Frame = 0 

Query: 22  AIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGT 81
           A+YPKVKVR E + DD     E   + LLSLKD++ L L+DS    + +R+         
Sbjct: 17  AMYPKVKVRTEGQ-DDLYVAREHNWTSLLSLKDIQFLLLQDSCFPVKEYRD--------- 76

Query: 82  PNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKP--STSESQDKRC-----NKVNTRASSI 141
                        VSP   AK+PK Y PN++ P  S SE  D +      ++ N RAS +
Sbjct: 77  -------------VSPVPIAKIPKTYVPNILLPTESASEGVDNKSSSDEEDRPNIRASLV 136

Query: 142 PMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRK 201
           P PRAV+SSP+ND +I  KNR    +PS LKNHN ++SRH+QCK V   + +E+P+ + K
Sbjct: 137 PRPRAVISSPDNDALIANKNRVKATQPSALKNHNLIRSRHAQCKVVPSQAIDESPLNTSK 196

Query: 202 SKETVVDSKCRLAGKNGVAYT----DRNFTSKK 224
           SK+T  D K  + G  G A       RN TS K
Sbjct: 197 SKDT-TDKKIDVRGTKGSATVLSSQRRNITSAK 205

[Close]
BLAST of Carg06248 vs. TrEMBL
Match: tr|A0A2C9UDU8|A0A2C9UDU8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G045800 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 84/210 (40.00%), Postives = 117/210 (55.71%), Query Frame = 0 

Query: 23  IYPKVKVRDENELDDHP-AVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGT 82
           +YPKVKVR E + D H  A +E   + LLSLKD++ L L+DS    +  R+         
Sbjct: 1   MYPKVKVRTEGQDDQHAHAAHEYNWNSLLSLKDIQFLLLQDSYFPVKEFRD--------- 60

Query: 83  PNFRARVWRKEHRVSPSSTAKVPKVYSPNVV--KPSTSESQDKRCN-----KVNTRASSI 142
                        VSPSSTA++PK   PN++    S SE  DK+ N     + N RA S+
Sbjct: 61  -------------VSPSSTARIPKPSLPNIILQTESASEEADKKSNFDEEDRPNIRAGSV 120

Query: 143 PMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRK 202
             PRAVLSSP+ND MIG KN     +PS LKNH+SVQSRH+QCK  +  + +++ + +RK
Sbjct: 121 LRPRAVLSSPDNDTMIGNKNSVKAPRPSALKNHHSVQSRHAQCKVASSQAVDDSRLNTRK 180

Query: 203 SKETV-VDSKCRLAGKNGVAYTDRNFTSKK 224
           SK+T   + K +      ++   RN T+ K
Sbjct: 181 SKDTTDTNLKGKKWSTTAISSRRRNITTDK 188

[Close]
BLAST of Carg06248 vs. TrEMBL
Match: tr|A0A067KND6|A0A067KND6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12868 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.8e-23
Identity = 85/218 (38.99%), Postives = 117/218 (53.67%), Query Frame = 0 

Query: 23  IYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGTP 82
           +YPKVKVR + +  D     ++  S LLSLKD++ L L+DS    +  ++          
Sbjct: 37  VYPKVKVRRDEDQKD-----QRNWSSLLSLKDIQFLLLQDSCFPVKEFQD---------- 96

Query: 83  NFRARVWRKEHRVSPSSTAKVPKVYSPNVVKP--STSESQDKRC-----NKVNTRASSIP 142
                       VSP+ TA++PK Y PN+V P  S SE  DK+      N+   RASS+P
Sbjct: 97  ------------VSPTPTARIPKSYVPNIVLPAESASEGADKKGDVDEENRPKIRASSVP 156

Query: 143 MPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRKS 202
            PRAV+SSP+ND +IG KN     KP  LKNHNS+Q+RH+ CK V   + +E+P+ +RKS
Sbjct: 157 RPRAVISSPDNDAVIGNKN-----KPKALKNHNSIQNRHTHCKVVQTRAVDESPLNTRKS 216

Query: 203 KETVVDSKCRLAGKNG--------VAYTDRNFTSKKTP 226
                D K  L GK G        ++   RN T+ K P
Sbjct: 217 NNN-TDRKFDLKGKKGPVPGPATAISSQRRNLTANKKP 221

The following BLAST results are available for this feature:
BLAST of Carg06248 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937402.15.6e-11493.25uncharacterized protein LOC111443687 isoform X3 [Cucurbita moschata][more]
XP_022974538.11.4e-10992.92uncharacterized protein LOC111473205 isoform X3 [Cucurbita maxima][more]
XP_022937417.11.9e-10998.57uncharacterized protein LOC111443687 isoform X5 [Cucurbita moschata][more]
XP_022937409.14.6e-10898.10uncharacterized protein LOC111443687 isoform X4 [Cucurbita moschata][more]
XP_023538647.13.0e-10796.67uncharacterized protein LOC111799527 isoform X4 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg06248 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21865.14.7e-0640.66unknown protein[more]
BLAST of Carg06248 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06248 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L861|A0A0A0L861_CUCSA7.4e-6262.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134610 PE=4 SV=1[more]
tr|A0A1S3AW33|A0A1S3AW33_CUCME1.2e-5960.42uncharacterized protein LOC103483545 OS=Cucumis melo OX=3656 GN=LOC103483545 PE=... [more]
tr|B9SQT4|B9SQT4_RICCO6.1e-2440.38Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1217400 PE=4 SV=1[more]
tr|A0A2C9UDU8|A0A2C9UDU8_MANES1.8e-2340.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G045800 PE=4 SV=... [more]
tr|A0A067KND6|A0A067KND6_JATCU8.8e-2338.99Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12868 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06248-RACarg06248-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..189
NoneNo IPR availablePANTHERPTHR38932FAMILY NOT NAMEDcoord: 24..211

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06248Cla021484Watermelon (97103) v1carwmB0961
Carg06248Csa3G134610Cucumber (Chinese Long) v2carcuB0975
Carg06248MELO3C006376Melon (DHL92) v3.5.1carmeB0941
Carg06248ClCG05G003990Watermelon (Charleston Gray)carwcgB0935
Carg06248CSPI03G11560Wild cucumber (PI 183967)carcpiB0998
Carg06248Cucsa.255810Cucumber (Gy14) v1carcgyB1077
Carg06248CmoCh06G013000Cucurbita moschata (Rifu)carcmoB1288
Carg06248Lsi05G017720Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06248Cp4.1LG08g03190Cucurbita pepo (Zucchini)carcpeB1333
Carg06248MELO3C006376.2Melon (DHL92) v3.6.1carmedB0947
Carg06248CsaV3_3G011680Cucumber (Chinese Long) v3carcucB1003
Carg06248Cla97C05G084620Watermelon (97103) v2carwmbB1008
Carg06248Bhi01G000468Wax gourdcarwgoB1116
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06248Watermelon (97103) v1carwmB0962
Carg06248Watermelon (97103) v2carwmbB1009
Carg06248Watermelon (97103) v2carwmbB1011
Carg06248Wax gourdcarwgoB1114
Carg06248Wax gourdcarwgoB1120
Carg06248Wax gourdcarwgoB1123
Carg06248Silver-seed gourdcarcarB274
Carg06248Silver-seed gourdcarcarB266
Carg06248Silver-seed gourdcarcarB600
Carg06248Silver-seed gourdcarcarB610
Carg06248Silver-seed gourdcarcarB649
Carg06248Cucumber (Gy14) v2carcgybB0945
Carg06248Cucumber (Gy14) v2carcgybB0947
Carg06248Cucumber (Gy14) v2carcgybB0948
Carg06248Cucumber (Gy14) v1carcgyB1080
Carg06248Cucurbita maxima (Rimu)carcmaB1320
Carg06248Cucurbita maxima (Rimu)carcmaB1321
Carg06248Cucurbita maxima (Rimu)carcmaB1322
Carg06248Cucurbita maxima (Rimu)carcmaB1323
Carg06248Cucurbita maxima (Rimu)carcmaB1325
Carg06248Cucurbita maxima (Rimu)carcmaB1327
Carg06248Cucurbita moschata (Rifu)carcmoB1284
Carg06248Cucurbita moschata (Rifu)carcmoB1285
Carg06248Cucurbita moschata (Rifu)carcmoB1287
Carg06248Cucurbita moschata (Rifu)carcmoB1289
Carg06248Cucurbita pepo (Zucchini)carcpeB1328
Carg06248Cucurbita pepo (Zucchini)carcpeB1329
Carg06248Cucurbita pepo (Zucchini)carcpeB1330
Carg06248Cucurbita pepo (Zucchini)carcpeB1331
Carg06248Cucurbita pepo (Zucchini)carcpeB1332
Carg06248Wild cucumber (PI 183967)carcpiB0997
Carg06248Wild cucumber (PI 183967)carcpiB0995
Carg06248Cucumber (Chinese Long) v2carcuB0974
Carg06248Cucumber (Chinese Long) v3carcucB1001
Carg06248Cucumber (Chinese Long) v3carcucB1002
Carg06248Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06248Bottle gourd (USVL1VR-Ls)carlsiB879
Carg06248Melon (DHL92) v3.5.1carmeB0939
Carg06248Melon (DHL92) v3.6.1carmedB0945
Carg06248Watermelon (Charleston Gray)carwcgB0936
Carg06248Watermelon (Charleston Gray)carwcgB0938