Carg06248-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06248-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Atp-dependent rna helicase dbp-7
Location	Cucurbita_argyrosperma_scaffold_016 : 473183 .. 475460 (+)
Sequence length	1391

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTGATTCTGTTCTTAACTCGGGAGGAGCAAAAGGTAAAGGCCAATGGGGTCCGCCACTGCGAAGGTTTCAGACAAATGCGCCCTTTGGCGTTCGTTGACCCAACGATCACTTCTGATTTGATTCATTTCAATTTCTGAAAACCCCAAAAGCCGTTTCTCCCAAAACTTGGCTTGGCGCACTACTCATTCTTTCCTCTCTTTGAAGACACGCATTGAACTCGTGATTTCTGGGTATCTTCTTCTTCTTCTGCTACTGATTCCTTTTCGATGGTTCAAAATCCAACGCCCATATGCCGCATCTCTGTTCCTGAGATGATGAAGGACCAACCTGCTAGTGGGTTTGATCTAATCTGGGTTTGTTTTTGATCTTTGTGTTCTTGCTCTTTGTGTTGATTTTTGTTGTTTTTGTTGGGCTTGCAAGTCTATCCGAAGGTGAAGGTGAGGGACGAGAACGAACTCGATGATCACCCTGCTGTAAATGAGCAGAAGAGAAGTTATCTGTTGTCTTTGAAAGATTTGGAATCACTATTTCTTGAAGACTCCTCGAGTTCTTCAGGTACTCTCTAGTTTCTGGGAATTGTTATAAATTCATGGGTCTGTTTCTGCTTGAACGAAGCATCTTTGTGCTGTTGTCTTTGTTTCTAATCTTTTCGTGTTGTGGAAGCTGAAAAATGAAAAACCAGAAGTTGACAGTCAGTTTAGATAGTTATATCACAAATTTGAAGTTTAAATGTTGATATTAGCTTATTAGCTTTCTTTTTCAGAACTACATAGAGAAAGGGCATCTTGTTCTGTTCTAGGGACACCAAACTTCAGAGCTAGAGTGTGGAGTAAGTTTCCACCAAATCTGACAGAAAATGAAGTTTTTGAGTAACCTATGATTGTCATCGTCAAAAAAACAACTCATCCCAATTTTGATTTTGCTTGGAATTTGAAGATATTTCAAACGTACCTTTGATCTTTCCTAAACGTTTCAAAAGTATCCTTAAAAAGTAGAAATCATATAGCTTGTTAAACACAAAACCGACATGGCAGCAACTATAATGCTTGCTTGAATTAGGTATGAGAGAATAACATTCAAATACATTAGTTTTTTAGAATAACACCAATCATAATAAATGTTGAAAATTTCACTCTCTGAATTTTGACCTCACGGTTTTATTGCAAAAATGTTGGTATTCACAGGAAAGGAGCATCGTGTTTCTCCATCATCCACTGCTAAAGTACCGAAAGTTTACAGTCCCAATGTAGTAAAGCCATCCACTTCTGAATCTCAAGGTACGATTCTAACATTATATTTTCATCCCTACAAACAAAAAACAGTAGATTTTCATTCTGTTCTGAAATATCAGCTATGTTTGGTTTGCTAAAGCAGATAAGAGGTGTAACAAAGTTAATACTAGAGCCAGCTCAATCCCAATGCCTCGTGCCGTCCTATCCAGCCCTGGTATTTCCTACCTTCTATGAACTAGTCTCACTATGATTCATCTCTATGTTTATGGGTTCTTGAGCATCTTTAAGTTAATCAAAATGTCTCTCGTGAATATCATTTTATTAATTGAAGCTTTCTATTCTGTTTTTCTCCAGAAAATGATCTGATGATTGGTAAGAAAAACAGAAAAACAACAGAAAAACCATCAGTCTTGAAGAATCACAATTCAGTTCAGTCCAGACACTCACAGTGTAAGACCGTCGCTAGGCACAGTGGCAACGAAAATCCCATTTGCTCGAGGAAATCCAAGGAAACTGTCGTCGATAGTAAATGTCGATTGGCTGGGAAGAACGGTGTGGCCTACACAGACCGCAATTTCACGTCTAAGAAGACCCCGTAGAAACCAGAGTCCTTGTGGTGATGCTATCATCAAGCATGTAATTAGCTTCTTCCAATAGGGGAGAAATATAAGACTCGAGTCAAGGCTTGCACTGTCTAAATGCTCAACAAGGCAAGAGGTTCCTCGTTCGTAGCATAGCTTACAGATGTTTTGAACTCGAAAACTTGAAATGAATGAAGTTCTAGTAACAACTCGCGAAATTTTCCACTGATATAGCTATGAAACTGATCTAGACCTGCATTTTTATTCATCACTATGTTGTTTGCAACTCCATCTCCAGATTCAACAGCTTTAAAATACAACAGATTCTATCAAAATGCGGGTTCGAACGATCTCCCGAAAGAAAGACGTGTCCGCTATTGTTTATCTCAACCCAACTACAACCTGGTTGTTTCTTAACTCCATTGTTCTTCATTCTTGCCAATATCCTTTCAGCATCTTCT

mRNA sequence

AATTTGATTCTGTTCTTAACTCGGGAGGAGCAAAAGGTAAAGGCCAATGGGGTCCGCCACTGCGAAGGTTTCAGACAAATGCGCCCTTTGGCGTTCGTTGACCCAACGATCACTTCTGATTTGATTCATTTCAATTTCTGAAAACCCCAAAAGCCGTTTCTCCCAAAACTTGGCTTGGCGCACTACTCATTCTTTCCTCTCTTTGAAGACACGCATTGAACTCGTGATTTCTGGGTATCTTCTTCTTCTTCTGCTACTGATTCCTTTTCGATGGTTCAAAATCCAACGCCCATATGCCGCATCTCTGTTCCTGAGATGATGAAGGACCAACCTGCTATCTATCCGAAGGTGAAGGTGAGGGACGAGAACGAACTCGATGATCACCCTGCTGTAAATGAGCAGAAGAGAAGTTATCTGTTGTCTTTGAAAGATTTGGAATCACTATTTCTTGAAGACTCCTCGAGTTCTTCAGAACTACATAGAGAAAGGGCATCTTGTTCTGTTCTAGGGACACCAAACTTCAGAGCTAGAGTGTGGAGAAAGGAGCATCGTGTTTCTCCATCATCCACTGCTAAAGTACCGAAAGTTTACAGTCCCAATGTAGTAAAGCCATCCACTTCTGAATCTCAAGATAAGAGGTGTAACAAAGTTAATACTAGAGCCAGCTCAATCCCAATGCCTCGTGCCGTCCTATCCAGCCCTGAAAATGATCTGATGATTGGTAAGAAAAACAGAAAAACAACAGAAAAACCATCAGTCTTGAAGAATCACAATTCAGTTCAGTCCAGACACTCACAGTGTAAGACCGTCGCTAGGCACAGTGGCAACGAAAATCCCATTTGCTCGAGGAAATCCAAGGAAACTGTCGTCGATAGTAAATGTCGATTGGCTGGGAAGAACGGTGTGGCCTACACAGACCGCAATTTCACGTCTAAGAAGACCCCGTAGAAACCAGAGTCCTTGTGGTGATGCTATCATCAAGCATGTAATTAGCTTCTTCCAATAGGGGAGAAATATAAGACTCGAGTCAAGGCTTGCACTGTCTAAATGCTCAACAAGGCAAGAGGTTCCTCGTTCGTAGCATAGCTTACAGATGTTTTGAACTCGAAAACTTGAAATGAATGAAGTTCTAGTAACAACTCGCGAAATTTTCCACTGATATAGCTATGAAACTGATCTAGACCTGCATTTTTATTCATCACTATGTTGTTTGCAACTCCATCTCCAGATTCAACAGCTTTAAAATACAACAGATTCTATCAAAATGCGGGTTCGAACGATCTCCCGAAAGAAAGACGTGTCCGCTATTGTTTATCTCAACCCAACTACAACCTGGTTGTTTCTTAACTCCATTGTTCTTCATTCTTGCCAATATCCTTTCAGCATCTTCT

Coding sequence (CDS)

ATGGTTCAAAATCCAACGCCCATATGCCGCATCTCTGTTCCTGAGATGATGAAGGACCAACCTGCTATCTATCCGAAGGTGAAGGTGAGGGACGAGAACGAACTCGATGATCACCCTGCTGTAAATGAGCAGAAGAGAAGTTATCTGTTGTCTTTGAAAGATTTGGAATCACTATTTCTTGAAGACTCCTCGAGTTCTTCAGAACTACATAGAGAAAGGGCATCTTGTTCTGTTCTAGGGACACCAAACTTCAGAGCTAGAGTGTGGAGAAAGGAGCATCGTGTTTCTCCATCATCCACTGCTAAAGTACCGAAAGTTTACAGTCCCAATGTAGTAAAGCCATCCACTTCTGAATCTCAAGATAAGAGGTGTAACAAAGTTAATACTAGAGCCAGCTCAATCCCAATGCCTCGTGCCGTCCTATCCAGCCCTGAAAATGATCTGATGATTGGTAAGAAAAACAGAAAAACAACAGAAAAACCATCAGTCTTGAAGAATCACAATTCAGTTCAGTCCAGACACTCACAGTGTAAGACCGTCGCTAGGCACAGTGGCAACGAAAATCCCATTTGCTCGAGGAAATCCAAGGAAACTGTCGTCGATAGTAAATGTCGATTGGCTGGGAAGAACGGTGTGGCCTACACAGACCGCAATTTCACGTCTAAGAAGACCCCGTAG

Protein sequence

MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQDKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP

Homology

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BLAST of Carg06248-RA vs. NCBI nr
Match: XP_022937402.1 (uncharacterized protein LOC111443687 isoform X3 [Cucurbita moschata])

HSP 1 Score: 419.9 bits (1078), Expect = 5.6e-114
Identity = 221/237 (93.25%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWR-----------KEHRVSPSSTAKVPKVYSP 120
           EDSSSSSELHRERASCSVLGTPNFRARVW            KEHRVSPSSTAKVPKVYSP
Sbjct: 61  EDSSSSSELHRERASCSVLGTPNFRARVWSKFPPNLTENEGKEHRVSPSSTAKVPKVYSP 120

Query: 121 NVVKPSTSESQ-DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHN 180
           NVVKPSTSESQ DKRCN+VNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHN
Sbjct: 121 NVVKPSTSESQADKRCNRVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHN 180

Query: 181 SVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           SVQSRHSQCKTVARHSGNENPICSRKSKETVV+SKCR AGKNGVAYTDRNFTSKKTP
Sbjct: 181 SVQSRHSQCKTVARHSGNENPICSRKSKETVVNSKCRSAGKNGVAYTDRNFTSKKTP 237

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BLAST of Carg06248-RA vs. NCBI nr
Match: XP_022974538.1 (uncharacterized protein LOC111473205 isoform X3 [Cucurbita maxima])

HSP 1 Score: 405.2 bits (1040), Expect = 1.4e-109
Identity = 210/226 (92.92%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEM KDQ AIYPKVKVR+ENELDDHPA NEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMRKDQSAIYPKVKVREENELDDHPAANEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           ED SSSSELHRERASCSVLGTPNFRA+VWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDLSSSSELHRERASCSVLGTPNFRAKVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 -DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180
            DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT
Sbjct: 121 ADKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180

Query: 181 VARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           VARHS NENPIC RKSKE VVDSKCR +GKNGVAY D +FTSKK+P
Sbjct: 181 VARHSVNENPICLRKSKEAVVDSKCRSSGKNGVAYRDHSFTSKKSP 226

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BLAST of Carg06248-RA vs. NCBI nr
Match: XP_022937417.1 (uncharacterized protein LOC111443687 isoform X5 [Cucurbita moschata])

HSP 1 Score: 404.8 bits (1039), Expect = 1.9e-109
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV 180
           DKRCN+VNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV
Sbjct: 121 DKRCNRVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV 180

Query: 181 ARHSGNENPICSRKSKETVVDSKCRLAGKN 211
           ARHSGNENPICSRKSKETVV+SKCR AGKN
Sbjct: 181 ARHSGNENPICSRKSKETVVNSKCRSAGKN 210

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BLAST of Carg06248-RA vs. NCBI nr
Match: XP_022937409.1 (uncharacterized protein LOC111443687 isoform X4 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 4.6e-108
Identity = 207/211 (98.10%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 -DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180
            DKRCN+VNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT
Sbjct: 121 ADKRCNRVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKT 180

Query: 181 VARHSGNENPICSRKSKETVVDSKCRLAGKN 211
           VARHSGNENPICSRKSKETVV+SKCR AGKN
Sbjct: 181 VARHSGNENPICSRKSKETVVNSKCRSAGKN 211

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BLAST of Carg06248-RA vs. NCBI nr
Match: XP_023538647.1 (uncharacterized protein LOC111799527 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397.5 bits (1020), Expect = 3.0e-107
Identity = 203/210 (96.67%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MVQNPTPICRISVPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFL 60
           MVQNPTPICRISVP+MMKDQPAIYPKVKVR+ENELDDHPAVNEQKRSYLLSLKDLESLFL
Sbjct: 1   MVQNPTPICRISVPKMMKDQPAIYPKVKVREENELDDHPAVNEQKRSYLLSLKDLESLFL 60

Query: 61  EDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120
           EDSS+SSELHRERASCS LGTPNFRA+VWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ
Sbjct: 61  EDSSNSSELHRERASCSDLGTPNFRAKVWRKEHRVSPSSTAKVPKVYSPNVVKPSTSESQ 120

Query: 121 DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTV 180
           DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRK TEKPSVLKNHNSVQSRHSQCKTV
Sbjct: 121 DKRCNKVNTRASSIPMPRAVLSSPENDLMIGKKNRKPTEKPSVLKNHNSVQSRHSQCKTV 180

Query: 181 ARHSGNENPICSRKSKETVVDSKCRLAGKN 211
           ARHSGNENPICSRKSKETVVDSKCR AGKN
Sbjct: 181 ARHSGNENPICSRKSKETVVDSKCRSAGKN 210

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BLAST of Carg06248-RA vs. TAIR10
Match: AT4G21865.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-06
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 101 AKVPKVYSPNVVKPSTSESQDKRCN----------KVNTRASSIPMPRAVLSSPENDLMI 160
           AK+PK+Y P+V+    S+S+ K  N          K  T+AS    PRAV+SSP+ND MI
Sbjct: 44  AKIPKIYIPSVL---MSQSESKEMNKPIRGADIEVKPITKASPTLRPRAVVSSPDNDAMI 103

Query: 161 GKKNRKTTEKPSV-LKNHNSVQSRHSQCKTV 181
           G  N     K    LK+ + ++SR SQ K V
Sbjct: 104 GNMNMIEERKAKKGLKSKDHIKSRASQLKNV 131

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BLAST of Carg06248-RA vs. TrEMBL
Match: tr|A0A0A0L861|A0A0A0L861_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134610 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.4e-62
Identity = 151/240 (62.92%), Postives = 164/240 (68.33%), Query Frame = 0


Query: 1   MVQNPTPICRIS-------VPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLK 60
           MV+N  PICRIS       VPE MKDQ A YPKVKVR+E  LDD P V EQKRSYLLSLK
Sbjct: 1   MVRNTIPICRISVSSTVEAVPEKMKDQSANYPKVKVREEENLDDRPVVYEQKRSYLLSLK 60

Query: 61  DLESLFLEDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVK 120
           DLESLFL+DSS                  N   +V  KEHRVS  S AK+PK  S N +K
Sbjct: 61  DLESLFLQDSS------------------NTPGKV--KEHRVSLLSCAKIPKACSTNEIK 120

Query: 121 PSTSESQ--DKRC------NKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLK 180
           PSTSE Q  ++ C      NK N RASSIPMPRAV+SSPEND MIGKKNRKTTEKPSVLK
Sbjct: 121 PSTSEPQESERSCTIVDEDNKANIRASSIPMPRAVVSSPENDQMIGKKNRKTTEKPSVLK 180

Query: 181 NHNSVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           N NSVQSRHSQCK +ARHS NEN I SR+SK+T  DSKCR  GKNG  Y   +F SK TP
Sbjct: 181 NCNSVQSRHSQCKIIARHSANENSISSRRSKDT-TDSKCRSVGKNGTTYRGGSFMSKTTP 219

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BLAST of Carg06248-RA vs. TrEMBL
Match: tr|A0A1S3AW33|A0A1S3AW33_CUCME (uncharacterized protein LOC103483545 OS=Cucumis melo OX=3656 GN=LOC103483545 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 145/240 (60.42%), Postives = 162/240 (67.50%), Query Frame = 0


Query: 1   MVQNPTPICRIS-------VPEMMKDQPAIYPKVKVRDENELDDHPAVNEQKRSYLLSLK 60
           MV+N  PICRIS       VPE MKD+ A YPKVKV++E  LDD P V EQKRSYL SLK
Sbjct: 1   MVRNTIPICRISVSSTVEAVPEKMKDKSANYPKVKVKEEENLDDRPVVYEQKRSYLFSLK 60

Query: 61  DLESLFLEDSSSSSELHRERASCSVLGTPNFRARVWRKEHRVSPSSTAKVPKVYSPNVVK 120
           DLESLFL+DSS                  N   +V  KEH VSP   AK+PK  S N +K
Sbjct: 61  DLESLFLQDSS------------------NTPGKV--KEHCVSPLYCAKIPKACSTNEIK 120

Query: 121 PSTSESQ--DKRC------NKVNTRASSIPMPRAVLSSPENDLMIGKKNRKTTEKPSVLK 180
           PSTSE Q  ++RC      NK N RASSIPMPRAV+SSPEND MIGKKNRKTT++PSVLK
Sbjct: 121 PSTSEPQEAERRCKIVDEENKANIRASSIPMPRAVISSPENDQMIGKKNRKTTKQPSVLK 180

Query: 181 NHNSVQSRHSQCKTVARHSGNENPICSRKSKETVVDSKCRLAGKNGVAYTDRNFTSKKTP 226
           N NSVQSRHS CK +A H GNENPI SR+SK+T  DSKCR  GKNG  Y   +F SK TP
Sbjct: 181 NCNSVQSRHSLCKIIASHGGNENPISSRRSKDT-TDSKCRSVGKNGTTYMGGSFMSKTTP 219

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BLAST of Carg06248-RA vs. TrEMBL
Match: tr|B9SQT4|B9SQT4_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1217400 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.1e-24
Identity = 86/213 (40.38%), Postives = 116/213 (54.46%), Query Frame = 0


Query: 22  AIYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGT 81
           A+YPKVKVR E + DD     E   + LLSLKD++ L L+DS    + +R+         
Sbjct: 17  AMYPKVKVRTEGQ-DDLYVAREHNWTSLLSLKDIQFLLLQDSCFPVKEYRD--------- 76

Query: 82  PNFRARVWRKEHRVSPSSTAKVPKVYSPNVVKP--STSESQDKRC-----NKVNTRASSI 141
                        VSP   AK+PK Y PN++ P  S SE  D +      ++ N RAS +
Sbjct: 77  -------------VSPVPIAKIPKTYVPNILLPTESASEGVDNKSSSDEEDRPNIRASLV 136

Query: 142 PMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRK 201
           P PRAV+SSP+ND +I  KNR    +PS LKNHN ++SRH+QCK V   + +E+P+ + K
Sbjct: 137 PRPRAVISSPDNDALIANKNRVKATQPSALKNHNLIRSRHAQCKVVPSQAIDESPLNTSK 196

Query: 202 SKETVVDSKCRLAGKNGVAYT----DRNFTSKK 224
           SK+T  D K  + G  G A       RN TS K
Sbjct: 197 SKDT-TDKKIDVRGTKGSATVLSSQRRNITSAK 205

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BLAST of Carg06248-RA vs. TrEMBL
Match: tr|A0A2C9UDU8|A0A2C9UDU8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G045800 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 84/210 (40.00%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 23  IYPKVKVRDENELDDHP-AVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGT 82
           +YPKVKVR E + D H  A +E   + LLSLKD++ L L+DS    +  R+         
Sbjct: 1   MYPKVKVRTEGQDDQHAHAAHEYNWNSLLSLKDIQFLLLQDSYFPVKEFRD--------- 60

Query: 83  PNFRARVWRKEHRVSPSSTAKVPKVYSPNVV--KPSTSESQDKRCN-----KVNTRASSI 142
                        VSPSSTA++PK   PN++    S SE  DK+ N     + N RA S+
Sbjct: 61  -------------VSPSSTARIPKPSLPNIILQTESASEEADKKSNFDEEDRPNIRAGSV 120

Query: 143 PMPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRK 202
             PRAVLSSP+ND MIG KN     +PS LKNH+SVQSRH+QCK  +  + +++ + +RK
Sbjct: 121 LRPRAVLSSPDNDTMIGNKNSVKAPRPSALKNHHSVQSRHAQCKVASSQAVDDSRLNTRK 180

Query: 203 SKETV-VDSKCRLAGKNGVAYTDRNFTSKK 224
           SK+T   + K +      ++   RN T+ K
Sbjct: 181 SKDTTDTNLKGKKWSTTAISSRRRNITTDK 188

[Close]

BLAST of Carg06248-RA vs. TrEMBL
Match: tr|A0A067KND6|A0A067KND6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12868 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.8e-23
Identity = 85/218 (38.99%), Postives = 117/218 (53.67%), Query Frame = 0


Query: 23  IYPKVKVRDENELDDHPAVNEQKRSYLLSLKDLESLFLEDSSSSSELHRERASCSVLGTP 82
           +YPKVKVR + +  D     ++  S LLSLKD++ L L+DS    +  ++          
Sbjct: 37  VYPKVKVRRDEDQKD-----QRNWSSLLSLKDIQFLLLQDSCFPVKEFQD---------- 96

Query: 83  NFRARVWRKEHRVSPSSTAKVPKVYSPNVVKP--STSESQDKRC-----NKVNTRASSIP 142
                       VSP+ TA++PK Y PN+V P  S SE  DK+      N+   RASS+P
Sbjct: 97  ------------VSPTPTARIPKSYVPNIVLPAESASEGADKKGDVDEENRPKIRASSVP 156

Query: 143 MPRAVLSSPENDLMIGKKNRKTTEKPSVLKNHNSVQSRHSQCKTVARHSGNENPICSRKS 202
            PRAV+SSP+ND +IG KN     KP  LKNHNS+Q+RH+ CK V   + +E+P+ +RKS
Sbjct: 157 RPRAVISSPDNDAVIGNKN-----KPKALKNHNSIQNRHTHCKVVQTRAVDESPLNTRKS 216

Query: 203 KETVVDSKCRLAGKNG--------VAYTDRNFTSKKTP 226
                D K  L GK G        ++   RN T+ K P
Sbjct: 217 NNN-TDRKFDLKGKKGPVPGPATAISSQRRNLTANKKP 221

The following BLAST results are available for this feature:

BLAST of Carg06248-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937402.1	5.6e-114	93.25	uncharacterized protein LOC111443687 isoform X3 [Cucurbita moschata]	[more]
XP_022974538.1	1.4e-109	92.92	uncharacterized protein LOC111473205 isoform X3 [Cucurbita maxima]	[more]
XP_022937417.1	1.9e-109	98.57	uncharacterized protein LOC111443687 isoform X5 [Cucurbita moschata]	[more]
XP_022937409.1	4.6e-108	98.10	uncharacterized protein LOC111443687 isoform X4 [Cucurbita moschata]	[more]
XP_023538647.1	3.0e-107	96.67	uncharacterized protein LOC111799527 isoform X4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg06248-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21865.1	4.7e-06	40.66	unknown protein	[more]

BLAST of Carg06248-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06248-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L861\|A0A0A0L861_CUCSA	7.4e-62	62.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134610 PE=4 SV=1	[more]
tr\|A0A1S3AW33\|A0A1S3AW33_CUCME	1.2e-59	60.42	uncharacterized protein LOC103483545 OS=Cucumis melo OX=3656 GN=LOC103483545 PE=...	[more]
tr\|B9SQT4\|B9SQT4_RICCO	6.1e-24	40.38	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1217400 PE=4 SV=1	[more]
tr\|A0A2C9UDU8\|A0A2C9UDU8_MANES	1.8e-23	40.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G045800 PE=4 SV=...	[more]
tr\|A0A067KND6\|A0A067KND6_JATCU	8.8e-23	38.99	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12868 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg06248	Carg06248	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06248-RA.exon.1	Carg06248-RA.exon.1	exon
Carg06248-RA.exon.2	Carg06248-RA.exon.2	exon
Carg06248-RA.exon.3	Carg06248-RA.exon.3	exon
Carg06248-RA.exon.4	Carg06248-RA.exon.4	exon
Carg06248-RA.exon.5	Carg06248-RA.exon.5	exon
Carg06248-RA.exon.6	Carg06248-RA.exon.6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06248-RA.five_prime_UTR.1	Carg06248-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06248-RA.CDS.1	Carg06248-RA.CDS.1	CDS
Carg06248-RA.CDS.2	Carg06248-RA.CDS.2	CDS
Carg06248-RA.CDS.3	Carg06248-RA.CDS.3	CDS
Carg06248-RA.CDS.4	Carg06248-RA.CDS.4	CDS
Carg06248-RA.CDS.5	Carg06248-RA.CDS.5	CDS
Carg06248-RA.CDS.6	Carg06248-RA.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06248-RA.three_prime_UTR.1	Carg06248-RA.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg06248-RA	Carg06248-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..189
None	No IPR available	PANTHER	PTHR38932	FAMILY NOT NAMED	coord: 24..211