Carg05839 (gene) Silver-seed gourd

Overview
NameCarg05839
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCURVATURE THYLAKOID chloroplastic
LocationCucurbita_argyrosperma_scaffold_033 : 1336361 .. 1339032 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCCGCCATGGCCATGGAGCTCTCTGCATCCCGACCCATTTCTAACCTACCCCTTTTCTCTACTGTTCTCGCCGGAAACCCGCAGCTCCGTCCGAGGCACGCTCTTCCTCTCAGAATCGCCATAGTCTCCCGCTCTACTGGGAGCCTTCACTTCCGTATGTTCTCCATTCATTACATTCTCAGTGTATTCAAAACATTCCCCTAGGTTGTATTGTGGTGTTCTCTACTTTTTAGTTGAATTTCTGTGTGTCGTTTGTGGTTTTTTCATTTTCTCGATTGATTGCTTTATGCTTTTCTTTGCTTTGTCCGCACTGTTCTTTATCGATTCTTCTGGTATAACGATGAGCTGATTAGCAATTTCGTTTGGATGTTGGGGGAATGTTACATGCATGTGAATTTTGAAGAGTTTTCTTTTTCTCAATTCGTTCCTAGGATGTCGTCCTTTTTCTGTTTCGTTGCCAAGAGCAGCAGCCTCTGATGATTCAAATGGTTATCGACCATTCATTACTGAAGAACGGGATGGTCCGATAATCTTGGAAGATTCTCCTGCTGAGAAGCTCCCATCCGACGAAATGGCGTCATCAGAAGAACCAGTTGAGGGTGCGCAAGAACAGGCGTTCGATTTATGGAACGGTCTTCAAGTAAGGACTTATATTGAAGCCATGTGATTGTAATTTATCATGAATTTTTTCAATATAAATGTGTTAAATCCGTAAGTAAAATGTTTAAAGCCGTCTCCTATTTTTTTAAAAAAATTCAACAACAGAATGATTTAACTTCAAAGCTACTTGGTTTTTGAATATGTTGGTTGTTTGTTTATTTATTTATTTGCTTCCAACATCTTCCCGTGGCTTAGGCTATGGCTAGATCCCACTGTTCAATGCCTTTTGTATCTTTGACAATTGTGTATGTGTGTGTCATTACTTGAGTAATCGGGGTTTTCTTTTATTACAATTTTTGGATGGCTTCTGCCATTTTTTAAATAAATAGAAATGTTTTGGGTTTTTGCCTTCAACTTTTTCAGAGTTAGTTGCAGTGATGATATCATCAAACTTGATAGCATATTCCAGTGCTACATGATAGGTCGACAATTATGTCGACCTGAGCGGTTAATCGAGCAACCTAACTTCACTTATTGGTTTTTTATCGTTGAATTTCTTTATCTTCAAAATTTGAAAACTTTTGTTTTGTTAATTTTTTCCTATTTGCATGAATTATGTCTTAATGTGCTCTGAGGGTTTCTGATAGATTCATATAATGTGCCTCTGAGGAACAAGTTCCTCATATTGTGTCTTAAATGTACTGAGGTTTTCATTTTCGGTTGTGATTACTTTTGCTTGCAGTTCGAGTCTGTTGATGTATACAATCTTATCCTATATGGTTCTGGTGCTTTTTTGGGCCTTTGGTTGGTTTCAGCCATTGTTGGTGCTATTGATTCCATCCCAGTGGTGAGTAGTTCTTACATTAATCTCTGTTAGAGTTTGTATTTCCTTAGAACTGCAATTTTAGGGGGTCCATTGGTAAAGTTCTTTTTCATATGAATTTTTAACCGTTGAGTCTTGTAATCTAGGTTCCTAAGCTGTTGGAAGTTGTGGGGCTTGGTTACACGGTGTGGTTCACAGCTCGCTATTTGTTATTGAAGGTAGTTGCTTAAATTGGTTTGTTTTGAAATCCTGCACTTCCTCCAAATGTGTGATAAATGAGCTAATTTCTCTTGTTTGCGACCTTTCAGGAAAGTAGAGATGAATTGGCTGCCAAGATCGATGAGTTAAAGGACCAGGTTGTCGGTTCGGATTGACGTCGGATTTGGTTGGAAAATTTTTCCTTTTATACTTCTTATTAGGTTGTTAGTTATCTTTGCATAGATATCTTTACATCCTCTTGAATGGAAATAAGCGAATATTGCATTGATTGAGTATTGTTTTGTTTGTTTAATAGGAAAGAGAACGAGAATGATTGTAAATCTTTCACATGTTCAATAACACAGAGTAGGCTTTTATGCAAAATGGGAATAGGGGATGAGATTGATGGGATTTCTTATGGAGATGCTTGTTTACTATTGAGGTGGTGGAGGTAGGCAATAATCTAAAGTTCATTTATTTTGTGTGTAAACCATGAACTTGTTGAGTGATGTCTTGACTCAGCGGTTGAACTCAGATGAAACGAGTTGATTGGAGAGAAGGTCGAAATTCTAACGTTGGTCCCTTGTTTTTGGAAGGTTTAATCGAGTCGTGGTAGCTTCGAGAGTAAGGTATTTGGCCTTCTATGAAACCATTTAGATGTTAGAAGTTGGGTTTGTTTTCTCACCATTTCTTTTCACGTTTTCATTTCATTGAAGGGAGAGAAAATCTTCACTCTTTAAGAGACCTCCAAAACAATCAAAGTATTGGGAAAAAGATGGAAATCTGTCAAACAAGCCTCTTCCTCTGTTTCCCTTTTGACCAAATCTCTTACCCCTTGTAGGTTTGTTGTTCATATGTTGAATTTTATTTGCTTTCTTCTGTGGTTTTTTCCGAATTTGCTCTACATTTTTTAACTTCAGGGCGCACATGAGCATTATTAGCCACTGAATGCTTATTCCTGCCCCTCGTTTAATAGACAAATGAGCAAACTAAAAGGCAGCAAAGCAGCGTTTGTCCTCATCCATTTTCTTTACCCCTTTTACATATA

mRNA sequence

TCTCCCGCCATGGCCATGGAGCTCTCTGCATCCCGACCCATTTCTAACCTACCCCTTTTCTCTACTGTTCTCGCCGGAAACCCGCAGCTCCGTCCGAGGCACGCTCTTCCTCTCAGAATCGCCATAGTCTCCCGCTCTACTGGGAGCCTTCACTTCCGATGTCGTCCTTTTTCTGTTTCGTTGCCAAGAGCAGCAGCCTCTGATGATTCAAATGGTTATCGACCATTCATTACTGAAGAACGGGATGGTCCGATAATCTTGGAAGATTCTCCTGCTGAGAAGCTCCCATCCGACGAAATGGCGTCATCAGAAGAACCAGTTGAGGGTGCGCAAGAACAGGCGTTCGATTTATGGAACGGTCTTCAATTCGAGTCTGTTGATGTATACAATCTTATCCTATATGGTTCTGGTGCTTTTTTGGGCCTTTGGTTGGTTTCAGCCATTGTTGGTGCTATTGATTCCATCCCAGTGGTTCCTAAGCTGTTGGAAGTTGTGGGGCTTGGTTACACGGTGTGGTTCACAGCTCGCTATTTGTTATTGAAGGAAAGTAGAGATGAATTGGCTGCCAAGATCGATGAGTTAAAGGACCAGGTTGTCGGTTCGGATTGACGTCGGATTTGGTTGGAAAATTTTTCCTTTTATACTTCTTATTAGGTTGTTAGTTATCTTTGCATAGATATCTTTACATCCTCTTGAATGGAAATAAGCGAATATTGCATTGATTGAGTATTGTTTTGTTTGTTTAATAGGAAAGAGAACGAGAATGATTGTAAATCTTTCACATGTTCAATAACACAGAGTAGGCTTTTATGCAAAATGGGAATAGGGGATGAGATTGATGGGATTTCTTATGGAGATGCTTGTTTACTATTGAGGTGGTGGAGGTAGGCAATAATCTAAAGTTCATTTATTTTGTGTGTAAACCATGAACTTGTTGAGTGATGTCTTGACTCAGCGGTTGAACTCAGATGAAACGAGTTGATTGGAGAGAAGGTCGAAATTCTAACGTTGGTCCCTTGTTTTTGGAAGGTTTAATCGAGTCGTGGTAGCTTCGAGAGTAAGGTATTTGGCCTTCTATGAAACCATTTAGATGTTAGAAGTTGGGTTTGTTTTCTCACCATTTCTTTTCACGTTTTCATTTCATTGAAGGGAGAGAAAATCTTCACTCTTTAAGAGACCTCCAAAACAATCAAAGTATTGGGAAAAAGATGGAAATCTGTCAAACAAGCCTCTTCCTCTGTTTCCCTTTTGACCAAATCTCTTACCCCTTGTAGGTTTGTTGTTCATATGTTGAATTTTATTTGCTTTCTTCTGTGGTTTTTTCCGAATTTGCTCTACATTTTTTAACTTCAGGGCGCACATGAGCATTATTAGCCACTGAATGCTTATTCCTGCCCCTCGTTTAATAGACAAATGAGCAAACTAAAAGGCAGCAAAGCAGCGTTTGTCCTCATCCATTTTCTTTACCCCTTTTACATATA

Coding sequence (CDS)

ATGGCCATGGAGCTCTCTGCATCCCGACCCATTTCTAACCTACCCCTTTTCTCTACTGTTCTCGCCGGAAACCCGCAGCTCCGTCCGAGGCACGCTCTTCCTCTCAGAATCGCCATAGTCTCCCGCTCTACTGGGAGCCTTCACTTCCGATGTCGTCCTTTTTCTGTTTCGTTGCCAAGAGCAGCAGCCTCTGATGATTCAAATGGTTATCGACCATTCATTACTGAAGAACGGGATGGTCCGATAATCTTGGAAGATTCTCCTGCTGAGAAGCTCCCATCCGACGAAATGGCGTCATCAGAAGAACCAGTTGAGGGTGCGCAAGAACAGGCGTTCGATTTATGGAACGGTCTTCAATTCGAGTCTGTTGATGTATACAATCTTATCCTATATGGTTCTGGTGCTTTTTTGGGCCTTTGGTTGGTTTCAGCCATTGTTGGTGCTATTGATTCCATCCCAGTGGTTCCTAAGCTGTTGGAAGTTGTGGGGCTTGGTTACACGGTGTGGTTCACAGCTCGCTATTTGTTATTGAAGGAAAGTAGAGATGAATTGGCTGCCAAGATCGATGAGTTAAAGGACCAGGTTGTCGGTTCGGATTGA

Protein sequence

MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPRAAASDDSNGYRPFITEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQFESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD
Homology
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BLAST of Carg05839 vs. NCBI nr
Match: XP_023551904.1 (protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023551905.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.8 bits (974), Expect = 5.7e-102
Identity = 196/199 (98.49%), Postives = 197/199 (98.99%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MAMELSASRPISNLPLFSTVLAGNPQLRPRH+LPLRIAIVSRST SLHFRCRPFSVSLPR
Sbjct: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHSLPLRIAIVSRSTRSLHFRCRPFSVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF 120
           AAASDDSNGYRPFITEERDG IILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF
Sbjct: 61  AAASDDSNGYRPFITEERDGAIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF 120

Query: 121 ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180
           ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES
Sbjct: 121 ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180

Query: 181 RDELAAKIDELKDQVVGSD 200
           RDELAAKIDELKDQVVGSD
Sbjct: 181 RDELAAKIDELKDQVVGSD 199

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BLAST of Carg05839 vs. NCBI nr
Match: XP_022929179.1 (protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata] >XP_022929180.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata] >XP_022929181.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata] >XP_022929182.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata] >XP_022929183.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 375.6 bits (963), Expect = 1.1e-100
Identity = 195/199 (97.99%), Postives = 195/199 (97.99%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MAMELSASR ISNLPLFSTVLAGN QLRPRHALPLRIAIVSRST SLHFRCRPFSVSLPR
Sbjct: 1   MAMELSASRAISNLPLFSTVLAGNSQLRPRHALPLRIAIVSRSTRSLHFRCRPFSVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF 120
           AAASDDSNGYRPFITEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF
Sbjct: 61  AAASDDSNGYRPFITEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF 120

Query: 121 ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180
           ESVDVYNLILYGSGAF GLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES
Sbjct: 121 ESVDVYNLILYGSGAFWGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180

Query: 181 RDELAAKIDELKDQVVGSD 200
           RDELAAKIDELKDQVVGSD
Sbjct: 181 RDELAAKIDELKDQVVGSD 199

[Close]
BLAST of Carg05839 vs. NCBI nr
Match: XP_022984560.1 (protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 369.4 bits (947), Expect = 7.7e-99
Identity = 190/199 (95.48%), Postives = 193/199 (96.98%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MAMELSASR ISNLP+FSTVLAGNPQLRPRHALPLRIAI SRST SLHFRCRPF VSLPR
Sbjct: 1   MAMELSASRAISNLPVFSTVLAGNPQLRPRHALPLRIAIFSRSTRSLHFRCRPFFVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQF 120
           AAASDDSNGYRPFITEERDG IILEDSPAEKLPSDEMASSEEPVEGAQEQ FDLWNGLQF
Sbjct: 61  AAASDDSNGYRPFITEERDGAIILEDSPAEKLPSDEMASSEEPVEGAQEQTFDLWNGLQF 120

Query: 121 ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180
           ESVDVYNLILYG+GAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES
Sbjct: 121 ESVDVYNLILYGAGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180

Query: 181 RDELAAKIDELKDQVVGSD 200
           RDELAAK+DELKDQVVGSD
Sbjct: 181 RDELAAKVDELKDQVVGSD 199

[Close]
BLAST of Carg05839 vs. NCBI nr
Match: XP_011653358.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN53657.1 hypothetical protein Csa_4G097640 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 2.9e-61
Identity = 144/244 (59.02%), Postives = 167/244 (68.44%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MA++LSAS      PLFST+L GNP LRPR ALPLRIAI S  T SLH R R F+VSLPR
Sbjct: 1   MAIDLSASP-----PLFSTLLTGNPYLRPRPALPLRIAISSAFTTSLHSRHRHFAVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPA-----------EKLPSD-------------- 120
           AAASD+SNG   F TE+RD   +LEDSP+           E++PSD              
Sbjct: 61  AAASDESNGSSSFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSDVLAATEVPKQEPVE 120

Query: 121 ----------------EMASSEE----PVEGAQEQAFDLWNGLQFESVDVYNLILYGSGA 180
                           EM +SEE    P+EGAQEQAF+  N L+ ESVD Y+L LYG+GA
Sbjct: 121 DVPVITLDDSSSAGKVEMVTSEEPKEQPLEGAQEQAFEFLNDLKLESVDTYSLALYGAGA 180

Query: 181 FLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQV 200
           F G+WLVSAIVGA+DSIP+VPKLLEVVGLGY+VWFTARYLL KESRDELAA+IDELK+QV
Sbjct: 181 FFGIWLVSAIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAARIDELKEQV 239

[Close]
BLAST of Carg05839 vs. NCBI nr
Match: XP_008455610.1 (PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 6.0e-59
Identity = 141/236 (59.75%), Postives = 165/236 (69.92%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MA++LSAS      PLFST+L G P LRPR ALPLRIAI S  T SLH R R F+VSLPR
Sbjct: 1   MAIDLSASP-----PLFSTLLTGKPHLRPRPALPLRIAISSACTTSLHSRHRHFAVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPA-----------EKLPSDEMASSE----EPVE 120
           AAASD+S+   PF TE+RD   +LEDSP+           E++PSD +A++E    EPVE
Sbjct: 61  AAASDESS---PFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSDGIAATEVPKQEPVE 120

Query: 121 ----------------------GAQEQAFDLWNGLQFESVDVYNLILYGSGAFLGLWLVS 180
                                 GAQEQAF+  N L+ ESVD Y+L LYG+GAF G+WLVS
Sbjct: 121 DVPVVTLVEIAXXXXXXXXXXXGAQEQAFEFLNDLKLESVDTYSLALYGAGAFFGIWLVS 180

Query: 181 AIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD 200
           AIVGA+DSIP+VPKLLEVVGLGY+VWFTARYLL KESRDELAA+IDELK+QV GSD
Sbjct: 181 AIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAARIDELKEQVFGSD 228

[Close]
BLAST of Carg05839 vs. TAIR10
Match: AT4G38100.1 (unknown protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-28
Identity = 70/172 (40.70%), Postives = 106/172 (61.63%), Query Frame = 0 

Query: 30  RHALPLRIAIVSRSTGSLHFRCRPFSVSLPRAAASDD-SNGYRPFITEERDGPIILEDSP 89
           R +LPL+  + S    S   RC   S   P    +++ S G   F  E+RDG ++  +  
Sbjct: 31  RISLPLQRNVASLVLQSRTLRC---SRKFPGETVTEETSTGVNEFGVEDRDGVVVAAE-- 90

Query: 90  AEKLPSDEMASSEEP-VEGAQEQAFDLWNGLQFESVDVYNLILYGSGAFLGLWLVSAIVG 149
                 ++ ++SE P  E  + QA +  N ++ +S   Y+++LYGSGA + L+L SAIV 
Sbjct: 91  ------EKNSNSEAPQAEDEETQALEFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIVS 150

Query: 150 AIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD 200
           ++++IP+ PKL+EVVGLGYT+WFT RYLL K +R+EL  K+ E+K QV+GSD
Sbjct: 151 SLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 191

[Close]
BLAST of Carg05839 vs. TAIR10
Match: AT4G01150.1 (unknown protein)

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-19
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 0 

Query: 98  ASSEEPVE-GAQEQAFDL---WNGLQFESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIP 157
           ASSEE       E   DL   W+GL+ +S     +++YG GA + +WL S +VGAI+S+P
Sbjct: 63  ASSEETSSIDTNELITDLKEKWDGLENKS----TVLIYGGGAIVAVWLSSIVVGAINSVP 122

Query: 158 VVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD 200
           ++PK++E+VGLGYT WF  RYLL K SR ELA  I+ LK ++ GS+
Sbjct: 123 LLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

[Close]
BLAST of Carg05839 vs. TAIR10
Match: AT2G46820.1 (photosystem I P subunit)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = 0 

Query: 75  TEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQFESVDVYNLILYGSG 134
           TE  + P    ++   +LP        E V+ AQE          +E VD  +    GS 
Sbjct: 66  TEVGEAPATTTEAETTELP--------EIVKTAQE---------AWEKVD--DKYAIGSL 125

Query: 135 AFLG---LWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDEL 194
           AF G   LW  + ++ AID +P+VP +LE+VG+GYT WFT + L+ K  R+ L  K+   
Sbjct: 126 AFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKST 173

Query: 195 KDQVVGS 199
              ++GS
Sbjct: 186 YKDILGS 173

[Close]
BLAST of Carg05839 vs. TAIR10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-07
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 121 ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180
           +S D   LI  G    + LW    ++ AID +PV+    E+VG+ ++ WFT RYLL K  
Sbjct: 79  KSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPD 138

Query: 181 RDELAAKIDELKDQVVG 198
           R EL+  + +    ++G
Sbjct: 139 RQELSKIVKKSVADILG 155

[Close]
BLAST of Carg05839 vs. Swiss-Prot
Match: sp|Q8LDD3|CUT1D_ARATH (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 70/172 (40.70%), Postives = 106/172 (61.63%), Query Frame = 0 

Query: 30  RHALPLRIAIVSRSTGSLHFRCRPFSVSLPRAAASDD-SNGYRPFITEERDGPIILEDSP 89
           R +LPL+  + S    S   RC   S   P    +++ S G   F  E+RDG ++  +  
Sbjct: 31  RISLPLQRNVASLVLQSRTLRC---SRKFPGETVTEETSTGVNEFGVEDRDGVVVAAE-- 90

Query: 90  AEKLPSDEMASSEEP-VEGAQEQAFDLWNGLQFESVDVYNLILYGSGAFLGLWLVSAIVG 149
                 ++ ++SE P  E  + QA +  N ++ +S   Y+++LYGSGA + L+L SAIV 
Sbjct: 91  ------EKNSNSEAPQAEDEETQALEFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIVS 150

Query: 150 AIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD 200
           ++++IP+ PKL+EVVGLGYT+WFT RYLL K +R+EL  K+ E+K QV+GSD
Sbjct: 151 SLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 191

[Close]
BLAST of Carg05839 vs. Swiss-Prot
Match: sp|O04616|CUT1A_ARATH (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-18
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 0 

Query: 98  ASSEEPVE-GAQEQAFDL---WNGLQFESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIP 157
           ASSEE       E   DL   W+GL+ +S     +++YG GA + +WL S +VGAI+S+P
Sbjct: 63  ASSEETSSIDTNELITDLKEKWDGLENKS----TVLIYGGGAIVAVWLSSIVVGAINSVP 122

Query: 158 VVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD 200
           ++PK++E+VGLGYT WF  RYLL K SR ELA  I+ LK ++ GS+
Sbjct: 123 LLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

[Close]
BLAST of Carg05839 vs. Swiss-Prot
Match: sp|Q8LCA1|CUT1B_ARATH (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-07
Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = 0 

Query: 75  TEERDGPIILEDSPAEKLPSDEMASSEEPVEGAQEQAFDLWNGLQFESVDVYNLILYGSG 134
           TE  + P    ++   +LP        E V+ AQE          +E VD  +    GS 
Sbjct: 66  TEVGEAPATTTEAETTELP--------EIVKTAQE---------AWEKVD--DKYAIGSL 125

Query: 135 AFLG---LWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDEL 194
           AF G   LW  + ++ AID +P+VP +LE+VG+GYT WFT + L+ K  R+ L  K+   
Sbjct: 126 AFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKST 173

Query: 195 KDQVVGS 199
              ++GS
Sbjct: 186 YKDILGS 173

[Close]
BLAST of Carg05839 vs. Swiss-Prot
Match: sp|Q9M812|CUT1C_ARATH (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.2e-06
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 121 ESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKES 180
           +S D   LI  G    + LW    ++ AID +PV+    E+VG+ ++ WFT RYLL K  
Sbjct: 79  KSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPD 138

Query: 181 RDELAAKIDELKDQVVG 198
           R EL+  + +    ++G
Sbjct: 139 RQELSKIVKKSVADILG 155

[Close]
BLAST of Carg05839 vs. Swiss-Prot
Match: sp|Q119Z5|SYE_TRIEI (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.9e-06
Identity = 21/56 (37.50%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 142 VSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVG 198
           ++ ++ A+D IP++  + E++G+ Y VWF  RYLL + +R EL  KI+ +K ++ G
Sbjct: 823 MAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENIKREIFG 878

[Close]
BLAST of Carg05839 vs. TrEMBL
Match: tr|A0A0A0KZ51|A0A0A0KZ51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097640 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.9e-61
Identity = 144/244 (59.02%), Postives = 167/244 (68.44%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MA++LSAS      PLFST+L GNP LRPR ALPLRIAI S  T SLH R R F+VSLPR
Sbjct: 1   MAIDLSASP-----PLFSTLLTGNPYLRPRPALPLRIAISSAFTTSLHSRHRHFAVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPA-----------EKLPSD-------------- 120
           AAASD+SNG   F TE+RD   +LEDSP+           E++PSD              
Sbjct: 61  AAASDESNGSSSFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSDVLAATEVPKQEPVE 120

Query: 121 ----------------EMASSEE----PVEGAQEQAFDLWNGLQFESVDVYNLILYGSGA 180
                           EM +SEE    P+EGAQEQAF+  N L+ ESVD Y+L LYG+GA
Sbjct: 121 DVPVITLDDSSSAGKVEMVTSEEPKEQPLEGAQEQAFEFLNDLKLESVDTYSLALYGAGA 180

Query: 181 FLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQV 200
           F G+WLVSAIVGA+DSIP+VPKLLEVVGLGY+VWFTARYLL KESRDELAA+IDELK+QV
Sbjct: 181 FFGIWLVSAIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAARIDELKEQV 239

[Close]
BLAST of Carg05839 vs. TrEMBL
Match: tr|A0A1S3C1G0|A0A1S3C1G0_CUCME (protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495742 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.0e-59
Identity = 141/236 (59.75%), Postives = 165/236 (69.92%), Query Frame = 0 

Query: 1   MAMELSASRPISNLPLFSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPR 60
           MA++LSAS      PLFST+L G P LRPR ALPLRIAI S  T SLH R R F+VSLPR
Sbjct: 1   MAIDLSASP-----PLFSTLLTGKPHLRPRPALPLRIAISSACTTSLHSRHRHFAVSLPR 60

Query: 61  AAASDDSNGYRPFITEERDGPIILEDSPA-----------EKLPSDEMASSE----EPVE 120
           AAASD+S+   PF TE+RD   +LEDSP+           E++PSD +A++E    EPVE
Sbjct: 61  AAASDESS---PFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSDGIAATEVPKQEPVE 120

Query: 121 ----------------------GAQEQAFDLWNGLQFESVDVYNLILYGSGAFLGLWLVS 180
                                 GAQEQAF+  N L+ ESVD Y+L LYG+GAF G+WLVS
Sbjct: 121 DVPVVTLVEIAXXXXXXXXXXXGAQEQAFEFLNDLKLESVDTYSLALYGAGAFFGIWLVS 180

Query: 181 AIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQVVGSD 200
           AIVGA+DSIP+VPKLLEVVGLGY+VWFTARYLL KESRDELAA+IDELK+QV GSD
Sbjct: 181 AIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAARIDELKEQVFGSD 228

[Close]
BLAST of Carg05839 vs. TrEMBL
Match: tr|A0A1S3C1A4|A0A1S3C1A4_CUCME (protein CURVATURE THYLAKOID 1D, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495742 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 109/185 (58.92%), Postives = 130/185 (70.27%), Query Frame = 0 

Query: 52  RPFSVSLPRAAASDDSNGYRPFITEERDGPIILEDSPA-----------EKLPSDEMASS 111
           R F+VSLPRAAASD+S+   PF TE+RD   +LEDSP+           E++PSD +A++
Sbjct: 16  RHFAVSLPRAAASDESS---PFFTEQRDSVTVLEDSPSASSLTLEDSPPEEIPSDGIAAT 75

Query: 112 E----EPVE----------------------GAQEQAFDLWNGLQFESVDVYNLILYGSG 171
           E    EPVE                      GAQEQAF+  N L+ ESVD Y+L LYG+G
Sbjct: 76  EVPKQEPVEDVPVVTLVEIAXXXXXXXXXXXGAQEQAFEFLNDLKLESVDTYSLALYGAG 135

Query: 172 AFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDELKDQ 200
           AF G+WLVSAIVGA+DSIP+VPKLLEVVGLGY+VWFTARYLL KESRDELAA+IDELK+Q
Sbjct: 136 AFFGIWLVSAIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFKESRDELAARIDELKEQ 195

[Close]
BLAST of Carg05839 vs. TrEMBL
Match: tr|A0A2C9UVZ2|A0A2C9UVZ2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G127700 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 96/203 (47.29%), Postives = 134/203 (66.01%), Query Frame = 0 

Query: 3   MELSASRPISNLPLFSTVLAGNPQL-RPRHALPLRIAIVSRSTGSLHFRCRPFS--VSLP 62
           MEL  ++ +SNLP    +    P L   + AL L+ A +  S+G    RC P S  +S+P
Sbjct: 1   MELCTAQSLSNLP---KIFTSRPILILSKTALNLQQAHIP-SSGR---RCSPHSRFLSVP 60

Query: 63  RAAASDD-SNGYRPFITEERDGPIILE-DSPAEKLPSDEMASSEEPVEGA--QEQAFDLW 122
           R+   ++ S+G   ++TEERD  + +E D P+EK   +E + +E P++ +   EQ  D W
Sbjct: 61  RSITPEESSSGASLYVTEERDNEVTVEVDPPSEKKVYNESSETEAPLDDSPVDEQLSDFW 120

Query: 123 NGLQFESVDVYNLILYGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYL 182
             L+FE  D Y+++LYG G  + LWL SA+V AIDSIP+ PKLLEVVGLGY++WFT RYL
Sbjct: 121 ANLKFE--DTYSILLYGGGTLVALWLASAVVSAIDSIPLFPKLLEVVGLGYSIWFTTRYL 180

Query: 183 LLKESRDELAAKIDELKDQVVGS 199
           L K+SRDELAAK++ELK QV+GS
Sbjct: 181 LFKKSRDELAAKVEELKQQVLGS 194

[Close]
BLAST of Carg05839 vs. TrEMBL
Match: tr|A0A067FAW5|A0A067FAW5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028427mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-33
Identity = 86/189 (45.50%), Postives = 120/189 (63.49%), Query Frame = 0 

Query: 17  FSTVLAGNPQLRPRHALPLRIAIVSRSTGSLHFRCRPFSVSLPRAAASDDSNGYRPFITE 76
           F T        R + AL L+   VSRS   L  R   ++  LP+A + + S+G   ++ +
Sbjct: 20  FLTATTAPALARTKSALSLKQTTVSRSGYGLRSRILYYTNPLPKATSEETSSGTDQYVVD 79

Query: 77  ERDGPIILEDSPA-EKLPSDEMASS-----EEPVEGAQEQAFDLWNGLQFESVDVYNLIL 136
           +RDG    ED PA EK   +E  ++     E PV+G   +  D    ++F+S D Y+L+L
Sbjct: 80  KRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLK-IKFDSEDKYSLVL 139

Query: 137 YGSGAFLGLWLVSAIVGAIDSIPVVPKLLEVVGLGYTVWFTARYLLLKESRDELAAKIDE 196
           YG+GA L LWL + +VGAIDSIP+ PKL+EVVGLGYT+WF+ RYLL K++RDELA KI+E
Sbjct: 140 YGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEE 199

Query: 197 LKDQVVGSD 200
           LK QV+GS+
Sbjct: 200 LKQQVLGSN 207

The following BLAST results are available for this feature:
BLAST of Carg05839 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023551904.15.7e-10298.49protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita pepo subsp. pepo] ... [more]
XP_022929179.11.1e-10097.99protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata] >XP_0229... [more]
XP_022984560.17.7e-9995.48protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita maxima][more]
XP_011653358.12.9e-6159.02PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN5... [more]
XP_008455610.16.0e-5959.75PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Cucumis mel... [more]
BLAST of Carg05839 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38100.13.9e-2840.70unknown protein[more]
AT4G01150.14.3e-1948.11unknown protein[more]
AT2G46820.11.5e-0833.86photosystem I P subunit[more]
AT1G52220.12.9e-0735.06FUNCTIONS IN: molecular_function unknown[more]
BLAST of Carg05839 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LDD3|CUT1D_ARATH7.0e-2740.70Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|O04616|CUT1A_ARATH7.8e-1848.11Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q8LCA1|CUT1B_ARATH2.8e-0733.86Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q9M812|CUT1C_ARATH5.2e-0635.06Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q119Z5|SYE_TRIEI8.9e-0637.50Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=... [more]
BLAST of Carg05839 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZ51|A0A0A0KZ51_CUCSA1.9e-6159.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097640 PE=4 SV=1[more]
tr|A0A1S3C1G0|A0A1S3C1G0_CUCME4.0e-5959.75protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 OS=Cucumis melo OX=3656... [more]
tr|A0A1S3C1A4|A0A1S3C1A4_CUCME1.6e-4458.92protein CURVATURE THYLAKOID 1D, chloroplastic isoform X2 OS=Cucumis melo OX=3656... [more]
tr|A0A2C9UVZ2|A0A2C9UVZ2_MANES2.0e-3447.29Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G127700 PE=4 SV=... [more]
tr|A0A067FAW5|A0A067FAW5_CITSI8.3e-3345.50Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028427mg PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
Vocabulary: INTERPRO
TermDefinition
IPR033344CURT1
IPR025564CAAD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009579 thylakoid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05839-RACarg05839-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 174..194
NoneNo IPR availablePANTHERPTHR33222:SF2PROTEIN CURVATURE THYLAKOID 1D, CHLOROPLASTICcoord: 29..199
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 126..197
e-value: 1.4E-24
score: 85.7
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 29..199