Carg05075 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05075
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome b561 and DOMON domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_060 : 1216324 .. 1216515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAGCCCAGGCCCTCATCACCACCCTCTCCGTCCATACCTTCGGCATTTCCTCCTACTCTTCCGTCCGCCCCTCACCGCTCTCCTTCCCCATCTGGGACATCGCCGCTGAATTCGCTGACGAACGGCTCACAATCTTCGCTACTGTGGAAGTTCCAGCCAAGCCTAAGTCGCTGAACCAGGTCTAG

mRNA sequence

ATGTCTGGAGCCCAGGCCCTCATCACCACCCTCTCCGTCCATACCTTCGGCATTTCCTCCTACTCTTCCGTCCGCCCCTCACCGCTCTCCTTCCCCATCTGGGACATCGCCGCTGAATTCGCTGACGAACGGCTCACAATCTTCGCTACTGTGGAAGTTCCAGCCAAGCCTAAGTCGCTGAACCAGGTCTAG

Coding sequence (CDS)

ATGTCTGGAGCCCAGGCCCTCATCACCACCCTCTCCGTCCATACCTTCGGCATTTCCTCCTACTCTTCCGTCCGCCCCTCACCGCTCTCCTTCCCCATCTGGGACATCGCCGCTGAATTCGCTGACGAACGGCTCACAATCTTCGCTACTGTGGAAGTTCCAGCCAAGCCTAAGTCGCTGAACCAGGTCTAG

Protein sequence

MSGAQALITTLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPAKPKSLNQV

Homology

[Close]

BLAST of Carg05075 vs. NCBI nr
Match: XP_023004353.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPA 60
           MSG+QALI TLS     V TF ++SYSSVRP+PLSFP+WDIAAEFAD+R+TIFATVEVPA
Sbjct: 87  MSGSQALIATLSADTPTVRTFDVASYSSVRPAPLSFPVWDIAAEFADKRITIFATVEVPA 146

Query: 61  KPKSLNQV 64
           K KS+N V
Sbjct: 147 KAKSVNHV 154

[Close]

BLAST of Carg05075 vs. NCBI nr
Match: XP_022959842.1 (auxin-induced in root cultures protein 12-like [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPA 60
           M+G+QALI TLS     V TF + SYSS+RP+PLSFP+WD+AAEFAD+R+TIFATVEVPA
Sbjct: 88  MAGSQALIATLSGDTPTVRTFDVVSYSSLRPAPLSFPVWDVAAEFADKRITIFATVEVPA 147

Query: 61  KPKSLNQV 64
           K KS+N V
Sbjct: 148 KAKSVNHV 155

[Close]

BLAST of Carg05075 vs. NCBI nr
Match: XP_023514479.1 (auxin-induced in root cultures protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 9.8e-16
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVPA 60
           MSG+QALI TLS     V TF + SYSSVRP+PLSFP+W++AAEFAD+R+TIFATVEVPA
Sbjct: 88  MSGSQALIATLSGDTPTVRTFDVVSYSSVRPAPLSFPVWNVAAEFADKRITIFATVEVPA 147

Query: 61  KPKSLNQV 64
           K  S+N V
Sbjct: 148 KAMSVNHV 155

[Close]

BLAST of Carg05075 vs. NCBI nr
Match: XP_022991982.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   MSGAQALITTLS-----VHTFGISSYSSVRPSP-LSFPIWDIAAEFADERLTIFATVEVP 60
           M+GAQAL+ ++S     V TF ISSYSSV PSP LSF +W +AAEF+D R TIFATV+VP
Sbjct: 86  MAGAQALVASVSGKSPTVRTFNISSYSSVVPSPKLSFLVWGLAAEFSDGRFTIFATVKVP 145

Query: 61  AKPKSLNQV 64
            K KSLNQV
Sbjct: 146 PKTKSLNQV 154

[Close]

BLAST of Carg05075 vs. NCBI nr
Match: XP_022988993.1 (auxin-induced in root cultures protein 12-like [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MSGAQALIT-----TLSVHTFGISSYSSVRPS-PLSFPIWDIAAEFADERLTIFATVEVP 60
           M GAQALI      T SV TF ISSYS V PS  LSFP+WD+AAE +DE+ TIFATV+VP
Sbjct: 86  MIGAQALIASQSGGTPSVRTFNISSYSVVLPSHSLSFPVWDVAAECSDEQFTIFATVKVP 145

Query: 61  AKPKSLNQV 64
            K KSLNQV
Sbjct: 146 EKAKSLNQV 154

[Close]

BLAST of Carg05075 vs. TAIR10
Match: AT3G07390.1 (auxin-responsive family protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-06
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1   MSGAQALITTLS-------VHTFGISSYSSVRPSPLSFPIWDIAAE-FADERLTIFATVE 60
           M+G+QA +   S       V T+ ISSYSS+    L+F  W++ AE  +  R+ IF TV+
Sbjct: 112 MAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVK 171

Query: 61  VPAKPKSLNQV 64
           VPA   S+NQV
Sbjct: 172 VPAGADSVNQV 182

[Close]

BLAST of Carg05075 vs. TAIR10
Match: AT4G12980.1 (Auxin-responsive family protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.9e-06
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1   MSGAQALITT-------LSVHTFGISSYSSVRPSPLSFPIWDIAAEFADE---RLTIFAT 56
           M+G+QAL+ +        SV T  I SYSS+ PS LSF +WD+ AE A      L IFA 
Sbjct: 90  MAGSQALVASKDPSTGVASVTTLNIVSYSSLVPSKLSFDVWDVKAEEAANDGGALRIFAK 149

[Close]

BLAST of Carg05075 vs. TAIR10
Match: AT3G25290.1 (Auxin-responsive family protein)

HSP 1 Score: 42.7 bits (99), Expect = 9.5e-05
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 1   MSGAQALIT-------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADE---RLTIFAT 56
           M G+Q L+           V T  ISSYSS+ PS L+F +WD+ AE A      L IFA 
Sbjct: 89  MVGSQTLVAYKDPGNGVAVVKTLNISSYSSLIPSKLAFDVWDMKAEEAARDGGSLRIFAR 148

[Close]

BLAST of Carg05075 vs. Swiss-Prot
Match: sp|Q94BT2|AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana OX=3702 GN=AIR12 PE=1 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 5.3e-05
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1   MSGAQALITTLS-------VHTFGISSYSSVRPSPLSFPIWDIAAE-FADERLTIFATVE 60
           M+G+QA +   S       V T+ ISSYSS+    L+F  W++ AE  +  R+ IF TV+
Sbjct: 91  MAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVK 150

Query: 61  VPAKPKSLNQV 64
           VPA   S+NQV
Sbjct: 151 VPAGADSVNQV 161

[Close]

BLAST of Carg05075 vs. Swiss-Prot
Match: sp|Q9SV71|B561O_ARATH (Cytochrome b561 and DOMON domain-containing protein At4g12980 OS=Arabidopsis thaliana OX=3702 GN=At4g12980 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-05
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1   MSGAQALITT-------LSVHTFGISSYSSVRPSPLSFPIWDIAAEFADE---RLTIFAT 56
           M+G+QAL+ +        SV T  I SYSS+ PS LSF +WD+ AE A      L IFA 
Sbjct: 90  MAGSQALVASKDPSTGVASVTTLNIVSYSSLVPSKLSFDVWDVKAEEAANDGGALRIFAK 149

[Close]

BLAST of Carg05075 vs. TrEMBL
Match: tr|A0A1S4E1W3|A0A1S4E1W3_CUCME (auxin-induced in root cultures protein 12 OS=Cucumis melo OX=3656 GN=LOC107991583 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.1e-10
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MSGAQALIT-----TLSVHTFGISSYSSVRPSP-LSFPIWDIAAEFADERLTIFATVEVP 60
           M+G+QA +      +L+V TF I+SY+SVRPSP LSFP WD+A+E +D+   IF TV+VP
Sbjct: 86  MAGSQAFLAAFFAKSLTVRTFNITSYNSVRPSPTLSFPFWDLASESSDDLFAIFVTVKVP 145

Query: 61  AKPKSLNQV 64
            K  SLNQV
Sbjct: 146 EKASSLNQV 154

[Close]

BLAST of Carg05075 vs. TrEMBL
Match: tr|A0A0A0K5A4|A0A0A0K5A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368155 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MSGAQALIT-----TLSVHTFGISSYSSVRPSP-LSFPIWDIAAEFADERLTIFATVEVP 60
           M+G+QA +      +L+V TF I+SY+SVRPSP LSFP WD+A++ +D+   IF TV+VP
Sbjct: 86  MAGSQAFLAAFFTKSLTVRTFNITSYNSVRPSPTLSFPFWDLASQSSDDLFAIFVTVKVP 145

Query: 61  AKPKSLNQV 64
            K  SLNQV
Sbjct: 146 EKSSSLNQV 154

[Close]

BLAST of Carg05075 vs. TrEMBL
Match: tr|A0A2P5B2Q5|A0A2P5B2Q5_9ROSA (DOMON domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_334320 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MSGAQALIT------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVP 60
           M G+QAL+       +++V T+ ISSY++V PS +SF +WD++A +A  ++TIFATV+VP
Sbjct: 89  MIGSQALVAVRRSNGSVTVQTYNISSYAAVVPSSISFEVWDLSATYAGGQITIFATVKVP 148

Query: 61  AKPKSLNQV 64
            K +SLNQV
Sbjct: 149 EKAESLNQV 157

[Close]

BLAST of Carg05075 vs. TrEMBL
Match: tr|M5VKB3|M5VKB3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G192700 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   MSGAQALIT------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVP 60
           M+GAQ L+         +V+T  ISSYSS+ P  LSF +WD++AEF+++  TIFATV+VP
Sbjct: 92  MAGAQTLLAYKTENGAPAVNTLNISSYSSIVPGKLSFEVWDVSAEFSNDTFTIFATVKVP 151

Query: 61  AKPKSLNQV 64
               S+NQV
Sbjct: 152 KDAASVNQV 160

[Close]

BLAST of Carg05075 vs. TrEMBL
Match: tr|M5VVB4|M5VVB4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023151mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   MSGAQALIT------TLSVHTFGISSYSSVRPSPLSFPIWDIAAEFADERLTIFATVEVP 60
           M+GAQ L+         +V TF ISSY+SV P  LSF IWDI++EF++    IFA V+VP
Sbjct: 91  MAGAQILLAYNTDGGIPTVKTFNISSYTSVVPGKLSFDIWDISSEFSNGTFKIFAAVKVP 150

Query: 61  AKPKSLNQV 64
              KS+NQV
Sbjct: 151 KNKKSVNQV 159

The following BLAST results are available for this feature:

BLAST of Carg05075 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004353.1	1.8e-17	73.53	auxin-induced in root cultures protein 12-like [Cucurbita maxima]	[more]
XP_022959842.1	2.6e-16	69.12	auxin-induced in root cultures protein 12-like [Cucurbita moschata]	[more]
XP_023514479.1	9.8e-16	69.12	auxin-induced in root cultures protein 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991982.1	6.6e-12	65.22	auxin-induced in root cultures protein 12-like [Cucurbita maxima]	[more]
XP_022988993.1	1.1e-11	66.67	auxin-induced in root cultures protein 12-like [Cucurbita maxima]	[more]

BLAST of Carg05075 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07390.1	3.0e-06	42.25	auxin-responsive family protein	[more]
AT4G12980.1	3.9e-06	47.69	Auxin-responsive family protein	[more]
AT3G25290.1	9.5e-05	44.62	Auxin-responsive family protein	[more]

BLAST of Carg05075 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94BT2\|AIR12_ARATH	5.3e-05	42.25	Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana OX=3702 GN=AIR...	[more]
sp\|Q9SV71\|B561O_ARATH	7.0e-05	47.69	Cytochrome b561 and DOMON domain-containing protein At4g12980 OS=Arabidopsis tha...	[more]

BLAST of Carg05075 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E1W3\|A0A1S4E1W3_CUCME	9.1e-10	55.07	auxin-induced in root cultures protein 12 OS=Cucumis melo OX=3656 GN=LOC10799158...	[more]
tr\|A0A0A0K5A4\|A0A0A0K5A4_CUCSA	2.0e-09	53.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368155 PE=4 SV=1	[more]
tr\|A0A2P5B2Q5\|A0A2P5B2Q5_9ROSA	1.3e-08	49.28	DOMON domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_33432...	[more]
tr\|M5VKB3\|M5VKB3_PRUPE	5.0e-08	49.28	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G192700 PE=4 SV=1	[more]
tr\|M5VVB4\|M5VVB4_PRUPE	5.5e-07	50.72	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023151m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005018	DOMON_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05075-RA	Carg05075-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005018	DOMON domain	PFAM	PF04526	DUF568	coord: 1..63 e-value: 1.3E-9 score: 38.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05075	MELO3C021119	Melon (DHL92) v3.5.1	carmeB0083
Carg05075	CSPI07G14880	Wild cucumber (PI 183967)	carcpiB0099
Carg05075	Cucsa.387840	Cucumber (Gy14) v1	carcgyB0104
Carg05075	CmaCh17G012980	Cucurbita maxima (Rimu)	carcmaB0104
Carg05075	CmaCh08G002530	Cucurbita maxima (Rimu)	carcmaB0112
Carg05075	CmoCh17G012720	Cucurbita moschata (Rifu)	carcmoB0112
Carg05075	CmoCh08G002510	Cucurbita moschata (Rifu)	carcmoB0119
Carg05075	Lsi02G021420	Bottle gourd (USVL1VR-Ls)	carlsiB074
Carg05075	Cp4.1LG12g10760	Cucurbita pepo (Zucchini)	carcpeB0116
Carg05075	CsGy7G013410	Cucumber (Gy14) v2	carcgybB0095
Carg05075	MELO3C021119.2	Melon (DHL92) v3.6.1	carmedB0084
Carg05075	CsaV3_7G026670	Cucumber (Chinese Long) v3	carcucB0102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05075	Wax gourd	carwgoB0098
Carg05075	Silver-seed gourd	carcarB009
Carg05075	Cucurbita pepo (Zucchini)	carcpeB0123
Carg05075	Cucurbita pepo (Zucchini)	carcpeB0125
Carg05075	Cucumber (Chinese Long) v2	carcuB0095
Carg05075	Watermelon (Charleston Gray)	carwcgB0080
Carg05075	Watermelon (97103) v1	carwmB0079
Carg05075	Watermelon (97103) v2	carwmbB0085