Carg05008 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05008
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ciliary neurotrophic factor
Location	Cucurbita_argyrosperma_scaffold_060 : 789411 .. 790655 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAGAAATTTCTAGTGGAACAGTCCGATGGAAAAAGAGCAACGCCTCGAGCTGATCAAACTCGCCATTGAGAGGCTGCTTGATGAGAACAAGAACAAGCAATCCTCTGATCGAAGCTACATCCACGATTGCGATGAAAACGGGGACCGTACTCTTCTCCACGATTTGCTCTCTCAGGTACGCAAGATTTACGGTTTTGATTTCCGAAACACAAACTTCGAAATTCTTATGGCTACGCCTTTTGTAATTTATTCTTCGAAATCGATGTTTGATTGAGGTTTTTGAGTTGTTGCTTCGTATTTCTTTGATTTCTTCTTCGTATGTTTCGATTGTGAGTTTCTGGAATTTCTTTCATTACGCACTGTTAGGAAATCTCAATTTATGGAGGAAAATTGAATTCGAATCTGGAGTGTTGTTGTTAAATCATTTGAAATCCACCTAGATTTGGCCTTCTGAACTTGCTCATGATCATATCACCCTTCCAAATCCTGTCTCTGCTTCTTTGGATAGTAAATTTGTAAACCAAATTCATTTTCCTCAACACCAACAGATAGAATCGCTGAAAGAAGGAACGGAATCAGAGGAGTTGGCTTCTGCATTAGATAATTTGAAATCGAAAGCTAAGAACTCTGATGATGATGATGATGATGAGTTTAGTAGAGAAGACATTGTTAAGGAACTGAAGAAGGTGAAAAGGCAAAACGTTTTAACTCAGTGTCTTGTCTCAGTGATGATAGTGGTGACTGTTGTTTGGCAGCTTTCTGAGGTCTCCATTATGTTGAATGTAAAAGATCAAATCAGCCATCCCTTTAGATTCCTGGGCAGTTTGATCTCAGGAGCGCTCAAACGCCCAAAAACCATTGTTGAGAATTCACCAAAACAAGAACATGATGAAGCTTCTATGCTTCCCACTCTCCAAATCCCAGAACTTCCTCATATGGGTTTGCAGTAATTTTGGATTTGATGATGGAAAACATTGGTTGTTCTTGAGCTACAAAGGGAGATGGGGGTTAGACAACAATTTTTCAAACGGTGCTGATGAAGAAACATGGAGAGATTTGCTTGGAGGAATCCCCAGATTACGTAATTGTTATATTTGTTTGGTTTTGTGAAAATTTGCTTTGTAATTTAGGGGTCGGATTATCTTTTGAGGAAAAAAAAAAAATCAAAATTAAAGTGAAAGAACCGTTTTTTCTCCTCCTAATTTAGTTTTCATAATTGGTAGCTTTTACATTAGAAACTATT

mRNA sequence

CATAGAAATTTCTAGTGGAACAGTCCGATGGAAAAAGAGCAACGCCTCGAGCTGATCAAACTCGCCATTGAGAGGCTGCTTGATGAGAACAAGAACAAGCAATCCTCTGATCGAAGCTACATCCACGATTGCGATGAAAACGGGGACCGTACTCTTCTCCACGATTTGCTCTCTCAGATAGAATCGCTGAAAGAAGGAACGGAATCAGAGGAGTTGGCTTCTGCATTAGATAATTTGAAATCGAAAGCTAAGAACTCTGATGATGATGATGATGATGAGTTTAGTAGAGAAGACATTGTTAAGGAACTGAAGAAGGTGAAAAGGCAAAACGTTTTAACTCAGTGTCTTGTCTCAGTGATGATAGTGGTGACTGTTGTTTGGCAGCTTTCTGAGGTCTCCATTATGTTGAATGTAAAAGATCAAATCAGCCATCCCTTTAGATTCCTGGGCAGTTTGATCTCAGGAGCGCTCAAACGCCCAAAAACCATTGTTGAGAATTCACCAAAACAAGAACATGATGAAGCTTCTATGCTTCCCACTCTCCAAATCCCAGAACTTCCTCATATGGGTTTGCAGTAATTTTGGATTTGATGATGGAAAACATTGGTTGTTCTTGAGCTACAAAGGGAGATGGGGGTTAGACAACAATTTTTCAAACGGTGCTGATGAAGAAACATGGAGAGATTTGCTTGGAGGAATCCCCAGATTACGTAATTGTTATATTTGTTTGGTTTTGTGAAAATTTGCTTTGTAATTTAGGGGTCGGATTATCTTTTGAGGAAAAAAAAAAAATCAAAATTAAAGTGAAAGAACCGTTTTTTCTCCTCCTAATTTAGTTTTCATAATTGGTAGCTTTTACATTAGAAACTATT

Coding sequence (CDS)

ATGGAAAAAGAGCAACGCCTCGAGCTGATCAAACTCGCCATTGAGAGGCTGCTTGATGAGAACAAGAACAAGCAATCCTCTGATCGAAGCTACATCCACGATTGCGATGAAAACGGGGACCGTACTCTTCTCCACGATTTGCTCTCTCAGATAGAATCGCTGAAAGAAGGAACGGAATCAGAGGAGTTGGCTTCTGCATTAGATAATTTGAAATCGAAAGCTAAGAACTCTGATGATGATGATGATGATGAGTTTAGTAGAGAAGACATTGTTAAGGAACTGAAGAAGGTGAAAAGGCAAAACGTTTTAACTCAGTGTCTTGTCTCAGTGATGATAGTGGTGACTGTTGTTTGGCAGCTTTCTGAGGTCTCCATTATGTTGAATGTAAAAGATCAAATCAGCCATCCCTTTAGATTCCTGGGCAGTTTGATCTCAGGAGCGCTCAAACGCCCAAAAACCATTGTTGAGAATTCACCAAAACAAGAACATGATGAAGCTTCTATGCTTCCCACTCTCCAAATCCCAGAACTTCCTCATATGGGTTTGCAGTAA

Protein sequence

MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESEELASALDNLKSKAKNSDDDDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPELPHMGLQ

Homology

[Close]

BLAST of Carg05008 vs. NCBI nr
Match: XP_023522745.1 (uncharacterized protein LOC111786748 [Cucurbita pepo subsp. pepo] >XP_023513706.1 uncharacterized protein LOC111778234 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 1.8e-78
Identity = 169/187 (90.37%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL----KE 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL    KE
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKERTKE 60

Query: 61  GTESEELASALDNLKSKAXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120
           GTESE+LASALDNLKSKA          FSREDIVKELKKVKRQNVLTQCLVSVMIVVTV
Sbjct: 61  GTESEKLASALDNLKSKA---KNSDDDEFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120

Query: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180
           VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENS KQEHDEASMLP LQIPE
Sbjct: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSSKQEHDEASMLPPLQIPE 180

Query: 181 LPHMGLQ 184
           L HMGLQ
Sbjct: 181 LHHMGLQ 184

[Close]

BLAST of Carg05008 vs. NCBI nr
Match: XP_022959912.1 (uncharacterized protein LOC111460826 [Cucurbita moschata] >XP_022959913.1 uncharacterized protein LOC111460826 [Cucurbita moschata] >XP_022959914.1 uncharacterized protein LOC111460826 [Cucurbita moschata])

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 155/187 (82.89%), Postives = 155/187 (82.89%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLH----DLLSQIESLKE 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDE GDRTLLH               
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDETGDRTLLHXXXXXXXXXXXXXXX 60

Query: 61  GTESEELASALDNLKSKAXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120
                     LDNL    XXXXXXXXXX  REDIVKELKKVKRQNVLTQCLVSVMIVVTV
Sbjct: 61  XXXXXXXXXXLDNLXXXXXXXXXXXXXXXXREDIVKELKKVKRQNVLTQCLVSVMIVVTV 120

Query: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180
           VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE
Sbjct: 121 VWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPTLQIPE 180

Query: 181 LPHMGLQ 184
           LPHMGLQ
Sbjct: 181 LPHMGLQ 187

[Close]

BLAST of Carg05008 vs. NCBI nr
Match: XP_008459843.1 (PREDICTED: uncharacterized protein LOC103498843 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 3.0e-57
Identity = 129/189 (68.25%), Postives = 154/189 (81.48%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           ME+EQRLELI  AI+RLL++NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTES
Sbjct: 1   MEEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES 60

Query: 61  EELASALDNLKSK--AXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVW 120
           +E  SALD LK+K  +           SREDIVKELKK+KRQN+LT CL+SVMIV+T+VW
Sbjct: 61  DEFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVW 120

Query: 121 QLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVE----NSPKQEHDEASMLPTLQI 180
           QLSEVSI+LNVKD+ISHPFR LG+ ISG  KRPKTIV+    NS +Q++DE S+LP L+I
Sbjct: 121 QLSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKI 180

Query: 181 PELPHMGLQ 184
           PELPHMGLQ
Sbjct: 181 PELPHMGLQ 189

[Close]

BLAST of Carg05008 vs. NCBI nr
Match: XP_004140639.1 (PREDICTED: uncharacterized protein LOC101222559 isoform X2 [Cucumis sativus] >KGN46465.1 hypothetical protein Csa_6G095320 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 6.3e-55
Identity = 127/188 (67.55%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 2   EKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESE 61
           E+EQRLELI  AI RLL +NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTESE
Sbjct: 3   EEEQRLELISHAIRRLLVDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62

Query: 62  ELASALDNLKSK--AXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQ 121
           EL SALD LK+K  +           SRED+VKELKK+KRQN+LT CL+SVMIV+TVVWQ
Sbjct: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122

Query: 122 LSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVEN----SPKQEHDEASMLPTLQIP 181
           LSEVSI+LNVKD+ISHPFR LG+ ISG  +RPKTIV+N    S KQ+HDE S+LP L+I 
Sbjct: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182

Query: 182 ELPHMGLQ 184
           +LP +GLQ
Sbjct: 183 DLPQVGLQ 190

[Close]

BLAST of Carg05008 vs. NCBI nr
Match: XP_023004225.1 (uncharacterized protein LOC111497620 [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 2.2e-52
Identity = 138/202 (68.32%), Postives = 141/202 (69.80%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLH--------------- 60
           MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLH               
Sbjct: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHXXXXXXXXXXXXXXX 60

Query: 61  ----DLLSQIESLKEGTESEELASALDNLKSKAXXXXXXXXXXFSREDIVKELKKVKRQN 120
                                            XXXXXXXXXX            VKRQN
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKRQN 120

Query: 121 VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQ 180
           VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTI+ENSPKQ
Sbjct: 121 VLTQCLVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIIENSPKQ 180

Query: 181 EHDEASMLPTLQIPELPHMGLQ 184
           EHDEASMLP LQIPELPH+GL+
Sbjct: 181 EHDEASMLPPLQIPELPHVGLR 202

[Close]

BLAST of Carg05008 vs. TAIR10
Match: AT1G27300.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-08
Identity = 63/193 (32.64%), Postives = 92/193 (47.67%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESL----KE 60
           ME  + +E +  AIE+LL E + +++S  ++I D D   D+  L  L+SQ+ES     KE
Sbjct: 1   MESSEDVENLSRAIEKLLHEKRKREASGDAFIEDAD---DQLFLSSLISQLESPNPKGKE 60

Query: 61  GT---ESEELASALDNLKSKAXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIV 120
                E EE            XXXXXXXXXX                           I+
Sbjct: 61  DVITGEEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATII 120

Query: 121 VTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVEN--------SPKQEHDE 178
           +T+VWQLSE S++  +KD+ISHP R +G +++G  K     ++N        + +  H  
Sbjct: 121 LTLVWQLSEYSMIFMLKDRISHPVRSIGGMLNGMFKGKLRPIKNQLAGTSNSNDQNNHGN 180

[Close]

BLAST of Carg05008 vs. TrEMBL
Match: tr|A0A1S3CAM6|A0A1S3CAM6_CUCME (uncharacterized protein LOC103498843 OS=Cucumis melo OX=3656 GN=LOC103498843 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.0e-57
Identity = 129/189 (68.25%), Postives = 154/189 (81.48%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           ME+EQRLELI  AI+RLL++NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTES
Sbjct: 1   MEEEQRLELISHAIKRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTES 60

Query: 61  EELASALDNLKSK--AXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVW 120
           +E  SALD LK+K  +           SREDIVKELKK+KRQN+LT CL+SVMIV+T+VW
Sbjct: 61  DEFTSALDTLKTKVESFIKEEIVDDECSREDIVKELKKLKRQNLLTHCLLSVMIVLTIVW 120

Query: 121 QLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVE----NSPKQEHDEASMLPTLQI 180
           QLSEVSI+LNVKD+ISHPFR LG+ ISG  KRPKTIV+    NS +Q++DE S+LP L+I
Sbjct: 121 QLSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVDNTDKNSSRQDNDEVSLLPPLKI 180

Query: 181 PELPHMGLQ 184
           PELPHMGLQ
Sbjct: 181 PELPHMGLQ 189

[Close]

BLAST of Carg05008 vs. TrEMBL
Match: tr|A0A0A0K9P4|A0A0A0K9P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095320 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.2e-55
Identity = 127/188 (67.55%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 2   EKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESE 61
           E+EQRLELI  AI RLL +NKNK+SSDRS + D DENG+ +LL DLLSQIESLKEGTESE
Sbjct: 3   EEEQRLELISHAIRRLLVDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESE 62

Query: 62  ELASALDNLKSK--AXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQ 121
           EL SALD LK+K  +           SRED+VKELKK+KRQN+LT CL+SVMIV+TVVWQ
Sbjct: 63  ELISALDTLKTKVESSIKEEIVDDECSREDVVKELKKLKRQNLLTHCLLSVMIVLTVVWQ 122

Query: 122 LSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVEN----SPKQEHDEASMLPTLQIP 181
           LSEVSI+LNVKD+ISHPFR LG+ ISG  +RPKTIV+N    S KQ+HDE S+LP L+I 
Sbjct: 123 LSEVSIILNVKDKISHPFRSLGNFISGMFRRPKTIVDNTDKISSKQDHDEVSLLPPLKIS 182

Query: 182 ELPHMGLQ 184
           +LP +GLQ
Sbjct: 183 DLPQVGLQ 190

[Close]

BLAST of Carg05008 vs. TrEMBL
Match: tr|B9RMD0|B9RMD0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1079710 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 0


Query: 1   MEKEQRLELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTES 60
           ME  Q+L+LI  AI++LL E +N +       H   E+ D  LL+ LLS++E LK G+  
Sbjct: 1   MESSQKLKLIDEAIKKLLAEKRNSKEVSG---HSSQEDNDHHLLNRLLSELEVLKGGSTV 60

Query: 61  EELASALDNLKSKAXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVWQL 120
           EE     D+   +              E+IVKELK VKRQN++T CL+S +IV+TV WQ+
Sbjct: 61  EESEDEADSASVEKPDEEVGSSTEIGAEEIVKELKHVKRQNIVTHCLLSALIVITVAWQV 120

Query: 121 SEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPK-QEHDEASMLPTLQIPELPH 180
           SEVS++L +KD  +HPF+  GS+++G +K P    +++ K +EH EAS    L +PELPH
Sbjct: 121 SEVSLILKLKDGFTHPFKSFGSVLAGMIKLPGANTKDAEKDKEHTEAS--SPLHMPELPH 176

[Close]

BLAST of Carg05008 vs. TrEMBL
Match: tr|A0A2C9UMU0|A0A2C9UMU0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G010300 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 76/185 (41.08%), Postives = 115/185 (62.16%), Query Frame = 0


Query: 8   ELIKLAIERLLDENKNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLKEGTESEELASAL 67
           EL+  AI++L     NK+SS  +   D D   D+ LL  LLS++ESLK G + E+  ++ 
Sbjct: 4   ELVDKAIQKL-----NKESSPDTLQEDRDT--DKLLLSRLLSELESLKSGRKVEKSEASA 63

Query: 68  D---------NLKSKAXXXXXXXXXXFSREDIVKELKKVKRQNVLTQCLVSVMIVVTVVW 127
           +          LK++              E+I+KELKKV++QN++T CL+S MIV+T+ W
Sbjct: 64  EQKDPLVGEAELKNEKATRVENSSSQIGAEEIMKELKKVRKQNIVTHCLLSAMIVLTLAW 123

Query: 128 QLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHDEASMLPT-LQIPEL 183
           QLSEVS++L VKD ++HPF+ LGS+I G L  P++ V+++  ++H EAS     L +PEL
Sbjct: 124 QLSEVSLILKVKDGLNHPFKSLGSMIKGMLIAPRSNVQDAETEQHSEASSSSVHLHMPEL 181

[Close]

BLAST of Carg05008 vs. TrEMBL
Match: tr|A0A2N9HE06|A0A2N9HE06_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38294 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 86/197 (43.65%), Postives = 118/197 (59.90%), Query Frame = 0


Query: 1   MEKEQRLEL--IKLAIERLLDEN--KNKQSSDRSYIHDCDENGDRTLLHDLLSQIESLK- 60
           ME  Q+LEL    +AI+RL++E   K K++S    + D   + D  LL  LLSQ+ESLK 
Sbjct: 1   MESNQKLELEVTIIAIQRLVEEKKMKMKEASSDCLVQDDVVDDDHLLLSRLLSQLESLKG 60

Query: 61  --------EGTESEELAS-ALDNLKSKAXXXXXXXXXXFSREDIVKELKKVKRQNVLTQC 120
                     TE EE++S A+ N++ K              E+IVKELKK+K+QN +T C
Sbjct: 61  DGAIKEAEASTEIEEVSSAAVGNVERKND----------GTEEIVKELKKLKKQNFVTHC 120

Query: 121 LVSVMIVVTVVWQLSEVSIMLNVKDQISHPFRFLGSLISGALKRPKTIVENSPKQEHD-- 180
           L+SVMIV+TV WQLSEVS++L V+D + HPFR  G L+   LK P T  +++ KQ     
Sbjct: 121 LLSVMIVLTVAWQLSEVSLILKVRDGLKHPFRSFGGLLGAMLKGPDTNGQDAEKQSSKQL 180

The following BLAST results are available for this feature:

BLAST of Carg05008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522745.1	1.8e-78	90.37	uncharacterized protein LOC111786748 [Cucurbita pepo subsp. pepo] >XP_023513706....	[more]
XP_022959912.1	1.1e-64	82.89	uncharacterized protein LOC111460826 [Cucurbita moschata] >XP_022959913.1 unchar...	[more]
XP_008459843.1	3.0e-57	68.25	PREDICTED: uncharacterized protein LOC103498843 [Cucumis melo]	[more]
XP_004140639.1	6.3e-55	67.55	PREDICTED: uncharacterized protein LOC101222559 isoform X2 [Cucumis sativus] >KG...	[more]
XP_023004225.1	2.2e-52	68.32	uncharacterized protein LOC111497620 [Cucurbita maxima]	[more]

BLAST of Carg05008 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27300.1	5.4e-08	32.64	unknown protein	[more]

BLAST of Carg05008 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05008 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAM6\|A0A1S3CAM6_CUCME	2.0e-57	68.25	uncharacterized protein LOC103498843 OS=Cucumis melo OX=3656 GN=LOC103498843 PE=...	[more]
tr\|A0A0A0K9P4\|A0A0A0K9P4_CUCSA	4.2e-55	67.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095320 PE=4 SV=1	[more]
tr\|B9RMD0\|B9RMD0_RICCO	2.6e-25	41.99	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1079710 PE=4 SV=1	[more]
tr\|A0A2C9UMU0\|A0A2C9UMU0_MANES	1.3e-24	41.08	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G010300 PE=4 SV=...	[more]
tr\|A0A2N9HE06\|A0A2N9HE06_FAGSY	2.9e-24	43.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38294 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05008-RA	Carg05008-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	PANTHER	PTHR35280	FAMILY NOT NAMED	coord: 60..178

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05008	Csa6G095320	Cucumber (Chinese Long) v2	carcuB0090
Carg05008	MELO3C022311	Melon (DHL92) v3.5.1	carmeB0082
Carg05008	ClCG06G002190	Watermelon (Charleston Gray)	carwcgB0082
Carg05008	CSPI06G07870	Wild cucumber (PI 183967)	carcpiB0094
Carg05008	Cucsa.349700	Cucumber (Gy14) v1	carcgyB0096
Carg05008	CmaCh08G001780	Cucurbita maxima (Rimu)	carcmaB0112
Carg05008	CmoCh08G001810	Cucurbita moschata (Rifu)	carcmoB0119
Carg05008	Cp4.1LG17g10740	Cucurbita pepo (Zucchini)	carcpeB0125
Carg05008	CsGy6G007920	Cucumber (Gy14) v2	carcgybB0090
Carg05008	MELO3C022311.2	Melon (DHL92) v3.6.1	carmedB0083
Carg05008	CsaV3_6G008260	Cucumber (Chinese Long) v3	carcucB0097
Carg05008	Cla97C06G111510	Watermelon (97103) v2	carwmbB0077
Carg05008	Bhi12G002184	Wax gourd	carwgoB0091

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05008	Cucurbita pepo (Zucchini)	carcpeB0127
Carg05008	Silver-seed gourd	carcarB010
Carg05008	Cucurbita maxima (Rimu)	carcmaB0106
Carg05008	Cucurbita moschata (Rifu)	carcmoB0114
Carg05008	Bottle gourd (USVL1VR-Ls)	carlsiB073