Carg04131 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04131
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RRP15-like protein
Location	Cucurbita_argyrosperma_scaffold_044 : 351431 .. 355172 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATATTTCTGTCCGACGCCGTATCAGCAGCTGCCGCCGAACGCTGCACTGTCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGAGTTAATTATATCTGTTTTTCTTCTTCTTAGAAACACAGTGGTTCAGCCCCTTACCTGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGGTTTTATTTATTTTTATATGTTGCTACGTTGGGCTATGTTGGTATGTTCTCTTCACCGACGGAGAAGAAAACTAAGAACGAATATGTTGCAAATTAGAGGAAGATAAAAACAGATTGAATCCGAAGGAACATATAAACATATCATTCTTATCCGAATCATTAGATAAAAAGGATAAAATGTGTAAGAACATGAACATAGCAAAGGAGAAACTCGCATATAGTTTGGGTTTCTAAAAAAAATGATTGAAATTATTGTTATCAATAAAAAAAAACCAATAATGGACAAACAAAATAGAAAGTTAACATTGAGTTTGAGTGTGATTGAATGTCATTGAGTCTTCTTGAGTATACAAGAAACTATAGATGCATATGAACTGGCATAGGGTAGCTTTTGTTGCTCAATTCATGTAATTTTTTTTTCTTAAGCCGTTGATTTCATTTTTTTTTTGGAATCCAAGTACACTGATTTTAAAATCCATCAAAATTCAGGGGTTAAGATTGTTGAAACATTTGTTTGGGATAAGCTGTGCATTTGAATCAGTATCATGGTTGACGACTGGAATGCAGTAGAATTGGTGAGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCGAGGATGAAGAAACAAGATGGGTGGAAGTGGGAACAAAGTTAAGGTTGATAGGAAGATGAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATAACGACGATGACGAGAAAGCTCCGGTGATTGGAGACGAAACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGATCTCGAGCTATCTGAAGACGATGAAAATGGTGATATTCAACCAGGTATAGCTAAGTTTACAGAAGGTTGTAGAGCATTCCGGGCTGCATTACGGAGTATCCTCAAGAAGAGCATATCTGATGAAACTCTGGTAGTATATATCTTAAATGGGACGGAATTATTTTCAATAGTTGAAGTAATAAGAAAAGTAATTGTGCCATGTTTGTGTTGCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGAGGAAAGTTAAAAGGAGAGGCCAAGAAAGAGAAACAAACGGTATTTCCTTTTAAATAAAAGATTTTGCTTGCTTATAATTTAGCTTTTGCTTAGAATTTGTTGATTGCAAATGTGGGATCTCACAATCCACCCCTTTCGGGGTCCAGCGTCCTTGCTGGCCTTCGTTCCCTTCTTCAATCGATGTGGGATCCCCCAATCCACCTCCTTCAGGGCCAGTATTTTTGTTGGCACACCGCCTCGTGTCCACCCCCTTCTGGGTTCAGCCTCCTCGTTGGCACATCACTCGGTGTCTAACTCTGATACCATTTGTAATGGCCCAAGCCTGCCGCTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAATGCGTCTCCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTTGTTTTCTTCTCCAATCGATGTGGGTCTCACAGCAAATGTTTGAATAGGTGGGAGAAAAAGGCCATGTGAAACCTGCTACTTGGATTCTAATGAAAAGTTTCTTATTGGCGTTGCTACTAAAGGAGGTAGCCTAGTTCGATTTTACTTTGAGTTGGGAAAGGTTTTCTTTTTTATTTCAACGGTGATTATTACATCTCTCATCATACTAACACAGTAATCTCCATGTGTATTGCTGCTTGTCGATTGTCAGTTGTCAAGTTGTTTAACGCTGTAAGTAGCCAAATTTTGATATCGGACAACTTTTTTGTCACATCCTCATCTATGTTGCATTCATCGCTGAATTCCATTATTTTGAATATGATACAGGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGTATTAGGCCTTTTACGTAACTTTGATCTCAGAAGTTAACAATTTCACTTTCTTTTATCTTGCCTTGTGAATATGCTGTCCCTAAATTAGCATTCAATTAATTTTGGTGCTTCTGCATGTTGCATTATATTCAATCTTGTAGCTTAATTTTCCTATTCCTATGATGTATGCCACCTTATATTCTGTTTTGTGGTTTCTGCATTGTCCTTGTTGAAAACCCTTGTTATGTAATAGCTCAAACCCACCGCTAGCAGATATTATCTTTTTTGGGCTTTTCTTTTCGAGCTTCCTCTCAAGGTTTTAAAACGTGTTTGGTAGGGAGAGGTTTCCACGTCTTTATAAGGAATGTTCGTTCCCCTCTGCAACCGATGCGGAATCTCACATGTTAAACTCCTAATTAATGAATCATTGGCAACTTTACTAATTTGCTGACTTTGATTGGGAATCTGTGTGGTTGAAGTAGCCAGTGATTTAAAAGGCACGTGTCTCGAATTTATTGACCTATTAGTCTCTCGCGCGTACTTCTAGTCAACTAACACTTTCCCCTGTGGCTTATATAGGACTACTAATGTTTAGCGAACCCTGTTAGACCCGCTTTTGTTTGCATATTAAGACGCTTATTCTTCCGTTCTTGACTTGTGATTATGTGAGTAGCTACTCAATATTGAAGGTGAACGATATCCTTAACTTTTTCGTTCTATCCCGTCTCATACGCAATAAATAAATGCAGGAAAGAAGCTTTCTTTTCTGTGTTGGGCAAGACAATTTTGTCAGCAACAAACAGTAATGCAAAGGTTGGTTATTTTCTGCTATAGAATTTGATAAATTTATTGGAGCTTTTAACCAATTGTTGTTAAATTCTTTATTAATTCTCTTACAAGCAATGATACTTTCGACAAACACCTGAGGAGGCATACCGACTTGTGGCATCCTCATCTTCATTATCGTGTTTATGTGCACTGGAATGGGGACTGGTAGGGGGATGTCCATGGGGTTGGGCAGGGGTCGGGATGGCTTACATGTCCTCACGAAATTTCCTATAAAATTTTATGAAAAAAGGTTGGGATGGGGAATGGGGACTAGTCCATGCAGGGGCGTGGAAAATGGACAGCTCTAGGGGATGGGGTGCATGTTAGTTAAGAGAGTGAAGCTCAGGTCAAGTCACGATCATATATTATCTGTTTCTTCATGTCCATAATGAAACTCAAATGGCCATCTTTATGTTGAACAGTACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAAGATTTACTTTCAAAGCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATCAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTAA

mRNA sequence

CCACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATATTTCTGTCCGACGCCGTATCAGCAGCTGCCGCCGAACGCTGCACTGTCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGATGGTTCAGCCCCTTACCTGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGTAGAATTGGTGAGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCGAGGATGAAGAAACAAGATGGGTGGAAGTGGGAACAAAGTTAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATAACGACGATGACGAGAAAGCTCCGGTGATTGGAGACGAAACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGATCTCGAGCTATCTGAAGACGATGAAAATGGTGATATTCAACCAGGTATAGCTAAGTTTACAGAAGGTTGTAGAGCATTCCGGGCTGCATTACGGAGTATCCTCAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGAGGAAAGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGAAAGAAGCTTTCTTTTCTGTGTTGGGCAAGACAATTTTGTCAGCAACAAACATACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAAGATTTACTTTCAAAGCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATCAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTAA

Coding sequence (CDS)

CCACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATATTTCTGTCCGACGCCGTATCAGCAGCTGCCGCCGAACGCTGCACTGTCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGATGGTTCAGCCCCTTACCTGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGTAGAATTGGTGAGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCGAGGATGAAGAAACAAGATGGGTGGAAGTGGGAACAAAGTTAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATAACGACGATGACGAGAAAGCTCCGGTGATTGGAGACGAAACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGATCTCGAGCTATCTGAAGACGATGAAAATGGTGATATTCAACCAGGTATAGCTAAGTTTACAGAAGGTTGTAGAGCATTCCGGGCTGCATTACGGAGTATCCTCAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGAGGAAAGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGAAAGAAGCTTTCTTTTCTGTGTTGGGCAAGACAATTTTGTCAGCAACAAACATACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAA

Protein sequence

PRSPSITAPYSVDELRTIFLSDAVSAAAAERCTVSCRSIPTKSSLPTPSHTLLPLRAIRWFSPLPAPPLRIFRSPSRIGERCEEKEKDGFQEQEKTEDEETRWVEVGTKLRNSSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVNKAQHAQKGLNPSRAKDVKGKKLSFLCWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSKLKDWDKMPVR

Homology

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BLAST of Carg04131 vs. NCBI nr
Match: XP_022952710.1 (LOW QUALITY PROTEIN: RRP15-like protein [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 4.1e-75
Identity = 173/258 (67.05%), Postives = 180/258 (69.77%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 163
           V+V  K++    K   EYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD
Sbjct: 38  VKVHRKMKKLFQKRAXEYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 97

Query: 164 VNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE 223
           +NADLE SEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE
Sbjct: 98  INADLEPSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAE 157

Query: 224 KLAEEEAERK---------------------------------------------VNKAQ 283
           KLAEEEAERK                                             VNKAQ
Sbjct: 158 KLAEEEAERKVKGEAKKEKQTVGEKGHVKPATYLDSNEKFLIGVATKGVVKLFNAVNKAQ 217

Query: 284 HAQKGLNPSRAKDV----KGKKLSFLCWARQFCQQQTY------TSGGAVDAEGPAWAPL 306
           HAQKGLNPSRAKDV    K +K +F     +     T       TSGGAVDAEGPAWAPL
Sbjct: 218 HAQKGLNPSRAKDVEAINKRRKEAFFSVLGKTILSATNSNAKLDTSGGAVDAEGPAWAPL 277

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BLAST of Carg04131 vs. NCBI nr
Match: XP_008462030.1 (PREDICTED: RRP15-like protein [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 7.5e-61
Identity = 149/248 (60.08%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 115 KSGREYNLDDNDDD-EKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSED 174
           K  REYN DD+D+D EKAP + +E+K  + SH EEVGDEE SEGEEE KDVNAD+ELSED
Sbjct: 50  KRAREYNSDDDDNDGEKAPTVKNESKILVHSHEEEVGDEELSEGEEERKDVNADVELSED 109

Query: 175 DENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK 234
           DENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK
Sbjct: 110 DENGEIQPGITKFTEGCRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERK 169

Query: 235 ---------------------------------------------VNKAQHAQKGLNPSR 294
                                                        VNKAQHAQKGLNPSR
Sbjct: 170 VKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR 229

Query: 295 AKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSK 306
            KD K     +K +F         +      +  TSGGA DAEGPAWAPLRDNYMLTNSK
Sbjct: 230 TKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSK 289

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BLAST of Carg04131 vs. NCBI nr
Match: XP_004144556.1 (PREDICTED: RRP15-like protein [Cucumis sativus] >XP_011658649.1 PREDICTED: RRP15-like protein [Cucumis sativus] >KGN43394.1 hypothetical protein Csa_7G031550 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.7e-55
Identity = 136/225 (60.44%), Postives = 145/225 (64.44%), Query Frame = 0


Query: 137 ETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAA 196
           E+K  + SH EEVGDEEFSEGEEE KDVNAD+ELSEDDENG+IQPGI KFTEGCRAFRAA
Sbjct: 73  ESKILVRSHEEEVGDEEFSEGEEERKDVNADVELSEDDENGEIQPGITKFTEGCRAFRAA 132

Query: 197 LRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK----------------------- 256
             SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK                       
Sbjct: 133 FMSILKKNISDETLGPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATY 192

Query: 257 ----------------------VNKAQHAQKGLNPSRAKDVKG----KKLSFL------C 306
                                 VNKAQHAQKGLNPSR KD K     +K +F        
Sbjct: 193 LDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPT 252

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BLAST of Carg04131 vs. NCBI nr
Match: XP_022135749.1 (RRP15-like protein [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 4.0e-54
Identity = 137/226 (60.62%), Postives = 144/226 (63.72%), Query Frame = 0


Query: 135 GDETKTSMLSHEEVGDEEFSEGE-EEGKDVNADLELSEDDENGDIQPGIAKFTEGCRAFR 194
           GDE+  S+ S EE  DEEF E E  EGKDVNAD ELSEDDENG+IQPGI KFTEGCRAFR
Sbjct: 73  GDESTVSLRSPEEDRDEEFPEDEGGEGKDVNADAELSEDDENGEIQPGITKFTEGCRAFR 132

Query: 195 AALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK--------------------- 254
           AA RSILKKS+SDETLGPILSANKKLVAEKLAEEEAERK                     
Sbjct: 133 AAFRSILKKSVSDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLVAEKGHVKPA 192

Query: 255 ------------------------VNKAQHAQKGLNPSRAKDVKG----KKLSFLCWARQ 306
                                   VNKAQHAQKGLNPSRAKD K     +K +F     +
Sbjct: 193 NYLDFHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAITKRRKEAFFSELGK 252

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BLAST of Carg04131 vs. NCBI nr
Match: XP_023529755.1 (RRP15-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.3 bits (477), Expect = 3.8e-44
Identity = 115/199 (57.79%), Postives = 122/199 (61.31%), Query Frame = 0


Query: 162 DVNADLELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVA 221
           DVN+D  LSEDDE+G +QPGI KF EGCRAFRAA RSILKKSISDETLGPILSANKKLVA
Sbjct: 98  DVNSDAGLSEDDESGVMQPGITKFIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVA 157

Query: 222 EKLAEEEAERK---------------------------------------------VNKA 281
           EKLAEEEAERK                                             VNKA
Sbjct: 158 EKLAEEEAERKVKGEAKKEKQLMAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKA 217

Query: 282 QHAQKGLNPSRAKDVKG----KKLSFLCWARQFCQQQT------YTSGGAVDAEGPAWAP 306
           QHAQKGLNPSRAKD K     +K +F     +     T       TSG A +AEGPAWAP
Sbjct: 218 QHAQKGLNPSRAKDAKAISKRRKEAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAP 277

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BLAST of Carg04131 vs. TAIR10
Match: AT5G48240.3 (unknown protein)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-22
Identity = 82/243 (33.74%), Postives = 103/243 (42.39%), Query Frame = 0


Query: 168 ELSEDDE--------NGDIQPGIAKF-TEGCRAFRAALRSILKKSISDETLGPILSANKK 227
           E+ E+D         +G+I+ GI KF T+GC AF+ A ++I+KK+  D+TLGP+LSA+K 
Sbjct: 98  EIGEEDNXXXXXXXXHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKH 157

Query: 228 LVAEKLAEEEAERK---------------------------------------------V 287
           L+ EKLAE+EAE+K                                             V
Sbjct: 158 LIGEKLAEDEAEKKAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAV 217

Query: 288 NKAQHAQKGLNPSRAKDV----KGKKLSFLCWARQFCQQQTYTSGGAVDA---------- 304
           NKAQHAQKGLNPSR+KD     K +K +FL         +T T     DA          
Sbjct: 218 NKAQHAQKGLNPSRSKDAKVLKKRRKEAFLSEL-----GKTKTDTKPFDAXXXXXXXXXX 277

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BLAST of Carg04131 vs. TrEMBL
Match: tr|A0A1S3CFX9|A0A1S3CFX9_CUCME (RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.0e-61
Identity = 149/248 (60.08%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 115 KSGREYNLDDNDDD-EKAPVIGDETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSED 174
           K  REYN DD+D+D EKAP + +E+K  + SH EEVGDEE SEGEEE KDVNAD+ELSED
Sbjct: 50  KRAREYNSDDDDNDGEKAPTVKNESKILVHSHEEEVGDEELSEGEEERKDVNADVELSED 109

Query: 175 DENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK 234
           DENG+IQPGI KFTEGCRAFRAA  SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK
Sbjct: 110 DENGEIQPGITKFTEGCRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERK 169

Query: 235 ---------------------------------------------VNKAQHAQKGLNPSR 294
                                                        VNKAQHAQKGLNPSR
Sbjct: 170 VKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR 229

Query: 295 AKDVKG----KKLSFL------CWARQFCQQQTYTSGGAVDAEGPAWAPLRDNYMLTNSK 306
            KD K     +K +F         +      +  TSGGA DAEGPAWAPLRDNYMLTNSK
Sbjct: 230 TKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSK 289

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BLAST of Carg04131 vs. TrEMBL
Match: tr|A0A0A0K320|A0A0A0K320_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 136/225 (60.44%), Postives = 145/225 (64.44%), Query Frame = 0


Query: 137 ETKTSMLSH-EEVGDEEFSEGEEEGKDVNADLELSEDDENGDIQPGIAKFTEGCRAFRAA 196
           E+K  + SH EEVGDEEFSEGEEE KDVNAD+ELSEDDENG+IQPGI KFTEGCRAFRAA
Sbjct: 73  ESKILVRSHEEEVGDEEFSEGEEERKDVNADVELSEDDENGEIQPGITKFTEGCRAFRAA 132

Query: 197 LRSILKKSISDETLGPILSANKKLVAEKLAEEEAERK----------------------- 256
             SILKK+ISDETLGPILSANKKLVAEKLAEEEAERK                       
Sbjct: 133 FMSILKKNISDETLGPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATY 192

Query: 257 ----------------------VNKAQHAQKGLNPSRAKDVKG----KKLSFL------C 306
                                 VNKAQHAQKGLNPSR KD K     +K +F        
Sbjct: 193 LDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPT 252

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BLAST of Carg04131 vs. TrEMBL
Match: tr|A0A2H5PRY2|A0A2H5PRY2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_161980 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 113/259 (43.63%), Postives = 141/259 (54.44%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 163
           V++  K+R    K  R YN DD D+ E AP    ++  S+ + E  G        E+G D
Sbjct: 41  VKINNKMRKLFRKRARAYNSDD-DEAESAPEFRGDSSLSVKNQEVEGRGSSDTEREDGMD 100

Query: 164 VNAD-LELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVA 223
           ++ +  E S+D+ENG+IQPGIA F EG RAF+ A +SIL+KS++D+ LGP+LSA+KKL  
Sbjct: 101 LDVENEEFSDDEENGEIQPGIANFAEGSRAFKMAFKSILRKSVADDALGPVLSAHKKLFG 160

Query: 224 EKLAEEEAERK---------------------------------------------VNKA 283
           EKLAEEEAERK                                             VNKA
Sbjct: 161 EKLAEEEAERKVKGEAKKERHLAAEKGHVKPANYLDSCEKFLIGVATKGVVKLFNAVNKA 220

Query: 284 QHAQKGLNPSRAKDVK-GKKLSFLCWARQFCQQQTYT---------SGGAVDAEGPAWAP 306
           QHAQKGLNPSR+KD K  KK     +  +  +    T         S G  D EGPAWAP
Sbjct: 221 QHAQKGLNPSRSKDEKLLKKRRKETFFSELGKTSVSTADACAKGPNSSGTADGEGPAWAP 280

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BLAST of Carg04131 vs. TrEMBL
Match: tr|V4UA95|V4UA95_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10015959mg PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 113/259 (43.63%), Postives = 141/259 (54.44%), Query Frame = 0


Query: 104 VEVGTKLRN-SSKSGREYNLDDNDDDEKAPVIGDETKTSMLSHEEVGDEEFSEGEEEGKD 163
           V++  K+R    K  R YN DD D+ E AP    ++  S+ + E  G        E+G D
Sbjct: 41  VKINNKMRKLFRKRARAYNSDD-DEAESAPEFRGDSSLSVKNQEVEGRGSSDTEREDGMD 100

Query: 164 VNAD-LELSEDDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVA 223
           ++ +  E S+D+ENG+IQPGIA F EG RAF+ A +SIL+KS++D+ LGP+LSA+KKL  
Sbjct: 101 LDVENEEFSDDEENGEIQPGIANFAEGSRAFKMAFKSILRKSVADDALGPVLSAHKKLFG 160

Query: 224 EKLAEEEAERK---------------------------------------------VNKA 283
           EKLAEEEAERK                                             VNKA
Sbjct: 161 EKLAEEEAERKVKGEAKKERHLAAEKGHVKPANYLDSCEKFLIGVATKGVVKLFNAVNKA 220

Query: 284 QHAQKGLNPSRAKDVK-GKKLSFLCWARQFCQQQTYT---------SGGAVDAEGPAWAP 306
           QHAQKGLNPSR+KD K  KK     +  +  +    T         S G  D EGPAWAP
Sbjct: 221 QHAQKGLNPSRSKDEKLLKKRRKETFFSELGKTSVSTADACAKGPNSSGTADGEGPAWAP 280

[Close]

BLAST of Carg04131 vs. TrEMBL
Match: tr|A0A2P5BV60|A0A2P5BV60_PARAD (Rrp15p protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207870 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 95/155 (61.29%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 172 DDENGDIQPGIAKFTEGCRAFRAALRSILKKSISDETLGPILSANKKLVAEKLAEEEAER 231
           D+E+G+IQPGI KFTEGCRAFR A +SI KKS+ D+ LGP+LSA+KKLVAEKLAEEEAER
Sbjct: 104 DEEDGEIQPGITKFTEGCRAFRMAFKSITKKSVQDDGLGPVLSAHKKLVAEKLAEEEAER 163

Query: 232 K-----------VNKAQHAQKGLNPSRAKDV----KGKKLSFL--CWARQFCQQQT---- 291
           K           VNKAQ+AQKGL+PSR+KD     K +K +F      R      T    
Sbjct: 164 KVKGEAKKEKHLVNKAQNAQKGLDPSRSKDAKVLRKRRKEAFFSELGKRPVSAANTPAMV 223

Query: 292 YTSGGAVDAEGPAWAPLRDNYMLTNSKLKDWDKMP 306
            +S G  D E PAWAPLRDNYMLTNSKLKDWDKMP
Sbjct: 224 QSSTGQADGEAPAWAPLRDNYMLTNSKLKDWDKMP 258

The following BLAST results are available for this feature:

BLAST of Carg04131 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952710.1	4.1e-75	67.05	LOW QUALITY PROTEIN: RRP15-like protein [Cucurbita moschata]	[more]
XP_008462030.1	7.5e-61	60.08	PREDICTED: RRP15-like protein [Cucumis melo]	[more]
XP_004144556.1	4.7e-55	60.44	PREDICTED: RRP15-like protein [Cucumis sativus] >XP_011658649.1 PREDICTED: RRP15...	[more]
XP_022135749.1	4.0e-54	60.62	RRP15-like protein [Momordica charantia]	[more]
XP_023529755.1	3.8e-44	57.79	RRP15-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg04131 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48240.3	2.9e-22	33.74	unknown protein	[more]

BLAST of Carg04131 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04131 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFX9\|A0A1S3CFX9_CUCME	5.0e-61	60.08	RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=4 SV=1	[more]
tr\|A0A0A0K320\|A0A0A0K320_CUCSA	3.1e-55	60.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=4 SV=1	[more]
tr\|A0A2H5PRY2\|A0A2H5PRY2_CITUN	4.5e-38	43.63	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_161980 PE=4 SV=1	[more]
tr\|V4UA95\|V4UA95_9ROSI	4.5e-38	43.63	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10015959mg PE=4 ...	[more]
tr\|A0A2P5BV60\|A0A2P5BV60_PARAD	4.5e-38	61.29	Rrp15p protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207870 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR012459	Rrp15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04131-RA	Carg04131-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..162
IPR012459	Ribosomal RNA-processing protein 15	PANTHER	PTHR13245	FAMILY NOT NAMED	coord: 268..304 coord: 93..241

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04131	Cla015705	Watermelon (97103) v1	carwmB0194
Carg04131	Csa7G031550	Cucumber (Chinese Long) v2	carcuB0228
Carg04131	MELO3C024180	Melon (DHL92) v3.5.1	carmeB0199
Carg04131	ClCG02G003040	Watermelon (Charleston Gray)	carwcgB0194
Carg04131	CSPI07G02530	Wild cucumber (PI 183967)	carcpiB0235
Carg04131	Cucsa.100140	Cucumber (Gy14) v1	carcgyB0237
Carg04131	CmaCh19G008380	Cucurbita maxima (Rimu)	carcmaB0279
Carg04131	CmaCh11G013040	Cucurbita maxima (Rimu)	carcmaB0269
Carg04131	CmoCh11G018170	Cucurbita moschata (Rifu)	carcmoB0278
Carg04131	CmoCh19G008540	Cucurbita moschata (Rifu)	carcmoB0286
Carg04131	Lsi11G013320	Bottle gourd (USVL1VR-Ls)	carlsiB174
Carg04131	Cp4.1LG04g04260	Cucurbita pepo (Zucchini)	carcpeB0289
Carg04131	CsGy7G002200	Cucumber (Gy14) v2	carcgybB0217
Carg04131	MELO3C024180.2	Melon (DHL92) v3.6.1	carmedB0204
Carg04131	CsaV3_7G002370	Cucumber (Chinese Long) v3	carcucB0232
Carg04131	Cla97C02G029550	Watermelon (97103) v2	carwmbB0202
Carg04131	Bhi05G001313	Wax gourd	carwgoB0251

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04131	Carg18088	Silver-seed gourd	carcarB242

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04131	Silver-seed gourd	carcarB232
Carg04131	Silver-seed gourd	carcarB235
Carg04131	Silver-seed gourd	carcarB241
Carg04131	Cucumber (Gy14) v2	carcgybB0216
Carg04131	Cucumber (Gy14) v1	carcgyB0240
Carg04131	Cucurbita maxima (Rimu)	carcmaB0272
Carg04131	Cucurbita maxima (Rimu)	carcmaB0280
Carg04131	Cucurbita moschata (Rifu)	carcmoB0276
Carg04131	Cucurbita moschata (Rifu)	carcmoB0287
Carg04131	Cucurbita pepo (Zucchini)	carcpeB0281
Carg04131	Cucurbita pepo (Zucchini)	carcpeB0282
Carg04131	Cucurbita pepo (Zucchini)	carcpeB0288
Carg04131	Wild cucumber (PI 183967)	carcpiB0234
Carg04131	Cucumber (Chinese Long) v2	carcuB0227
Carg04131	Cucumber (Chinese Long) v3	carcucB0231
Carg04131	Bottle gourd (USVL1VR-Ls)	carlsiB173
Carg04131	Melon (DHL92) v3.5.1	carmeB0197
Carg04131	Melon (DHL92) v3.6.1	carmedB0202
Carg04131	Wax gourd	carwgoB0252