Carg03905 (gene) Silver-seed gourd

Overview
NameCarg03905
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEG45-like domain containing protein
LocationCucurbita_argyrosperma_scaffold_011 : 739079 .. 739563 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAGCCTCTGTTTCTCTCCGTCTTCTTCCTCGCTCATCTCTTCCATCTCTCCCATGGAGATATCGGCACTGCAACGCATTACAGTCCTCCATATTTACGTAAGTTCCATTTCATTTGCATTCTTCATGTTCTTGATTCACGGTGGTAATTGAATGAATAAATGAAATTTACACAGCCACCGCCTGTGCCGGAAACGATATCTCTCTGTTTCCGGCGAGTAATCTGTTCGCGGCGGCCGGAGAGGGAATATGGGAGAACGGAGCGGCTTGTGGAAGACAATACCTAGTGAGATGCTTCAGCGCCGCCGTACCGATGTCGTGCGTTCCGGATCAGACGATTCAGGTCACGATAGTCGATCGTGCGATTTCAACGGTGTCGAAGCCAGCGAAAGCGGCTACGACGATGGTACTGTCAACGACGGCGTATAAATCCATCGTTCAAAGAAATGTGGCCTTCGTGAATGTCGAATTTCGGGAGTGA

mRNA sequence

ATGTCGAAGCCTCTGTTTCTCTCCGTCTTCTTCCTCGCTCATCTCTTCCATCTCTCCCATGGAGATATCGGCACTGCAACGCATTACAGTCCTCCATATTTACCCACCGCCTGTGCCGGAAACGATATCTCTCTGTTTCCGGCGAGTAATCTGTTCGCGGCGGCCGGAGAGGGAATATGGGAGAACGGAGCGGCTTGTGGAAGACAATACCTAGTGAGATGCTTCAGCGCCGCCGTACCGATGTCGTGCGTTCCGGATCAGACGATTCAGGTCACGATAGTCGATCGTGCGATTTCAACGGTGTCGAAGCCAGCGAAAGCGGCTACGACGATGGTACTGTCAACGACGGCGTATAAATCCATCGTTCAAAGAAATGTGGCCTTCGTGAATGTCGAATTTCGGGAGTGA

Coding sequence (CDS)

ATGTCGAAGCCTCTGTTTCTCTCCGTCTTCTTCCTCGCTCATCTCTTCCATCTCTCCCATGGAGATATCGGCACTGCAACGCATTACAGTCCTCCATATTTACCCACCGCCTGTGCCGGAAACGATATCTCTCTGTTTCCGGCGAGTAATCTGTTCGCGGCGGCCGGAGAGGGAATATGGGAGAACGGAGCGGCTTGTGGAAGACAATACCTAGTGAGATGCTTCAGCGCCGCCGTACCGATGTCGTGCGTTCCGGATCAGACGATTCAGGTCACGATAGTCGATCGTGCGATTTCAACGGTGTCGAAGCCAGCGAAAGCGGCTACGACGATGGTACTGTCAACGACGGCGTATAAATCCATCGTTCAAAGAAATGTGGCCTTCGTGAATGTCGAATTTCGGGAGTGA

Protein sequence

MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIWENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKSIVQRNVAFVNVEFRE
Homology
[Close]
BLAST of Carg03905 vs. NCBI nr
Match: XP_022951750.1 (EG45-like domain containing protein [Cucurbita moschata])

HSP 1 Score: 266.9 bits (681), Expect = 3.7e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIW 60
           MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIW
Sbjct: 1   MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIW 60

Query: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120
           ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS
Sbjct: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120

Query: 121 IVQRNVAFVNVEFRE 136
           IVQRNVAFVNVEFRE
Sbjct: 121 IVQRNVAFVNVEFRE 135

[Close]
BLAST of Carg03905 vs. NCBI nr
Match: XP_023538325.1 (EG45-like domain containing protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 1.4e-67
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIW 60
           MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPAS+LFAAAGEGIW
Sbjct: 1   MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASSLFAAAGEGIW 60

Query: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120
           ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS
Sbjct: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120

Query: 121 IVQRNVAFVNVEFRE 136
           IVQRNVAFVNVEFRE
Sbjct: 121 IVQRNVAFVNVEFRE 135

[Close]
BLAST of Carg03905 vs. NCBI nr
Match: XP_023002544.1 (EG45-like domain containing protein [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 5.3e-67
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIW 60
           MSKPLFLSVFFLAHLFHL HGDIGTATHYSPPYLPTACAGNDISLFPAS+LFAAAGEGIW
Sbjct: 1   MSKPLFLSVFFLAHLFHLCHGDIGTATHYSPPYLPTACAGNDISLFPASSLFAAAGEGIW 60

Query: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120
           ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS
Sbjct: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120

Query: 121 IVQRNVAFVNVEFRE 136
           IVQRNVAFVNVEFRE
Sbjct: 121 IVQRNVAFVNVEFRE 135

[Close]
BLAST of Carg03905 vs. NCBI nr
Match: XP_022962593.1 (EG45-like domain containing protein [Cucurbita moschata] >XP_022962594.1 EG45-like domain containing protein [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 4.8e-52
Identity = 110/140 (78.57%), Postives = 118/140 (84.29%), Query Frame = 0 

Query: 1   MSKPLFL-----SVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAA 60
           MS PLFL     SVFF AHLF   HGD+GTAT Y+ PYLPTACAG D S FPA+NLFAAA
Sbjct: 1   MSNPLFLSGFLFSVFFAAHLFQFCHGDLGTATFYTAPYLPTACAGKDTSAFPANNLFAAA 60

Query: 61  GEGIWENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLST 120
           GEGIWENGAACGRQY VRCFSA VP SCVPDQ IQVTIVDRAISTV+KPA+  TTMVLST
Sbjct: 61  GEGIWENGAACGRQYQVRCFSADVPKSCVPDQIIQVTIVDRAISTVTKPARGDTTMVLST 120

Query: 121 TAYKSIVQRNVAFVNVEFRE 136
           TAYKSIVQR+V+ VN+EFRE
Sbjct: 121 TAYKSIVQRSVSLVNIEFRE 140

[Close]
BLAST of Carg03905 vs. NCBI nr
Match: XP_022996669.1 (EG45-like domain containing protein [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 107/140 (76.43%), Postives = 116/140 (82.86%), Query Frame = 0 

Query: 1   MSKPLFL-----SVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAA 60
           MS PLFL     S FF AHLF   HGD+GTAT Y+ PYLPTACAG D S+FPASNLFAAA
Sbjct: 1   MSNPLFLSGFLFSAFFTAHLFQFCHGDLGTATFYTAPYLPTACAGKDTSVFPASNLFAAA 60

Query: 61  GEGIWENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLST 120
           GEGIWENGAACGRQY VRCFSA VP SCVPDQ IQ+TIVDRAISTV+KP +  TTMVLST
Sbjct: 61  GEGIWENGAACGRQYQVRCFSADVPKSCVPDQIIQLTIVDRAISTVTKPTRGDTTMVLST 120

Query: 121 TAYKSIVQRNVAFVNVEFRE 136
           TAYKSIVQ +V+ VN+EFRE
Sbjct: 121 TAYKSIVQGSVSLVNIEFRE 140

[Close]
BLAST of Carg03905 vs. TAIR10
Match: AT2G18660.1 (plant natriuretic peptide A)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 29/94 (30.85%), Postives = 42/94 (44.68%), Query Frame = 0 

Query: 3  KPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIWEN 62
          K + + + F   L  ++    G A +Y PPY  +AC G          L       +W+N
Sbjct: 7  KFVVVMIVFAQILAPIAEAAQGKAVYYDPPYTRSACYGTQ-----RETLVVGVKNNLWQN 66

Query: 63 GAACGRQYLVRCFSAAVPMS-CVPDQTIQVTIVD 96
          G ACGR+Y VRC  A          +T+ V +VD
Sbjct: 67 GRACGRRYRVRCIGATYNFDRACTGRTVDVKVVD 95

[Close]
BLAST of Carg03905 vs. Swiss-Prot
Match: sp|Q9ZP41|EGC_CITJA (EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-08
Identity = 43/139 (30.94%), Postives = 65/139 (46.76%), Query Frame = 0 

Query: 2   SKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAG--NDISLFPASNLFAAAGEGI 61
           +K L ++   +  +   ++   GTAT Y+PPY+P+AC G  ND        + AAA   I
Sbjct: 5   TKVLVITTMAICLISSAAYASEGTATFYTPPYVPSACNGYKND------GVMIAAASYAI 64

Query: 62  WENGAACGRQYLVRCFSA---AVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTT 121
           W NGA C + + V+C  A     P  C    ++ V IVD        PA    T+ LS  
Sbjct: 65  WNNGAVCNKSFRVKCTGATNQGTPHPC-RGGSVLVKIVDLC------PAGCQATIDLSQE 124

Query: 122 AYKSIVQRNVAFVNVEFRE 136
           A+  I   +   + +EF +
Sbjct: 125 AFSQIANPDAGKIKIEFNQ 130

[Close]
BLAST of Carg03905 vs. Swiss-Prot
Match: sp|Q9ZV52|EGC2_ARATH (EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-05
Identity = 29/94 (30.85%), Postives = 42/94 (44.68%), Query Frame = 0 

Query: 3  KPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIWEN 62
          K + + + F   L  ++    G A +Y PPY  +AC G          L       +W+N
Sbjct: 7  KFVVVMIVFAQILAPIAEAAQGKAVYYDPPYTRSACYGTQ-----RETLVVGVKNNLWQN 66

Query: 63 GAACGRQYLVRCFSAAVPMS-CVPDQTIQVTIVD 96
          G ACGR+Y VRC  A          +T+ V +VD
Sbjct: 67 GRACGRRYRVRCIGATYNFDRACTGRTVDVKVVD 95

[Close]
BLAST of Carg03905 vs. TrEMBL
Match: tr|A0A1S3BC04|A0A1S3BC04_CUCME (EG45-like domain containing protein OS=Cucumis melo OX=3656 GN=LOC103488275 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.3e-49
Identity = 97/135 (71.85%), Postives = 117/135 (86.67%), Query Frame = 0 

Query: 1   MSKPLFLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIW 60
           +S+ LF S+FF+AHLFHLSHGD+G+ATHY PPYLPTAC GND S+FP +N+F AAGEGIW
Sbjct: 9   LSRCLF-SIFFIAHLFHLSHGDVGSATHYGPPYLPTACFGNDFSMFPTNNMFGAAGEGIW 68

Query: 61  ENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKS 120
           ENGAACGRQY VRCFS+AVP SCV DQTI++TIVDRA+STV+K A A TTM LSTTAYK+
Sbjct: 69  ENGAACGRQYRVRCFSSAVPNSCVRDQTIRITIVDRAVSTVAKAAVADTTMTLSTTAYKA 128

Query: 121 IVQRNVAFVNVEFRE 136
           IVQ + + VN+E+ +
Sbjct: 129 IVQGSASLVNIEYTQ 142

[Close]
BLAST of Carg03905 vs. TrEMBL
Match: tr|A0A0A0LQ33|A0A0A0LQ33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379920 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.9e-45
Identity = 95/141 (67.38%), Postives = 109/141 (77.30%), Query Frame = 0 

Query: 1   MSKPLFL------SVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAA 60
           MS PLFL      S+FF+AHLFHLSHGD+GTAT Y PPY PTAC GND+S+FP +N+F A
Sbjct: 1   MSNPLFLSRRCLFSIFFIAHLFHLSHGDVGTATTYGPPYTPTACFGNDLSMFPTNNMFGA 60

Query: 61  AGEGIWENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLS 120
           AGEGIW+NGAACGRQY V CFS+AVP SCV DQTI +TIVDRA+ST SK   A TTM LS
Sbjct: 61  AGEGIWDNGAACGRQYRVSCFSSAVPDSCVSDQTIMITIVDRAVSTSSKALVADTTMTLS 120

Query: 121 TTAYKSIVQRNVAFVNVEFRE 136
             AYK IVQ+N   V VE+ +
Sbjct: 121 RMAYKVIVQKNTPLVTVEYTQ 141

[Close]
BLAST of Carg03905 vs. TrEMBL
Match: tr|A0A2P6PY15|A0A2P6PY15_ROSCH (Putative rlpA-like protein, double-psi beta-barrel OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0298751 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 88/139 (63.31%), Postives = 108/139 (77.70%), Query Frame = 0 

Query: 1   MSKPL----FLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAG 60
           MS PL    FL  F LA LF  S  D+GTA HYSPPYLPT+C G+D S FP+SNLF +AG
Sbjct: 40  MSSPLRLLPFLLFFVLATLFGPSQADVGTAAHYSPPYLPTSCFGSDPSQFPSSNLFGSAG 99

Query: 61  EGIWENGAACGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTT 120
           EGIW+NGAACGRQYLVRC SAAVP +C+P QTIQ+ IVDRA+S+ S+P++   TMVLSTT
Sbjct: 100 EGIWDNGAACGRQYLVRCISAAVPKTCIPGQTIQIKIVDRALSSKSRPSRNDATMVLSTT 159

Query: 121 AYKSIVQRNVAFVNVEFRE 136
           A+ +I   + +FVNVEF++
Sbjct: 160 AFAAIANSSASFVNVEFQQ 178

[Close]
BLAST of Carg03905 vs. TrEMBL
Match: tr|A0A2K1WV72|A0A2K1WV72_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G031900v3 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 0 

Query: 6   FLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIWENGAA 65
           FL +  LA LFHLSHGD+GT +HY PPYLPTAC GN  S FP+SNLFAAAGEGIW+NGAA
Sbjct: 99  FLLLLLLATLFHLSHGDVGTCSHYRPPYLPTACYGNSSSHFPSSNLFAAAGEGIWDNGAA 158

Query: 66  CGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKSIVQRN 125
           CGRQYLVRC SAAVP +C+PDQ IQV IVDRA ++ S+P+    T+VLS+TA+ SI   +
Sbjct: 159 CGRQYLVRCISAAVPRTCLPDQIIQVRIVDRAQTSRSRPSSNGATIVLSSTAFGSIADPS 218

Query: 126 VAFVNVEFRE 136
              VNVEF++
Sbjct: 219 ARLVNVEFQQ 228

[Close]
BLAST of Carg03905 vs. TrEMBL
Match: tr|A0A2K1WV74|A0A2K1WV74_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G031900v3 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 0 

Query: 6   FLSVFFLAHLFHLSHGDIGTATHYSPPYLPTACAGNDISLFPASNLFAAAGEGIWENGAA 65
           FL +  LA LFHLSHGD+GT +HY PPYLPTAC GN  S FP+SNLFAAAGEGIW+NGAA
Sbjct: 99  FLLLLLLATLFHLSHGDVGTCSHYRPPYLPTACYGNSSSHFPSSNLFAAAGEGIWDNGAA 158

Query: 66  CGRQYLVRCFSAAVPMSCVPDQTIQVTIVDRAISTVSKPAKAATTMVLSTTAYKSIVQRN 125
           CGRQYLVRC SAAVP +C+PDQ IQV IVDRA ++ S+P+    T+VLS+TA+ SI   +
Sbjct: 159 CGRQYLVRCISAAVPRTCLPDQIIQVRIVDRAQTSRSRPSSNGATIVLSSTAFGSIADPS 218

Query: 126 VAFVNVEFRE 136
              VNVEF++
Sbjct: 219 ARLVNVEFQQ 228

The following BLAST results are available for this feature:
BLAST of Carg03905 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951750.13.7e-68100.00EG45-like domain containing protein [Cucurbita moschata][more]
XP_023538325.11.4e-6799.26EG45-like domain containing protein [Cucurbita pepo subsp. pepo][more]
XP_023002544.15.3e-6798.52EG45-like domain containing protein [Cucurbita maxima][more]
XP_022962593.14.8e-5278.57EG45-like domain containing protein [Cucurbita moschata] >XP_022962594.1 EG45-li... [more]
XP_022996669.11.5e-5076.43EG45-like domain containing protein [Cucurbita maxima][more]
BLAST of Carg03905 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18660.11.3e-0630.85plant natriuretic peptide A[more]
BLAST of Carg03905 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZP41|EGC_CITJA6.5e-0830.94EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 ... [more]
sp|Q9ZV52|EGC2_ARATH2.3e-0530.85EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE... [more]
BLAST of Carg03905 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BC04|A0A1S3BC04_CUCME7.3e-4971.85EG45-like domain containing protein OS=Cucumis melo OX=3656 GN=LOC103488275 PE=4... [more]
tr|A0A0A0LQ33|A0A0A0LQ33_CUCSA2.9e-4567.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379920 PE=4 SV=1[more]
tr|A0A2P6PY15|A0A2P6PY15_ROSCH1.6e-4063.31Putative rlpA-like protein, double-psi beta-barrel OS=Rosa chinensis OX=74649 GN... [more]
tr|A0A2K1WV72|A0A2K1WV72_POPTR2.1e-4066.15Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G031900v3 PE=... [more]
tr|A0A2K1WV74|A0A2K1WV74_POPTR2.1e-4066.15Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G031900v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007112Expansin/allergen_DPBB_dom
IPR009009RlpA-like_DPBB
IPR036908RlpA-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03905-RACarg03905-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036908RlpA-like domain superfamilyGENE3DG3DSA:2.40.40.10coord: 22..135
e-value: 1.2E-18
score: 69.5
IPR036908RlpA-like domain superfamilySUPERFAMILYSSF50685Barwin-like endoglucanasescoord: 10..135
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 57..132
e-value: 3.8E-7
score: 30.2
NoneNo IPR availablePANTHERPTHR22595CHITINASE-RELATEDcoord: 5..135
NoneNo IPR availablePANTHERPTHR22595:SF67SUBFAMILY NOT NAMEDcoord: 5..135
IPR007112Expansin/pollen allergen, DPBB domainPROSITEPS50842EXPANSIN_EG45coord: 35..135
score: 11.158

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03905Cla022298Watermelon (97103) v1carwmB0978
Carg03905Csa2G379920Cucumber (Chinese Long) v2carcuB0987
Carg03905Csa2G005990Cucumber (Chinese Long) v2carcuB0988
Carg03905MELO3C011229Melon (DHL92) v3.5.1carmeB0955
Carg03905ClCG08G013050Watermelon (Charleston Gray)carwcgB0958
Carg03905CSPI02G01470Wild cucumber (PI 183967)carcpiB1011
Carg03905CSPI02G23160Wild cucumber (PI 183967)carcpiB1010
Carg03905Cucsa.162150Cucumber (Gy14) v1carcgyB1091
Carg03905CmaCh05G013130Cucurbita maxima (Rimu)carcmaB1359
Carg03905CmaCh05G004070Cucurbita maxima (Rimu)carcmaB1357
Carg03905CmaCh12G003180Cucurbita maxima (Rimu)carcmaB1349
Carg03905CmoCh05G004190Cucurbita moschata (Rifu)carcmoB1319
Carg03905CmoCh12G002690Cucurbita moschata (Rifu)carcmoB1310
Carg03905Lsi08G011680Bottle gourd (USVL1VR-Ls)carlsiB898
Carg03905Cp4.1LG07g02880Cucurbita pepo (Zucchini)carcpeB1369
Carg03905Cp4.1LG07g02760Cucurbita pepo (Zucchini)carcpeB1368
Carg03905Cp4.1LG11g03350Cucurbita pepo (Zucchini)carcpeB1352
Carg03905CsGy2G022950Cucumber (Gy14) v2carcgybB0960
Carg03905CsGy2G001510Cucumber (Gy14) v2carcgybB0961
Carg03905MELO3C011229.2Melon (DHL92) v3.6.1carmedB0961
Carg03905CsaV3_2G002610Cucumber (Chinese Long) v3carcucB1016
Carg03905CsaV3_2G031780Cucumber (Chinese Long) v3carcucB1015
Carg03905Cla97C08G156380Watermelon (97103) v2carwmbB1034
Carg03905Bhi04G000818Wax gourdcarwgoB1145
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03905Carg09317Silver-seed gourdcarcarB168
Carg03905Carg10885Silver-seed gourdcarcarB529
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03905Silver-seed gourdcarcarB239
Carg03905Silver-seed gourdcarcarB558
Carg03905Silver-seed gourdcarcarB572
Carg03905Cucumber (Gy14) v2carcgybB0965
Carg03905Cucumber (Gy14) v1carcgyB1096
Carg03905Cucurbita maxima (Rimu)carcmaB1347
Carg03905Cucurbita maxima (Rimu)carcmaB1350
Carg03905Cucurbita maxima (Rimu)carcmaB1353
Carg03905Cucurbita moschata (Rifu)carcmoB1308
Carg03905Cucurbita moschata (Rifu)carcmoB1311
Carg03905Cucurbita moschata (Rifu)carcmoB1313
Carg03905Cucurbita moschata (Rifu)carcmoB1315
Carg03905Cucurbita pepo (Zucchini)carcpeB1354
Carg03905Cucurbita pepo (Zucchini)carcpeB1356
Carg03905Cucurbita pepo (Zucchini)carcpeB1363
Carg03905Cucurbita pepo (Zucchini)carcpeB1366
Carg03905Wild cucumber (PI 183967)carcpiB1016
Carg03905Cucumber (Chinese Long) v2carcuB0993
Carg03905Cucumber (Chinese Long) v3carcucB1021
Carg03905Bottle gourd (USVL1VR-Ls)carlsiB895
Carg03905Melon (DHL92) v3.5.1carmeB0957
Carg03905Melon (DHL92) v3.6.1carmedB0963
Carg03905Watermelon (Charleston Gray)carwcgB0957
Carg03905Watermelon (Charleston Gray)carwcgB0955
Carg03905Watermelon (97103) v1carwmB0980
Carg03905Watermelon (97103) v1carwmB0982
Carg03905Watermelon (97103) v2carwmbB1031
Carg03905Watermelon (97103) v2carwmbB1033
Carg03905Wax gourdcarwgoB1151